Wall clock time and date at job start Sat Mar 6 2021 03:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86304 * 109.47009 * 2 1 4 4 C 1.50693 * 109.47044 * 240.00078 * 2 1 3 5 5 C 1.31115 * 118.54766 * 120.02209 * 4 2 1 6 6 N 1.38925 * 121.84921 * 180.37999 * 5 4 2 7 7 C 1.47030 * 118.88355 * 346.68340 * 6 5 4 8 8 C 1.50695 * 109.87337 * 163.23296 * 7 6 5 9 9 O 1.21286 * 119.99919 * 340.89548 * 8 7 6 10 10 N 1.34776 * 120.00427 * 160.89905 * 8 7 6 11 11 C 1.46503 * 120.00614 * 180.02562 * 10 8 7 12 12 H 1.09000 * 112.84546 * 334.66565 * 11 10 8 13 13 C 1.53774 * 113.61663 * 105.85880 * 11 10 8 14 14 C 1.54055 * 86.98461 * 89.16277 * 13 11 10 15 15 H 1.08997 * 113.69170 * 270.87283 * 14 13 11 16 16 C 1.50705 * 113.61623 * 139.97551 * 14 13 11 17 17 C 1.38004 * 119.93490 * 142.50835 * 16 14 13 18 18 C 1.39318 * 119.88145 * 180.02562 * 17 16 14 19 19 C 1.48464 * 120.12192 * 179.97438 * 18 17 16 20 20 N 1.31808 * 126.67359 * 179.71455 * 19 18 17 21 21 N 1.28876 * 107.81855 * 179.83608 * 20 19 18 22 22 N 1.28728 * 109.31197 * 0.43188 * 21 20 19 23 23 N 1.28985 * 108.94993 * 359.72952 * 22 21 20 24 24 C 1.39292 * 119.76547 * 0.02562 * 18 17 16 25 25 C 1.38047 * 119.87594 * 0.02562 * 24 18 17 26 26 C 1.38298 * 120.12031 * 359.72183 * 25 24 18 27 27 C 1.53777 * 113.61644 * 203.47335 * 11 10 8 28 28 C 1.53544 * 107.65748 * 43.66645 * 7 6 5 29 29 C 1.50208 * 118.54580 * 299.99731 * 4 2 1 30 30 H 0.96699 * 114.00131 * 59.99932 * 1 2 3 31 31 H 1.09002 * 109.46731 * 119.99798 * 2 1 3 32 32 H 1.48503 * 110.00104 * 298.68076 * 3 2 1 33 33 H 1.48495 * 109.99984 * 59.99789 * 3 2 1 34 34 H 1.08001 * 119.07514 * 0.40723 * 5 4 2 35 35 H 0.97002 * 120.55853 * 166.70800 * 6 5 4 36 36 H 1.09002 * 109.82341 * 284.12636 * 7 6 5 37 37 H 0.97002 * 119.99777 * 359.97438 * 10 8 7 38 38 H 1.08998 * 113.61895 * 203.66590 * 13 11 10 39 39 H 1.09006 * 113.61431 * 334.57505 * 13 11 10 40 40 H 1.08005 * 120.06708 * 359.97438 * 17 16 14 41 41 H 0.97002 * 125.34861 * 180.16477 * 21 20 19 42 42 H 1.07997 * 120.06289 * 179.97438 * 24 18 17 43 43 H 1.08004 * 119.93948 * 179.97438 * 25 24 18 44 44 H 1.08000 * 119.88321 * 180.27192 * 26 25 24 45 45 H 1.08998 * 113.61302 * 25.42496 * 27 11 10 46 46 H 1.08996 * 113.61696 * 156.33721 * 27 11 10 47 47 H 1.08993 * 109.62385 * 58.77149 * 28 7 6 48 48 H 1.08998 * 109.62331 * 179.32799 * 28 7 6 49 49 H 1.08991 * 109.33119 * 39.71519 * 29 4 2 50 50 H 1.08998 * 109.19108 * 280.14479 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2304 5 6 2.6834 -0.0461 -2.0743 6 7 3.1771 -0.6309 -3.2337 7 6 3.1021 -2.0921 -3.3796 8 6 3.2971 -2.4733 -4.8244 9 8 3.1366 -1.6462 -5.6968 10 7 3.6497 -3.7334 -5.1472 11 6 3.8398 -4.1040 -6.5518 12 1 3.2736 -3.4725 -7.2365 13 6 5.3153 -4.2754 -6.9494 14 6 5.1742 -5.7494 -6.5243 15 1 5.3975 -5.9250 -5.4720 16 6 5.8824 -6.7128 -7.4416 17 6 6.5190 -7.8199 -6.9188 18 6 7.1739 -8.7095 -7.7677 19 6 7.8610 -9.9020 -7.2109 20 7 8.5115 -10.8249 -7.8910 21 7 8.9661 -11.6881 -7.0490 22 7 8.6165 -11.3463 -5.8582 23 7 7.9355 -10.2526 -5.9192 24 6 7.1827 -8.4756 -9.1408 25 6 6.5436 -7.3644 -9.6532 26 6 5.8906 -6.4873 -8.8064 27 6 3.6716 -5.6088 -6.8201 28 6 1.7104 -2.5365 -2.9071 29 6 1.5486 -2.1483 -1.4356 30 1 -0.3933 0.4417 -0.7650 31 1 1.7922 -0.5138 0.8900 32 1 1.5878 2.4586 -1.2243 33 1 1.5614 2.4679 1.2084 34 1 2.9264 0.9846 -1.8619 35 1 3.5650 -0.0846 -3.9351 36 1 3.8691 -2.5646 -2.7660 37 1 3.7783 -4.3949 -4.4495 38 1 5.4982 -4.1442 -8.0159 39 1 6.0044 -3.7042 -6.3273 40 1 6.5104 -7.9962 -5.8532 41 1 9.4864 -12.4744 -7.2771 42 1 7.6892 -9.1618 -9.8033 43 1 6.5501 -7.1818 -10.7177 44 1 5.3881 -5.6216 -9.2118 45 1 3.0346 -6.1133 -6.0937 46 1 3.4060 -5.8415 -7.8513 47 1 0.9454 -2.0391 -3.5031 48 1 1.6157 -3.6171 -3.0131 49 1 0.5102 -2.2915 -1.1368 50 1 2.1907 -2.7809 -0.8228 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_280130_17857610_17980846.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 03:32:22 Heat of formation + Delta-G solvation = 132.423367 kcal Electronic energy + Delta-G solvation = -33526.846499 eV Core-core repulsion = 28945.523262 eV Total energy + Delta-G solvation = -4581.323237 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 383.174 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -45.49344 -41.73991 -40.82854 -39.67194 -38.75446 -37.43611 -35.47763 -34.94720 -34.31635 -33.15669 -32.93968 -31.93298 -31.32089 -27.75648 -26.65546 -26.28756 -25.57634 -25.49410 -25.17700 -23.70075 -23.05525 -22.23036 -21.81297 -20.43583 -19.83176 -19.43442 -18.97400 -18.23955 -18.17758 -17.82708 -17.21945 -16.72972 -16.57437 -16.38876 -16.17777 -15.96276 -15.84762 -15.47170 -15.27286 -15.10714 -15.06185 -14.70180 -14.45093 -14.34748 -14.15521 -14.05012 -13.91375 -13.45837 -13.37393 -13.26758 -13.12609 -12.87397 -12.81758 -12.44946 -12.43009 -12.35418 -12.24185 -12.04987 -11.88310 -11.74776 -11.68985 -11.55949 -11.22518 -11.18846 -10.86618 -10.34805 -10.09837 -9.76112 -9.54178 -8.42921 -4.90410 -0.28706 0.15193 0.40749 1.30808 1.32880 1.39145 1.41942 1.51982 1.60186 1.90844 2.01017 2.65179 2.66517 2.78789 3.13816 3.50871 3.52152 3.60996 3.73165 3.77628 3.81081 3.90136 3.96782 4.04703 4.09747 4.11111 4.22487 4.27792 4.35845 4.39835 4.44554 4.48921 4.59289 4.63287 4.69101 4.71835 4.82715 4.83537 4.88988 4.90987 5.04322 5.07902 5.08735 5.10757 5.20680 5.24309 5.33253 5.45135 5.48950 5.53925 5.57593 5.60351 5.71182 5.95906 6.26536 6.48809 6.62371 6.84190 7.08117 7.14294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.556 6.556 2 C -0.055 4.055 3 Si 0.742 3.258 4 C -0.284 4.284 5 C 0.142 3.858 6 N -0.736 5.736 7 C 0.138 3.862 8 C 0.516 3.484 9 O -0.574 6.574 10 N -0.694 5.694 11 C 0.115 3.885 12 H 0.086 0.914 13 C -0.140 4.140 14 C -0.066 4.066 15 H 0.111 0.889 16 C -0.073 4.073 17 C -0.080 4.080 18 C -0.036 4.036 19 C 0.208 3.792 20 N -0.299 5.299 21 N -0.203 5.203 22 N -0.059 5.059 23 N -0.294 5.294 24 C -0.091 4.091 25 C -0.120 4.120 26 C -0.096 4.096 27 C -0.125 4.125 28 C -0.121 4.121 29 C -0.054 4.054 30 H 0.381 0.619 31 H 0.114 0.886 32 H -0.293 1.293 33 H -0.312 1.312 34 H 0.143 0.857 35 H 0.407 0.593 36 H 0.117 0.883 37 H 0.418 0.582 38 H 0.101 0.899 39 H 0.068 0.932 40 H 0.134 0.866 41 H 0.494 0.506 42 H 0.134 0.866 43 H 0.150 0.850 44 H 0.147 0.853 45 H 0.088 0.912 46 H 0.104 0.896 47 H 0.052 0.948 48 H 0.100 0.900 49 H 0.067 0.933 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.927 -4.308 -2.569 6.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.363 6.363 2 C -0.165 4.165 3 Si 0.650 3.350 4 C -0.295 4.295 5 C 0.021 3.979 6 N -0.368 5.368 7 C 0.029 3.971 8 C 0.302 3.698 9 O -0.452 6.452 10 N -0.346 5.346 11 C 0.010 3.990 12 H 0.104 0.896 13 C -0.179 4.179 14 C -0.084 4.084 15 H 0.129 0.871 16 C -0.073 4.073 17 C -0.100 4.100 18 C -0.039 4.039 19 C -0.072 4.072 20 N -0.151 5.151 21 N -0.054 5.054 22 N -0.054 5.054 23 N -0.166 5.166 24 C -0.111 4.111 25 C -0.137 4.137 26 C -0.114 4.114 27 C -0.163 4.163 28 C -0.160 4.160 29 C -0.091 4.091 30 H 0.230 0.770 31 H 0.132 0.868 32 H -0.220 1.220 33 H -0.241 1.241 34 H 0.160 0.840 35 H 0.244 0.756 36 H 0.134 0.866 37 H 0.256 0.744 38 H 0.119 0.881 39 H 0.087 0.913 40 H 0.152 0.848 41 H 0.352 0.648 42 H 0.152 0.848 43 H 0.168 0.832 44 H 0.165 0.835 45 H 0.106 0.894 46 H 0.122 0.878 47 H 0.071 0.929 48 H 0.119 0.881 49 H 0.086 0.914 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.914 -3.801 -2.137 5.860 hybrid contribution -0.653 -0.409 -0.935 1.211 sum 3.261 -4.210 -3.072 6.148 Atomic orbital electron populations 1.86531 1.19725 1.80123 1.49954 1.24818 0.82607 1.09628 0.99440 0.94753 0.91035 0.73698 0.75507 1.20934 1.08452 0.98951 1.01117 1.20484 0.93616 0.97045 0.86763 1.44385 1.67909 1.05135 1.19413 1.21126 1.00284 0.83651 0.92005 1.20856 0.75284 0.82480 0.91136 1.90726 1.52090 1.50958 1.51461 1.45524 1.69042 1.11253 1.08764 1.21855 0.97353 0.97097 0.82725 0.89597 1.23605 0.96244 0.95166 1.02846 1.21657 0.95072 0.92654 0.99066 0.87121 1.19723 0.98047 0.95095 0.94458 1.21136 0.95605 0.93152 1.00107 1.17387 1.01211 0.91251 0.94047 1.24041 0.99253 0.97044 0.86862 1.74897 1.15825 1.02440 1.21960 1.47821 1.35035 1.21067 1.01434 1.78879 1.10510 1.08880 1.07145 1.76060 1.15663 1.06203 1.18659 1.21313 0.98528 0.98196 0.93107 1.21363 0.97210 0.93725 1.01436 1.21481 0.97700 0.99527 0.92698 1.23386 0.95350 0.93394 1.04122 1.21831 0.94270 1.02609 0.97241 1.19955 1.01842 0.92596 0.94688 0.77028 0.86790 1.22018 1.24085 0.84045 0.75650 0.86578 0.74396 0.88112 0.91297 0.84807 0.64750 0.84800 0.83187 0.83515 0.89373 0.87807 0.92867 0.88132 0.91448 0.90136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -2.47 12.54 -148.98 -1.87 -4.34 16 2 C -0.05 -0.03 2.83 71.23 0.20 0.17 16 3 Si 0.74 -0.03 29.68 68.60 2.04 2.00 16 4 C -0.28 0.17 5.44 -16.76 -0.09 0.08 16 5 C 0.14 -0.18 9.63 83.41 0.80 0.63 16 6 N -0.74 0.56 5.47 -329.00 -1.80 -1.24 16 7 C 0.14 -0.49 3.36 44.33 0.15 -0.34 16 8 C 0.52 -0.18 7.09 87.66 0.62 0.44 16 9 O -0.57 -4.95 15.71 -3.05 -0.05 -5.00 16 10 N -0.69 4.23 5.26 -440.05 -2.32 1.92 16 11 C 0.12 -0.57 4.29 45.51 0.20 -0.38 16 12 H 0.09 -0.03 7.50 -2.39 -0.02 -0.05 16 13 C -0.14 0.81 7.27 31.21 0.23 1.03 16 14 C -0.07 0.48 3.87 -10.92 -0.04 0.43 16 15 H 0.11 -0.99 8.09 -2.39 -0.02 -1.01 16 16 C -0.07 0.26 5.29 -19.90 -0.11 0.15 16 17 C -0.08 -0.01 9.36 22.47 0.21 0.20 16 18 C -0.04 -0.09 5.88 -20.04 -0.12 -0.21 16 19 C 0.21 1.11 7.94 137.38 1.09 2.20 16 20 N -0.30 -0.85 12.08 -52.13 -0.63 -1.48 16 21 N -0.20 0.27 7.90 37.02 0.29 0.56 16 22 N -0.06 -0.26 13.47 37.02 0.50 0.24 16 23 N -0.29 -2.14 12.23 -52.18 -0.64 -2.78 16 24 C -0.09 0.01 9.70 22.48 0.22 0.23 16 25 C -0.12 0.42 10.03 22.24 0.22 0.65 16 26 C -0.10 0.44 8.60 22.31 0.19 0.63 16 27 C -0.12 1.01 7.29 31.12 0.23 1.24 16 28 C -0.12 0.41 5.47 30.79 0.17 0.58 16 29 C -0.05 0.11 5.83 29.71 0.17 0.28 16 30 H 0.38 -0.13 8.70 -74.06 -0.64 -0.77 16 31 H 0.11 -0.09 7.96 -2.39 -0.02 -0.11 16 32 H -0.29 -1.34 7.10 99.48 0.71 -0.63 16 33 H -0.31 -2.67 7.11 99.48 0.71 -1.96 16 34 H 0.14 -0.54 4.37 -2.91 -0.01 -0.56 16 35 H 0.41 0.12 8.10 -92.71 -0.75 -0.63 16 36 H 0.12 -0.94 8.14 -2.39 -0.02 -0.96 16 37 H 0.42 -4.96 8.70 -92.71 -0.81 -5.77 16 38 H 0.10 -0.66 6.32 -2.39 -0.02 -0.67 16 39 H 0.07 -0.26 8.14 -2.38 -0.02 -0.28 16 40 H 0.13 -0.04 7.88 -2.91 -0.02 -0.07 16 41 H 0.49 -5.35 8.96 -347.53 -3.12 -8.46 16 42 H 0.13 -0.17 7.88 -2.91 -0.02 -0.19 16 43 H 0.15 -1.16 8.06 -2.91 -0.02 -1.19 16 44 H 0.15 -1.25 6.66 -2.91 -0.02 -1.27 16 45 H 0.09 -0.82 8.14 -2.39 -0.02 -0.84 16 46 H 0.10 -0.87 7.71 -2.39 -0.02 -0.89 16 47 H 0.05 0.08 8.14 -2.39 -0.02 0.06 16 48 H 0.10 -0.78 8.14 -2.39 -0.02 -0.80 16 49 H 0.07 0.04 7.82 -2.39 -0.02 0.02 16 50 H 0.08 -0.35 8.14 -2.39 -0.02 -0.37 16 Total: 0.00 -25.13 411.29 -4.36 -29.49 By element: Atomic # 1 Polarization: -23.16 SS G_CDS: -4.23 Total: -27.39 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: 4.34 Total: 8.02 kcal Atomic # 7 Polarization: 1.81 SS G_CDS: -4.59 Total: -2.78 kcal Atomic # 8 Polarization: -7.42 SS G_CDS: -1.92 Total: -9.33 kcal Atomic # 14 Polarization: -0.03 SS G_CDS: 2.04 Total: 2.00 kcal Total: -25.13 -4.36 -29.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_280130_17857610_17980846.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.909 kcal (2) G-P(sol) polarization free energy of solvation -25.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds