Wall clock time and date at job start Fri Mar 5 2021 21:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86293 * 109.47270 * 2 1 4 4 C 1.50699 * 109.47136 * 239.99757 * 2 1 3 5 5 C 1.34239 * 126.49833 * 105.32056 * 4 2 1 6 6 N 1.36832 * 109.93540 * 180.16636 * 5 4 2 7 7 C 1.46498 * 125.06206 * 179.81727 * 6 5 4 8 8 C 1.50706 * 109.46774 * 264.69455 * 7 6 5 9 9 O 1.21274 * 120.00215 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99955 * 180.02562 * 8 7 6 11 11 C 1.46499 * 119.99999 * 180.02562 * 10 8 7 12 12 H 1.08993 * 112.84964 * 23.80229 * 11 10 8 13 13 C 1.53783 * 113.61210 * 154.99616 * 11 10 8 14 14 C 1.53786 * 87.08050 * 89.20097 * 13 11 10 15 15 H 1.09002 * 113.61357 * 270.88070 * 14 13 11 16 16 C 1.50697 * 113.61519 * 140.06465 * 14 13 11 17 17 C 1.38322 * 119.87906 * 301.25497 * 16 14 13 18 18 C 1.38035 * 120.11285 * 179.72795 * 17 16 14 19 19 C 1.39296 * 119.88248 * 0.56445 * 18 17 16 20 20 C 1.48464 * 120.11771 * 179.68272 * 19 18 17 21 21 N 1.31814 * 126.67332 * 359.74081 * 20 19 18 22 22 N 1.28869 * 107.81441 * 179.83715 * 21 20 19 23 23 N 1.28730 * 109.32131 * 0.42804 * 22 21 20 24 24 N 1.28988 * 108.94213 * 359.73549 * 23 22 21 25 25 C 1.39302 * 119.76507 * 359.71053 * 19 18 17 26 26 C 1.38028 * 119.88119 * 359.97438 * 25 19 18 27 27 C 1.53781 * 87.17350 * 25.47154 * 14 13 11 28 28 C 1.37698 * 109.87577 * 359.54717 * 6 5 4 29 29 C 1.39086 * 133.51415 * 180.24271 * 28 6 5 30 30 C 1.37789 * 119.77934 * 180.02562 * 29 28 6 31 31 C 1.38796 * 120.66390 * 359.97438 * 30 29 28 32 32 C 1.36658 * 120.52693 * 0.02562 * 31 30 29 33 33 C 1.39595 * 119.76717 * 359.97438 * 32 31 30 34 34 H 0.96700 * 113.99928 * 60.00044 * 1 2 3 35 35 H 1.09005 * 109.46694 * 120.00201 * 2 1 3 36 36 H 1.48504 * 109.99959 * 59.99976 * 3 2 1 37 37 H 1.48500 * 110.00143 * 181.31581 * 3 2 1 38 38 H 1.07998 * 125.03337 * 0.02562 * 5 4 2 39 39 H 1.09006 * 109.47589 * 144.69720 * 7 6 5 40 40 H 1.08999 * 109.47230 * 24.69019 * 7 6 5 41 41 H 0.96999 * 119.99974 * 359.97438 * 10 8 7 42 42 H 1.08992 * 113.61796 * 334.64954 * 13 11 10 43 43 H 1.09005 * 113.68996 * 203.75566 * 13 11 10 44 44 H 1.07998 * 119.94288 * 359.97438 * 17 16 14 45 45 H 1.07997 * 120.05726 * 180.27177 * 18 17 16 46 46 H 0.97000 * 125.33437 * 180.14392 * 22 21 20 47 47 H 1.08007 * 120.05795 * 180.02562 * 25 19 18 48 48 H 1.08006 * 119.93919 * 180.02562 * 26 25 19 49 49 H 1.08999 * 113.61567 * 89.07405 * 27 14 13 50 50 H 1.08998 * 113.61196 * 219.97759 * 27 14 13 51 51 H 1.08004 * 120.11052 * 0.04706 * 29 28 6 52 52 H 1.07997 * 119.67067 * 180.02562 * 30 29 28 53 53 H 1.07994 * 119.73345 * 180.02562 * 31 30 29 54 54 H 1.07997 * 120.11721 * 179.97438 * 32 31 30 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 2.4663 -0.1380 -2.3205 6 7 2.8029 -1.0991 -3.2345 7 6 3.4078 -0.8405 -4.5434 8 6 2.3281 -0.7841 -5.5934 9 8 1.1678 -0.9445 -5.2792 10 7 2.6521 -0.5563 -6.8816 11 6 1.6025 -0.5009 -7.9021 12 1 0.6259 -0.2452 -7.4914 13 6 1.9879 0.3299 -9.1376 14 6 2.5671 -0.9655 -9.7304 15 1 3.6123 -1.1349 -9.4716 16 6 2.2951 -1.1296 -11.2035 17 6 0.9914 -1.1521 -11.6652 18 6 0.7368 -1.2965 -13.0142 19 6 1.7952 -1.4315 -13.9096 20 6 1.5272 -1.5942 -15.3608 21 7 0.3455 -1.6340 -15.9435 22 7 0.5350 -1.7825 -17.2095 23 7 1.7987 -1.8471 -17.4463 24 7 2.4397 -1.7350 -16.3326 25 6 3.1061 -1.4139 -13.4386 26 6 3.3497 -1.2624 -12.0885 27 6 1.5787 -1.7283 -8.8327 28 6 2.4940 -2.3458 -2.7382 29 6 2.6287 -3.6363 -3.2392 30 6 2.2145 -4.7108 -2.4826 31 6 1.6637 -4.5194 -1.2231 32 6 1.5220 -3.2601 -0.7115 33 6 1.9350 -2.1571 -1.4609 34 1 -0.3933 0.4417 -0.7651 35 1 1.7922 -0.5139 0.8900 36 1 1.5615 2.4678 1.2085 37 1 3.5346 1.7702 -0.0320 38 1 2.6078 0.9239 -2.4568 39 1 4.1077 -1.6405 -4.7848 40 1 3.9387 0.1111 -4.5168 41 1 3.5802 -0.4283 -7.1329 42 1 2.7404 1.0917 -8.9341 43 1 1.1314 0.7176 -9.6891 44 1 0.1714 -1.0525 -10.9695 45 1 -0.2813 -1.3095 -13.3741 46 1 -0.1649 -1.8410 -17.8785 47 1 3.9304 -1.5178 -14.1288 48 1 4.3657 -1.2482 -11.7223 49 1 0.6097 -1.9030 -9.3001 50 1 2.0012 -2.6270 -8.3833 51 1 3.0568 -3.7956 -4.2179 52 1 2.3203 -5.7121 -2.8731 53 1 1.3445 -5.3724 -0.6428 54 1 1.0922 -3.1187 0.2691 There are 78 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 78 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_280130_17857820_17875166.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 21:52:58 Heat of formation + Delta-G solvation = 184.987795 kcal Electronic energy + Delta-G solvation = -39305.441757 eV Core-core repulsion = 34213.493323 eV Total energy + Delta-G solvation = -5091.948434 eV No. of doubly occupied orbitals = 78 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 431.174 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -45.50046 -42.51114 -41.47306 -40.30559 -38.88679 -38.06913 -37.56000 -35.50678 -34.93186 -34.28575 -33.84481 -31.96068 -31.69079 -31.20207 -30.21671 -28.93699 -26.84515 -26.62787 -25.78883 -25.71710 -24.29942 -23.76650 -23.47022 -22.75569 -22.15304 -21.75027 -20.64097 -20.35740 -19.97294 -18.63499 -18.44729 -18.18632 -17.90529 -17.68180 -17.27169 -16.94380 -16.43812 -16.40626 -16.27648 -16.09953 -15.93857 -15.49445 -15.41724 -15.25434 -14.92992 -14.87058 -14.70069 -14.59995 -14.37796 -14.32097 -14.12517 -14.04023 -13.68427 -13.64677 -13.46292 -13.33480 -13.10762 -13.03418 -12.70924 -12.55325 -12.44825 -12.37749 -12.22182 -12.12799 -12.09439 -12.04205 -11.79689 -11.77129 -11.46830 -11.16212 -11.08536 -10.53244 -10.28605 -10.06930 -9.90250 -9.44876 -9.14126 -8.60609 -4.98113 -0.31290 0.13533 0.15658 0.45357 0.64578 1.28027 1.38612 1.38631 1.43877 1.52331 1.70774 1.73571 2.02147 2.25260 2.66082 2.78363 2.95657 3.14166 3.53001 3.59691 3.67717 3.70815 3.73319 3.74881 3.82566 3.91329 3.97158 4.05203 4.06129 4.08503 4.19659 4.20481 4.23158 4.31937 4.33043 4.38861 4.47371 4.49364 4.57338 4.59174 4.71437 4.73276 4.80179 4.84823 4.89227 4.91407 4.93664 5.00274 5.09520 5.14524 5.15464 5.22596 5.40367 5.47594 5.51474 5.56173 5.57253 5.66902 5.73175 5.74540 5.76844 5.95644 6.22248 6.26663 6.54922 6.83797 7.07354 7.22156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.565 6.565 2 C -0.048 4.048 3 Si 0.795 3.205 4 C -0.226 4.226 5 C 0.081 3.919 6 N -0.466 5.466 7 C 0.087 3.913 8 C 0.495 3.505 9 O -0.568 6.568 10 N -0.694 5.694 11 C 0.118 3.882 12 H 0.081 0.919 13 C -0.123 4.123 14 C -0.066 4.066 15 H 0.121 0.879 16 C -0.048 4.048 17 C -0.121 4.121 18 C -0.083 4.083 19 C -0.043 4.043 20 C 0.208 3.792 21 N -0.300 5.300 22 N -0.203 5.203 23 N -0.060 5.060 24 N -0.296 5.296 25 C -0.083 4.083 26 C -0.116 4.116 27 C -0.145 4.145 28 C 0.092 3.908 29 C -0.132 4.132 30 C -0.109 4.109 31 C -0.154 4.154 32 C -0.092 4.092 33 C -0.118 4.118 34 H 0.390 0.610 35 H 0.091 0.909 36 H -0.302 1.302 37 H -0.274 1.274 38 H 0.210 0.790 39 H 0.142 0.858 40 H 0.167 0.833 41 H 0.421 0.579 42 H 0.094 0.906 43 H 0.098 0.902 44 H 0.145 0.855 45 H 0.134 0.866 46 H 0.494 0.506 47 H 0.133 0.867 48 H 0.153 0.847 49 H 0.093 0.907 50 H 0.068 0.932 51 H 0.134 0.866 52 H 0.145 0.855 53 H 0.134 0.866 54 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.049 4.109 -5.291 7.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.372 6.372 2 C -0.156 4.156 3 Si 0.699 3.301 4 C -0.234 4.234 5 C -0.044 4.044 6 N -0.148 5.148 7 C -0.038 4.038 8 C 0.281 3.719 9 O -0.446 6.446 10 N -0.347 5.347 11 C 0.012 3.988 12 H 0.099 0.901 13 C -0.161 4.161 14 C -0.084 4.084 15 H 0.139 0.861 16 C -0.049 4.049 17 C -0.139 4.139 18 C -0.103 4.103 19 C -0.047 4.047 20 C -0.072 4.072 21 N -0.152 5.152 22 N -0.054 5.054 23 N -0.055 5.055 24 N -0.168 5.168 25 C -0.103 4.103 26 C -0.134 4.134 27 C -0.183 4.183 28 C -0.014 4.014 29 C -0.152 4.152 30 C -0.128 4.128 31 C -0.173 4.173 32 C -0.111 4.111 33 C -0.123 4.123 34 H 0.240 0.760 35 H 0.108 0.892 36 H -0.230 1.230 37 H -0.200 1.200 38 H 0.226 0.774 39 H 0.159 0.841 40 H 0.184 0.816 41 H 0.259 0.741 42 H 0.113 0.887 43 H 0.116 0.884 44 H 0.162 0.838 45 H 0.152 0.848 46 H 0.352 0.648 47 H 0.151 0.849 48 H 0.171 0.829 49 H 0.111 0.889 50 H 0.086 0.914 51 H 0.152 0.848 52 H 0.162 0.838 53 H 0.152 0.848 54 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 4.101 4.263 -5.088 7.803 hybrid contribution -0.615 -1.053 -0.115 1.225 sum 3.486 3.210 -5.203 7.037 Atomic orbital electron populations 1.86441 1.18360 1.82433 1.49995 1.24704 0.84360 1.11053 0.95521 0.93993 0.77471 0.73475 0.85148 1.20791 1.11555 0.91865 0.99154 1.22087 0.98971 0.95313 0.88075 1.43444 1.53292 1.03718 1.14383 1.22008 0.93840 1.09228 0.78700 1.21378 0.90380 0.75851 0.84301 1.90810 1.22289 1.49805 1.81710 1.45472 1.11376 1.72197 1.05640 1.21840 0.92031 0.97305 0.87643 0.90064 1.23364 1.02400 0.96218 0.94101 1.21689 1.00993 0.97059 0.88698 0.86099 1.20084 0.92835 0.96115 0.95896 1.21145 0.97515 1.00626 0.94605 1.21247 0.98547 0.97346 0.93188 1.17421 0.95393 1.07389 0.84478 1.24081 0.84389 1.01445 0.97239 1.74897 1.25465 1.21990 0.92849 1.47816 1.08056 1.43453 1.06027 1.78880 0.90990 1.15201 1.20404 1.76063 1.27146 1.18729 0.94857 1.21299 0.95065 0.97100 0.96860 1.21259 1.00485 0.99957 0.91655 1.23608 1.00457 0.97566 0.96716 1.18371 1.01755 0.87114 0.94119 1.20250 1.04860 0.89117 1.01005 1.21119 0.98360 0.99092 0.94276 1.20898 1.02411 0.96945 0.97073 1.20435 0.99252 0.91898 0.99488 1.19382 1.03777 0.93953 0.95150 0.76031 0.89187 1.22992 1.19980 0.77376 0.84071 0.81584 0.74094 0.88746 0.88361 0.83758 0.84849 0.64766 0.84906 0.82897 0.88905 0.91359 0.84785 0.83770 0.84806 0.86752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -3.57 12.88 -148.98 -1.92 -5.49 16 2 C -0.05 -0.19 3.06 71.24 0.22 0.02 16 3 Si 0.80 -1.37 30.75 68.60 2.11 0.74 16 4 C -0.23 -1.20 5.58 -18.63 -0.10 -1.30 16 5 C 0.08 -0.04 9.89 83.00 0.82 0.78 16 6 N -0.47 -0.09 2.27 -519.98 -1.18 -1.27 16 7 C 0.09 -0.81 6.48 85.64 0.56 -0.25 16 8 C 0.50 -1.90 7.90 87.66 0.69 -1.20 16 9 O -0.57 -4.59 16.02 -3.01 -0.05 -4.64 16 10 N -0.69 6.98 5.27 -439.61 -2.32 4.67 16 11 C 0.12 -0.83 4.33 45.61 0.20 -0.63 16 12 H 0.08 -0.10 7.46 -2.39 -0.02 -0.11 16 13 C -0.12 1.31 7.29 31.12 0.23 1.53 16 14 C -0.07 0.67 3.85 -11.01 -0.04 0.63 16 15 H 0.12 -1.67 8.08 -2.39 -0.02 -1.69 16 16 C -0.05 0.27 5.29 -19.83 -0.10 0.17 16 17 C -0.12 0.46 8.53 22.24 0.19 0.65 16 18 C -0.08 0.02 9.70 22.48 0.22 0.23 16 19 C -0.04 -0.12 5.88 -20.04 -0.12 -0.24 16 20 C 0.21 1.21 7.94 137.38 1.09 2.31 16 21 N -0.30 -0.99 12.08 -52.13 -0.63 -1.62 16 22 N -0.20 0.16 7.90 37.02 0.29 0.45 16 23 N -0.06 -0.30 13.47 37.02 0.50 0.20 16 24 N -0.30 -2.38 12.23 -52.18 -0.64 -3.02 16 25 C -0.08 -0.01 9.70 22.48 0.22 0.20 16 26 C -0.12 0.52 9.69 22.24 0.22 0.74 16 27 C -0.14 1.01 7.28 31.21 0.23 1.23 16 28 C 0.09 0.61 6.80 39.03 0.27 0.88 16 29 C -0.13 -0.64 10.00 22.37 0.22 -0.42 16 30 C -0.11 -0.56 10.01 22.30 0.22 -0.33 16 31 C -0.15 -1.12 9.97 22.03 0.22 -0.90 16 32 C -0.09 -0.95 10.05 22.23 0.22 -0.73 16 33 C -0.12 -1.19 6.35 -20.20 -0.13 -1.32 16 34 H 0.39 -0.49 8.70 -74.06 -0.64 -1.13 16 35 H 0.09 0.61 7.96 -2.38 -0.02 0.59 16 36 H -0.30 -1.85 7.11 99.48 0.71 -1.14 16 37 H -0.27 -0.35 7.11 99.48 0.71 0.36 16 38 H 0.21 -2.01 6.34 -2.91 -0.02 -2.03 16 39 H 0.14 -1.95 8.14 -2.38 -0.02 -1.97 16 40 H 0.17 -2.97 8.12 -2.39 -0.02 -2.99 16 41 H 0.42 -7.32 8.70 -92.71 -0.81 -8.12 16 42 H 0.09 -1.23 8.14 -2.39 -0.02 -1.25 16 43 H 0.10 -0.94 7.65 -2.38 -0.02 -0.96 16 44 H 0.14 -1.02 6.70 -2.91 -0.02 -1.04 16 45 H 0.13 -0.14 7.88 -2.91 -0.02 -0.17 16 46 H 0.49 -5.10 8.96 -347.54 -3.12 -8.21 16 47 H 0.13 0.03 7.89 -2.91 -0.02 0.00 16 48 H 0.15 -1.46 8.05 -2.91 -0.02 -1.48 16 49 H 0.09 -0.56 6.37 -2.39 -0.02 -0.57 16 50 H 0.07 -0.34 8.14 -2.39 -0.02 -0.36 16 51 H 0.13 -0.04 8.06 -2.91 -0.02 -0.06 16 52 H 0.14 0.00 8.06 -2.91 -0.02 -0.03 16 53 H 0.13 0.45 8.06 -2.91 -0.02 0.43 16 54 H 0.11 1.13 8.06 -2.91 -0.02 1.10 16 Total: 0.00 -36.96 458.17 -1.82 -38.78 By element: Atomic # 1 Polarization: -27.34 SS G_CDS: -3.52 Total: -30.86 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: 5.53 Total: 2.06 kcal Atomic # 7 Polarization: 3.37 SS G_CDS: -3.97 Total: -0.60 kcal Atomic # 8 Polarization: -8.16 SS G_CDS: -1.97 Total: -10.13 kcal Atomic # 14 Polarization: -1.37 SS G_CDS: 2.11 Total: 0.74 kcal Total: -36.96 -1.82 -38.78 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_280130_17857820_17875166.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 223.767 kcal (2) G-P(sol) polarization free energy of solvation -36.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 186.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 184.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds