Wall clock time and date at job start Fri Mar 5 2021 21:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86298 * 109.47037 * 2 1 4 4 C 1.50695 * 109.47211 * 240.00009 * 2 1 3 5 5 C 1.32777 * 124.71408 * 300.32739 * 4 2 1 6 6 C 1.44421 * 113.08353 * 180.18359 * 5 4 2 7 7 C 1.47192 * 123.45756 * 179.80950 * 6 5 4 8 8 O 1.21635 * 120.00260 * 359.72293 * 7 6 5 9 9 N 1.34780 * 119.99694 * 179.72440 * 7 6 5 10 10 C 1.46497 * 119.99769 * 179.97438 * 9 7 6 11 11 H 1.08997 * 112.85099 * 336.19494 * 10 9 7 12 12 C 1.53779 * 113.69123 * 107.46801 * 10 9 7 13 13 C 1.53779 * 87.08402 * 89.12592 * 12 10 9 14 14 H 1.09002 * 113.61557 * 270.88569 * 13 12 10 15 15 C 1.50699 * 113.61429 * 139.98140 * 13 12 10 16 16 C 1.38308 * 119.88170 * 322.22795 * 15 13 12 17 17 C 1.38041 * 120.11657 * 179.76552 * 16 15 13 18 18 C 1.39297 * 119.87786 * 0.53269 * 17 16 15 19 19 C 1.48459 * 120.11639 * 179.74742 * 18 17 16 20 20 N 1.31812 * 126.67382 * 359.97192 * 19 18 17 21 21 N 1.28869 * 107.81793 * 179.97438 * 20 19 18 22 22 N 1.28724 * 109.32155 * 0.02562 * 21 20 19 23 23 N 1.28990 * 108.93973 * 359.71842 * 22 21 20 24 24 C 1.39301 * 119.76669 * 359.72042 * 18 17 16 25 25 C 1.38026 * 119.88193 * 0.02562 * 24 18 17 26 26 C 1.53784 * 87.08045 * 25.43458 * 13 12 10 27 27 C 1.36005 * 113.08109 * 359.53315 * 6 5 4 28 28 S 1.70448 * 110.81596 * 0.25155 * 27 6 5 29 29 H 0.96699 * 114.00038 * 300.00326 * 1 2 3 30 30 H 1.09004 * 109.46969 * 120.00317 * 2 1 3 31 31 H 1.48504 * 109.99915 * 178.67739 * 3 2 1 32 32 H 1.48495 * 110.00336 * 299.99930 * 3 2 1 33 33 H 1.08003 * 123.45335 * 359.97438 * 5 4 2 34 34 H 0.96998 * 119.99913 * 0.02562 * 9 7 6 35 35 H 1.09006 * 113.61280 * 203.67416 * 12 10 9 36 36 H 1.08999 * 113.61062 * 334.49170 * 12 10 9 37 37 H 1.07998 * 119.94671 * 0.02562 * 16 15 13 38 38 H 1.07998 * 120.05636 * 180.25397 * 17 16 15 39 39 H 0.97005 * 125.34077 * 180.02562 * 21 20 19 40 40 H 1.08004 * 120.05747 * 180.02562 * 24 18 17 41 41 H 1.08002 * 119.94144 * 179.97438 * 25 24 18 42 42 H 1.09004 * 113.61451 * 220.02152 * 26 13 12 43 43 H 1.08994 * 113.61477 * 89.11454 * 26 13 12 44 44 H 1.08001 * 124.59620 * 180.28470 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 1.6638 -1.9745 -1.5359 6 6 2.2774 -2.4005 -2.7719 7 6 2.1342 -3.7576 -3.3235 8 8 1.4750 -4.5893 -2.7292 9 7 2.7336 -4.0787 -4.4872 10 6 2.5915 -5.4295 -5.0360 11 1 2.3580 -6.1734 -4.2743 12 6 1.6758 -5.5023 -6.2693 13 6 2.9292 -5.2319 -7.1183 14 1 3.1265 -4.1722 -7.2804 15 6 2.9832 -6.0398 -8.3893 16 6 2.5357 -7.3485 -8.3934 17 6 2.5785 -8.0914 -9.5561 18 6 3.0838 -7.5243 -10.7237 19 6 3.1375 -8.3203 -11.9758 20 7 2.7452 -9.5690 -12.1322 21 7 2.9546 -9.8971 -13.3607 22 7 3.4673 -8.8964 -13.9874 23 7 3.5890 -7.9073 -13.1684 24 6 3.5380 -6.2075 -10.7127 25 6 3.4858 -5.4719 -9.5459 26 6 3.7451 -5.8412 -5.9659 27 6 2.9963 -1.4171 -3.3769 28 16 2.9452 0.0205 -2.4626 29 1 -0.3933 0.4417 0.7650 30 1 1.7923 -0.5139 0.8900 31 1 3.5346 1.7703 0.0322 32 1 1.5615 2.4679 -1.2084 33 1 1.0530 -2.6191 -0.9212 34 1 3.2596 -3.4155 -4.9610 35 1 1.2418 -6.4887 -6.4333 36 1 0.9368 -4.7023 -6.3122 37 1 2.1483 -7.7887 -7.4865 38 1 2.2251 -9.1119 -9.5592 39 1 2.7567 -10.7624 -13.7520 40 1 3.9303 -5.7630 -11.6154 41 1 3.8381 -4.4510 -9.5362 42 1 4.6776 -5.3139 -5.7646 43 1 3.8768 -6.9201 -6.0469 44 1 3.5271 -1.5314 -4.3105 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_280130_17857820_17900784.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 21:53:16 Heat of formation + Delta-G solvation = 147.656741 kcal Electronic energy + Delta-G solvation = -30135.769465 eV Core-core repulsion = 25764.307911 eV Total energy + Delta-G solvation = -4371.461554 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 384.104 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -45.51466 -41.70040 -40.60498 -39.19360 -38.49507 -37.16781 -35.53607 -34.99086 -34.23365 -32.09333 -31.98684 -31.24729 -27.18085 -26.98608 -26.69298 -25.80304 -25.68359 -24.18476 -23.47583 -22.25762 -22.05990 -20.59089 -20.42021 -20.05845 -18.67598 -18.42957 -18.28651 -18.19942 -17.92156 -17.06991 -16.51549 -16.33746 -16.23849 -16.03512 -15.69806 -15.41587 -15.15245 -14.91183 -14.57543 -14.42195 -14.32472 -14.17497 -13.97653 -13.91675 -13.79136 -13.64386 -13.42185 -13.35188 -13.09533 -12.67785 -12.46554 -12.40625 -12.36928 -12.14805 -12.10433 -12.08673 -11.80755 -11.51926 -11.21554 -11.14151 -10.50030 -10.21703 -9.98745 -9.92932 -9.59920 -9.47683 -5.18943 -0.44453 -0.33470 0.12057 0.28532 0.42872 0.63230 0.74961 1.20596 1.26068 1.37406 1.60418 1.89170 2.00330 2.18199 2.64233 2.75605 3.12548 3.33936 3.45465 3.67669 3.68482 3.71260 3.82855 3.91210 3.96278 4.02320 4.02938 4.17188 4.19451 4.27659 4.37166 4.43066 4.44791 4.55864 4.62171 4.65113 4.79291 4.84152 4.89135 4.92679 4.94529 5.03742 5.08485 5.12264 5.15731 5.37369 5.45001 5.51143 5.55080 5.68270 5.92563 6.40656 6.84470 7.06012 7.09055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.564 6.564 2 C -0.050 4.050 3 Si 0.757 3.243 4 C -0.212 4.212 5 C -0.071 4.071 6 C -0.179 4.179 7 C 0.581 3.419 8 O -0.578 6.578 9 N -0.692 5.692 10 C 0.112 3.888 11 H 0.087 0.913 12 C -0.143 4.143 13 C -0.067 4.067 14 H 0.117 0.883 15 C -0.048 4.048 16 C -0.120 4.120 17 C -0.082 4.082 18 C -0.043 4.043 19 C 0.208 3.792 20 N -0.299 5.299 21 N -0.202 5.202 22 N -0.059 5.059 23 N -0.296 5.296 24 C -0.082 4.082 25 C -0.117 4.117 26 C -0.122 4.122 27 C -0.181 4.181 28 S 0.184 5.816 29 H 0.406 0.594 30 H 0.101 0.899 31 H -0.260 1.260 32 H -0.273 1.273 33 H 0.142 0.858 34 H 0.415 0.585 35 H 0.101 0.899 36 H 0.066 0.934 37 H 0.147 0.853 38 H 0.136 0.864 39 H 0.494 0.506 40 H 0.134 0.866 41 H 0.151 0.849 42 H 0.090 0.910 43 H 0.105 0.895 44 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.382 3.388 2.599 4.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.375 6.375 2 C -0.161 4.161 3 Si 0.659 3.341 4 C -0.328 4.328 5 C -0.100 4.100 6 C -0.197 4.197 7 C 0.368 3.632 8 O -0.459 6.459 9 N -0.344 5.344 10 C 0.007 3.993 11 H 0.105 0.895 12 C -0.182 4.182 13 C -0.085 4.085 14 H 0.135 0.865 15 C -0.049 4.049 16 C -0.138 4.138 17 C -0.102 4.102 18 C -0.046 4.046 19 C -0.071 4.071 20 N -0.151 5.151 21 N -0.053 5.053 22 N -0.054 5.054 23 N -0.168 5.168 24 C -0.102 4.102 25 C -0.135 4.135 26 C -0.160 4.160 27 C -0.319 4.319 28 S 0.450 5.550 29 H 0.257 0.743 30 H 0.119 0.881 31 H -0.185 1.185 32 H -0.199 1.199 33 H 0.159 0.841 34 H 0.252 0.748 35 H 0.120 0.880 36 H 0.085 0.915 37 H 0.164 0.836 38 H 0.154 0.846 39 H 0.353 0.647 40 H 0.152 0.848 41 H 0.169 0.831 42 H 0.109 0.891 43 H 0.123 0.877 44 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 3.257 4.389 1.170 5.589 hybrid contribution -0.825 -2.503 -0.310 2.654 sum 2.431 1.886 0.860 3.195 Atomic orbital electron populations 1.86468 1.17033 1.82528 1.51455 1.24312 0.85979 1.10927 0.94895 0.93614 0.79161 0.75283 0.86068 1.23807 1.08164 0.97818 1.03018 1.21050 0.98535 0.94882 0.95498 1.20178 1.06060 0.94934 0.98489 1.17758 0.78414 0.86398 0.80675 1.90793 1.42214 1.51587 1.61267 1.45370 1.52475 1.14110 1.22414 1.21922 0.98341 0.83862 0.95201 0.89483 1.23582 0.96604 1.03540 0.94453 1.21662 0.96867 0.99920 0.90065 0.86542 1.20027 0.95812 0.94055 0.95008 1.21155 1.00413 0.94009 0.98233 1.21256 0.97063 1.00592 0.91259 1.17417 1.05673 0.93548 0.87951 1.24052 0.98926 0.89023 0.95143 1.74895 1.22907 1.15801 1.01512 1.47815 1.37586 1.15921 1.03988 1.78879 1.12303 0.92178 1.22084 1.76064 1.20172 1.20642 0.99944 1.21283 0.97221 0.92177 0.99567 1.21240 0.99881 1.01090 0.91244 1.23390 0.97133 1.02949 0.92545 1.26140 1.02937 0.97321 1.05518 1.83193 1.46674 1.12382 1.12784 0.74257 0.88147 1.18532 1.19889 0.84063 0.74760 0.88047 0.91505 0.83562 0.84631 0.64737 0.84844 0.83118 0.89132 0.87659 0.77473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.13 12.82 -148.98 -1.91 -2.04 16 2 C -0.05 0.04 2.94 71.23 0.21 0.25 16 3 Si 0.76 -3.03 30.91 68.60 2.12 -0.91 16 4 C -0.21 -0.90 5.72 24.51 0.14 -0.76 16 5 C -0.07 -0.53 9.91 22.67 0.22 -0.30 16 6 C -0.18 -0.87 5.98 -19.87 -0.12 -0.99 16 7 C 0.58 4.07 7.79 86.59 0.67 4.74 16 8 O -0.58 -9.25 16.40 -4.14 -0.07 -9.31 16 9 N -0.69 0.89 5.24 -443.52 -2.32 -1.43 16 10 C 0.11 -0.19 4.32 45.52 0.20 0.00 16 11 H 0.09 0.27 7.46 -2.39 -0.02 0.25 16 12 C -0.14 0.46 7.25 31.12 0.23 0.68 16 13 C -0.07 0.43 3.86 -11.01 -0.04 0.39 16 14 H 0.12 -1.11 8.09 -2.39 -0.02 -1.13 16 15 C -0.05 0.16 5.29 -19.83 -0.10 0.05 16 16 C -0.12 0.26 8.58 22.24 0.19 0.45 16 17 C -0.08 -0.08 9.70 22.48 0.22 0.14 16 18 C -0.04 -0.17 5.88 -20.04 -0.12 -0.29 16 19 C 0.21 1.41 7.94 137.38 1.09 2.50 16 20 N -0.30 -1.22 12.08 -52.13 -0.63 -1.85 16 21 N -0.20 0.02 7.90 37.02 0.29 0.31 16 22 N -0.06 -0.35 13.47 37.02 0.50 0.15 16 23 N -0.30 -2.65 12.23 -52.18 -0.64 -3.29 16 24 C -0.08 -0.14 9.70 22.48 0.22 0.08 16 25 C -0.12 0.27 9.69 22.24 0.22 0.49 16 26 C -0.12 0.81 7.29 31.12 0.23 1.03 16 27 C -0.18 0.27 10.38 67.30 0.70 0.96 16 28 S 0.18 0.14 20.18 -56.49 -1.14 -1.00 16 29 H 0.41 -4.35 8.74 -74.06 -0.65 -5.00 16 30 H 0.10 -0.45 7.96 -2.38 -0.02 -0.47 16 31 H -0.26 0.09 7.11 99.48 0.71 0.80 16 32 H -0.27 -0.65 7.11 99.48 0.71 0.06 16 33 H 0.14 1.40 8.06 -2.91 -0.02 1.38 16 34 H 0.41 -3.33 7.20 -92.71 -0.67 -3.99 16 35 H 0.10 -0.39 6.31 -2.38 -0.02 -0.41 16 36 H 0.07 -0.05 8.14 -2.39 -0.02 -0.07 16 37 H 0.15 -0.82 6.66 -2.91 -0.02 -0.84 16 38 H 0.14 -0.03 7.88 -2.91 -0.02 -0.05 16 39 H 0.49 -4.80 8.96 -347.54 -3.12 -7.92 16 40 H 0.13 0.22 7.89 -2.91 -0.02 0.19 16 41 H 0.15 -1.06 8.05 -2.91 -0.02 -1.08 16 42 H 0.09 -0.76 8.14 -2.39 -0.02 -0.78 16 43 H 0.11 -0.72 7.71 -2.39 -0.02 -0.74 16 44 H 0.21 -2.07 7.01 -2.91 -0.02 -2.09 16 Total: 0.00 -28.89 391.93 -2.93 -31.82 By element: Atomic # 1 Polarization: -18.61 SS G_CDS: -3.28 Total: -21.88 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: 4.15 Total: 9.44 kcal Atomic # 7 Polarization: -3.31 SS G_CDS: -2.80 Total: -6.11 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: -1.98 Total: -11.36 kcal Atomic # 14 Polarization: -3.03 SS G_CDS: 2.12 Total: -0.91 kcal Atomic # 16 Polarization: 0.14 SS G_CDS: -1.14 Total: -1.00 kcal Total: -28.89 -2.93 -31.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_280130_17857820_17900784.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.479 kcal (2) G-P(sol) polarization free energy of solvation -28.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds