Wall clock time and date at job start Sat Mar 6 2021 03:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86296 * 109.47108 * 2 1 4 4 C 1.50702 * 109.46572 * 119.99773 * 2 1 3 5 5 C 1.31120 * 118.54515 * 256.97377 * 4 2 1 6 6 N 1.38925 * 121.84510 * 180.40857 * 5 4 2 7 7 C 1.47032 * 118.88455 * 346.68849 * 6 5 4 8 8 C 1.53540 * 107.64868 * 43.67961 * 7 6 5 9 9 C 1.50199 * 118.54917 * 77.00479 * 4 2 1 10 10 C 1.50699 * 109.19166 * 39.76741 * 9 4 2 11 11 O 1.21284 * 119.99735 * 89.87874 * 10 9 4 12 12 N 1.34774 * 120.00503 * 269.88199 * 10 9 4 13 13 C 1.46497 * 120.00427 * 176.03995 * 12 10 9 14 14 H 1.08999 * 112.84890 * 334.67080 * 13 12 10 15 15 C 1.53784 * 113.61649 * 105.86140 * 13 12 10 16 16 C 1.54047 * 86.98413 * 89.16351 * 15 13 12 17 17 H 1.09004 * 113.61681 * 270.88715 * 16 15 13 18 18 C 1.50700 * 113.62257 * 139.97961 * 16 15 13 19 19 C 1.38009 * 119.94462 * 142.50184 * 18 16 15 20 20 C 1.39320 * 119.88163 * 180.02562 * 19 18 16 21 21 C 1.48458 * 120.11403 * 179.97438 * 20 19 18 22 22 N 1.31810 * 126.67123 * 179.70987 * 21 20 19 23 23 N 1.28879 * 107.81840 * 179.83857 * 22 21 20 24 24 N 1.28729 * 109.31539 * 0.43248 * 23 22 21 25 25 N 1.28988 * 108.94087 * 359.73343 * 24 23 22 26 26 C 1.39285 * 119.76409 * 0.02562 * 20 19 18 27 27 C 1.38047 * 119.88269 * 0.02562 * 26 20 19 28 28 C 1.38295 * 120.11562 * 359.72366 * 27 26 20 29 29 C 1.53780 * 113.61755 * 203.47325 * 13 12 10 30 30 H 0.96696 * 114.00313 * 183.78566 * 1 2 3 31 31 H 1.08998 * 109.47167 * 239.99477 * 2 1 3 32 32 H 1.48502 * 110.00425 * 58.67964 * 3 2 1 33 33 H 1.48505 * 110.00137 * 179.97438 * 3 2 1 34 34 H 1.07998 * 119.07778 * 0.43605 * 5 4 2 35 35 H 0.97004 * 120.55431 * 166.66252 * 6 5 4 36 36 H 1.09000 * 109.83979 * 284.13608 * 7 6 5 37 37 H 1.08997 * 109.81794 * 163.20792 * 7 6 5 38 38 H 1.09000 * 109.62559 * 179.31540 * 8 7 6 39 39 H 1.09001 * 109.62423 * 58.75569 * 8 7 6 40 40 H 1.09001 * 109.32940 * 280.20318 * 9 4 2 41 41 H 0.97001 * 119.99791 * 356.04522 * 12 10 9 42 42 H 1.08998 * 113.61854 * 203.66997 * 15 13 12 43 43 H 1.09003 * 113.61149 * 334.57080 * 15 13 12 44 44 H 1.07996 * 120.05531 * 359.97438 * 19 18 16 45 45 H 0.97004 * 125.33938 * 180.17287 * 23 22 21 46 46 H 1.08003 * 120.05371 * 180.02562 * 26 20 19 47 47 H 1.07996 * 119.93790 * 179.97438 * 27 26 20 48 48 H 1.08000 * 119.87952 * 180.27490 * 28 27 26 49 49 H 1.09003 * 113.61515 * 25.43097 * 29 13 12 50 50 H 1.09001 * 113.61419 * 156.25579 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9312 -0.7104 1.2305 5 6 2.3848 0.0094 2.2283 6 7 2.8717 -0.5742 3.3912 7 6 2.6113 -2.0010 3.6327 8 6 2.8597 -2.7491 2.3151 9 6 1.8907 -2.2116 1.2596 10 6 2.2826 -2.7440 -0.0947 11 8 3.4471 -2.9775 -0.3406 12 7 1.3393 -2.9606 -1.0325 13 6 1.7284 -3.3953 -2.3763 14 1 2.7433 -3.0976 -2.6401 15 6 1.4293 -4.8778 -2.6550 16 6 0.0425 -4.4215 -3.1464 17 1 -0.7081 -4.3786 -2.3572 18 6 -0.4361 -5.1570 -4.3716 19 6 -1.7704 -5.4850 -4.5008 20 6 -2.2114 -6.1654 -5.6338 21 6 -3.6454 -6.5214 -5.7778 22 7 -4.2012 -7.1553 -6.7910 23 7 -5.4594 -7.2754 -6.5387 24 7 -5.7198 -6.7297 -5.4023 25 7 -4.6279 -6.2555 -4.9056 26 6 -1.3018 -6.5114 -6.6302 27 6 0.0308 -6.1794 -6.4905 28 6 0.4623 -5.4994 -5.3662 29 6 0.6875 -3.0606 -3.4577 30 1 -0.3933 -0.8814 0.0583 31 1 1.7923 -0.5139 -0.8899 32 1 1.5354 2.4772 1.1921 33 1 3.5350 1.7702 0.0006 34 1 2.3793 1.0860 2.1439 35 1 3.3753 -0.0492 4.0329 36 1 1.5770 -2.1402 3.9474 37 1 3.2862 -2.3746 4.4027 38 1 2.6871 -3.8153 2.4613 39 1 3.8861 -2.5832 1.9879 40 1 0.8792 -2.5406 1.4976 41 1 0.4026 -2.8286 -0.8178 42 1 2.0508 -5.3085 -3.4401 43 1 1.3949 -5.4928 -1.7557 44 1 -2.4713 -5.2155 -3.7246 45 1 -6.1089 -7.7058 -7.1165 46 1 -1.6386 -7.0386 -7.5107 47 1 0.7369 -6.4476 -7.2624 48 1 1.5050 -5.2376 -5.2629 49 1 0.0546 -2.2096 -3.2060 50 1 1.1068 -2.9941 -4.4616 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_280130_17857610_17981140.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 03:32:26 Heat of formation + Delta-G solvation = 131.881477 kcal Electronic energy + Delta-G solvation = -34679.930488 eV Core-core repulsion = 30098.583753 eV Total energy + Delta-G solvation = -4581.346735 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 383.174 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -45.49045 -41.84313 -40.90076 -39.58726 -38.61239 -37.47164 -35.46842 -34.88397 -34.27704 -33.39010 -32.84754 -31.94593 -31.31986 -27.53596 -26.63778 -26.46830 -25.93494 -25.50138 -25.20888 -23.33127 -23.05014 -22.32214 -21.86856 -20.42469 -19.81837 -19.33691 -19.04863 -18.32911 -18.17492 -17.91084 -17.76896 -16.93964 -16.52797 -16.46191 -16.22966 -15.98167 -15.58439 -15.33432 -15.13771 -15.12719 -14.82717 -14.68100 -14.53755 -14.42716 -14.16832 -14.03696 -13.70022 -13.45219 -13.35857 -13.30713 -13.24174 -12.87357 -12.66591 -12.44254 -12.42186 -12.37242 -12.27077 -12.23426 -12.03877 -11.71132 -11.54413 -11.53705 -11.16990 -11.04780 -10.94113 -10.75280 -10.03600 -9.75268 -9.53216 -8.59141 -4.82863 -0.28187 0.15463 0.41670 1.10697 1.31436 1.38593 1.39347 1.61198 1.65760 1.89417 2.17060 2.51654 2.65626 2.79686 3.14251 3.49096 3.53577 3.60157 3.76124 3.77254 3.84738 3.98121 3.99572 4.06119 4.08794 4.11822 4.21409 4.23597 4.28635 4.30699 4.40226 4.45259 4.46041 4.54675 4.60220 4.66603 4.70011 4.75721 4.85334 4.89864 4.94391 5.05441 5.07123 5.10820 5.11696 5.18449 5.24014 5.32074 5.45807 5.49743 5.57258 5.58225 5.73372 5.96698 6.18811 6.50509 6.76625 6.79007 7.08403 7.23200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.543 6.543 2 C -0.063 4.063 3 Si 0.787 3.213 4 C -0.286 4.286 5 C 0.142 3.858 6 N -0.750 5.750 7 C 0.122 3.878 8 C -0.125 4.125 9 C -0.038 4.038 10 C 0.528 3.472 11 O -0.579 6.579 12 N -0.699 5.699 13 C 0.115 3.885 14 H 0.083 0.917 15 C -0.141 4.141 16 C -0.065 4.065 17 H 0.109 0.891 18 C -0.072 4.072 19 C -0.080 4.080 20 C -0.037 4.037 21 C 0.209 3.791 22 N -0.299 5.299 23 N -0.203 5.203 24 N -0.059 5.059 25 N -0.295 5.295 26 C -0.091 4.091 27 C -0.119 4.119 28 C -0.095 4.095 29 C -0.123 4.123 30 H 0.370 0.630 31 H 0.065 0.935 32 H -0.281 1.281 33 H -0.287 1.287 34 H 0.124 0.876 35 H 0.410 0.590 36 H 0.074 0.926 37 H 0.101 0.899 38 H 0.089 0.911 39 H 0.056 0.944 40 H 0.114 0.886 41 H 0.414 0.586 42 H 0.100 0.900 43 H 0.065 0.935 44 H 0.134 0.866 45 H 0.494 0.506 46 H 0.135 0.865 47 H 0.151 0.849 48 H 0.147 0.853 49 H 0.090 0.910 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.101 -1.073 -1.532 2.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.349 6.349 2 C -0.173 4.173 3 Si 0.691 3.309 4 C -0.298 4.298 5 C 0.019 3.981 6 N -0.380 5.380 7 C -0.002 4.002 8 C -0.164 4.164 9 C -0.060 4.060 10 C 0.316 3.684 11 O -0.458 6.458 12 N -0.351 5.351 13 C 0.009 3.991 14 H 0.101 0.899 15 C -0.180 4.180 16 C -0.083 4.083 17 H 0.127 0.873 18 C -0.072 4.072 19 C -0.100 4.100 20 C -0.040 4.040 21 C -0.070 4.070 22 N -0.152 5.152 23 N -0.054 5.054 24 N -0.054 5.054 25 N -0.167 5.167 26 C -0.111 4.111 27 C -0.137 4.137 28 C -0.114 4.114 29 C -0.161 4.161 30 H 0.218 0.782 31 H 0.083 0.917 32 H -0.209 1.209 33 H -0.214 1.214 34 H 0.141 0.859 35 H 0.245 0.755 36 H 0.092 0.908 37 H 0.119 0.881 38 H 0.108 0.892 39 H 0.075 0.925 40 H 0.132 0.868 41 H 0.251 0.749 42 H 0.118 0.882 43 H 0.083 0.917 44 H 0.152 0.848 45 H 0.352 0.648 46 H 0.152 0.848 47 H 0.168 0.832 48 H 0.164 0.836 49 H 0.108 0.892 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.452 -0.169 -1.127 1.846 hybrid contribution -0.245 -1.698 0.466 1.777 sum -1.697 -1.867 -0.661 2.608 Atomic orbital electron populations 1.86737 1.17281 1.33978 1.96931 1.25007 0.84575 1.12366 0.95336 0.92526 0.75897 0.76216 0.86245 1.20628 1.17458 0.93836 0.97829 1.20536 0.93852 0.96385 0.87305 1.44692 1.60744 1.10906 1.21647 1.21724 1.02198 0.79686 0.96557 1.21770 0.99110 1.00627 0.94899 1.19745 1.01999 0.92472 0.91737 1.20780 0.85230 0.75719 0.86700 1.90693 1.20694 1.53046 1.81375 1.45686 1.10224 1.68258 1.10885 1.21850 0.99430 0.95525 0.82277 0.89863 1.23602 0.96276 0.96248 1.01827 1.21633 0.96723 0.95295 0.94692 0.87268 1.19713 0.92249 0.98677 0.96572 1.21130 0.96187 0.96349 0.96321 1.17390 0.85007 1.03676 0.97912 1.24018 0.97118 0.98112 0.87783 1.74898 0.93671 1.21299 1.25311 1.47819 1.06432 1.36349 1.14751 1.78881 1.20596 1.08759 0.97155 1.76059 0.95229 1.19935 1.25464 1.21309 0.93292 0.98592 0.97910 1.21359 0.95135 0.98388 0.98823 1.21478 1.00709 0.96402 0.92793 1.23381 0.96701 0.96958 0.99037 0.78158 0.91688 1.20870 1.21407 0.85891 0.75451 0.90833 0.88118 0.89207 0.92529 0.86784 0.74906 0.88201 0.91651 0.84849 0.64757 0.84757 0.83157 0.83571 0.89188 0.87708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.39 12.67 -148.98 -1.89 -1.50 16 2 C -0.06 -0.07 2.43 71.24 0.17 0.10 16 3 Si 0.79 1.47 30.39 68.60 2.08 3.55 16 4 C -0.29 -0.73 4.93 -16.76 -0.08 -0.82 16 5 C 0.14 0.48 9.60 83.41 0.80 1.28 16 6 N -0.75 0.09 5.83 -345.90 -2.02 -1.93 16 7 C 0.12 -0.35 7.16 86.46 0.62 0.27 16 8 C -0.13 -0.10 5.26 30.79 0.16 0.07 16 9 C -0.04 0.00 2.70 -12.43 -0.03 -0.04 16 10 C 0.53 1.80 5.47 87.66 0.48 2.28 16 11 O -0.58 -7.51 15.62 -3.04 -0.05 -7.56 16 12 N -0.70 2.31 4.65 -440.04 -2.05 0.26 16 13 C 0.11 -0.32 4.27 45.52 0.19 -0.13 16 14 H 0.08 0.16 7.55 -2.39 -0.02 0.14 16 15 C -0.14 0.53 7.27 31.21 0.23 0.76 16 16 C -0.07 0.37 3.87 -10.92 -0.04 0.33 16 17 H 0.11 -0.80 8.09 -2.39 -0.02 -0.82 16 18 C -0.07 0.18 5.29 -19.90 -0.11 0.07 16 19 C -0.08 -0.08 9.36 22.48 0.21 0.13 16 20 C -0.04 -0.12 5.88 -20.04 -0.12 -0.24 16 21 C 0.21 1.26 7.94 137.38 1.09 2.35 16 22 N -0.30 -1.04 12.08 -52.14 -0.63 -1.67 16 23 N -0.20 0.15 7.90 37.02 0.29 0.45 16 24 N -0.06 -0.29 13.47 37.02 0.50 0.20 16 25 N -0.29 -2.36 12.23 -52.19 -0.64 -3.00 16 26 C -0.09 -0.05 9.70 22.48 0.22 0.17 16 27 C -0.12 0.33 10.03 22.24 0.22 0.55 16 28 C -0.10 0.34 8.60 22.31 0.19 0.54 16 29 C -0.12 0.82 7.28 31.12 0.23 1.04 16 30 H 0.37 -2.77 8.58 -74.06 -0.64 -3.41 16 31 H 0.07 0.09 6.24 -2.39 -0.01 0.07 16 32 H -0.28 -1.70 6.72 99.48 0.67 -1.03 16 33 H -0.29 -2.13 7.11 99.48 0.71 -1.42 16 34 H 0.12 0.47 4.47 -2.91 -0.01 0.46 16 35 H 0.41 -1.43 8.96 -92.71 -0.83 -2.26 16 36 H 0.07 -0.33 8.14 -2.39 -0.02 -0.35 16 37 H 0.10 -0.62 8.14 -2.39 -0.02 -0.64 16 38 H 0.09 -0.15 8.14 -2.39 -0.02 -0.17 16 39 H 0.06 0.41 7.48 -2.39 -0.02 0.39 16 40 H 0.11 -0.61 8.14 -2.39 -0.02 -0.63 16 41 H 0.41 -3.77 8.24 -92.71 -0.76 -4.54 16 42 H 0.10 -0.47 6.32 -2.39 -0.02 -0.48 16 43 H 0.06 -0.09 8.14 -2.39 -0.02 -0.11 16 44 H 0.13 0.09 7.88 -2.91 -0.02 0.07 16 45 H 0.49 -5.09 8.96 -347.53 -3.12 -8.21 16 46 H 0.13 -0.09 7.88 -2.91 -0.02 -0.11 16 47 H 0.15 -1.06 8.06 -2.91 -0.02 -1.08 16 48 H 0.15 -1.08 6.66 -2.91 -0.02 -1.10 16 49 H 0.09 -0.71 8.14 -2.39 -0.02 -0.73 16 50 H 0.10 -0.75 7.72 -2.39 -0.02 -0.77 16 Total: 0.00 -24.96 407.66 -4.25 -29.21 By element: Atomic # 1 Polarization: -22.43 SS G_CDS: -4.29 Total: -26.72 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: 4.43 Total: 8.70 kcal Atomic # 7 Polarization: -1.14 SS G_CDS: -4.54 Total: -5.68 kcal Atomic # 8 Polarization: -7.12 SS G_CDS: -1.94 Total: -9.05 kcal Atomic # 14 Polarization: 1.47 SS G_CDS: 2.08 Total: 3.55 kcal Total: -24.96 -4.25 -29.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_280130_17857610_17981140.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.090 kcal (2) G-P(sol) polarization free energy of solvation -24.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds