Wall clock time and date at job start Fri Mar 5 2021 21:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35962 * 116.99627 * 2 1 4 4 C 1.39449 * 120.11937 * 180.02562 * 3 2 1 5 5 O 1.34777 * 133.24225 * 0.37830 * 4 3 2 6 6 C 1.34931 * 110.84085 * 180.10749 * 5 4 3 7 7 C 1.46992 * 125.13826 * 179.81532 * 6 5 4 8 8 O 1.21653 * 120.00323 * 179.69317 * 7 6 5 9 9 N 1.34784 * 119.99888 * 359.69902 * 7 6 5 10 10 C 1.46500 * 119.99516 * 179.97438 * 9 7 6 11 11 H 1.09004 * 112.85321 * 23.80614 * 10 9 7 12 12 C 1.53784 * 113.60988 * 154.99768 * 10 9 7 13 13 C 1.53788 * 87.08099 * 89.11907 * 12 10 9 14 14 H 1.09002 * 113.61156 * 270.80006 * 13 12 10 15 15 C 1.50691 * 113.61785 * 139.98020 * 13 12 10 16 16 C 1.38318 * 119.88167 * 119.99680 * 15 13 12 17 17 C 1.38028 * 120.11468 * 180.02562 * 16 15 13 18 18 C 1.39299 * 119.88725 * 0.02562 * 17 16 15 19 19 C 1.48457 * 120.12029 * 180.02562 * 18 17 16 20 20 N 1.31814 * 126.67490 * 180.02562 * 19 18 17 21 21 N 1.28874 * 107.81899 * 179.73612 * 20 19 18 22 22 N 1.28727 * 109.31728 * 359.97438 * 21 20 19 23 23 N 1.28991 * 108.94656 * 359.97438 * 22 21 20 24 24 C 1.39306 * 119.75832 * 0.27656 * 18 17 16 25 25 C 1.38024 * 119.88297 * 359.44783 * 24 18 17 26 26 C 1.53777 * 87.07935 * 25.42924 * 13 12 10 27 27 C 1.35804 * 109.71931 * 359.55037 * 6 5 4 28 28 C 1.40610 * 119.14077 * 180.02562 * 4 3 2 29 29 C 1.39784 * 120.11417 * 359.97438 * 28 4 3 30 30 C 1.50707 * 120.09088 * 179.97438 * 29 28 4 31 31 O 1.42902 * 109.46932 * 285.00040 * 30 29 28 32 32 Si 1.86298 * 109.47139 * 165.00147 * 30 29 28 33 33 C 1.36631 * 119.81508 * 359.97438 * 29 28 4 34 34 C 1.38265 * 120.12586 * 0.02562 * 3 2 1 35 35 H 1.09003 * 109.47164 * 300.00451 * 1 2 3 36 36 H 1.08994 * 109.47417 * 60.00491 * 1 2 3 37 37 H 1.09002 * 109.47149 * 180.02562 * 1 2 3 38 38 H 0.96994 * 120.00304 * 359.97438 * 9 7 6 39 39 H 1.09002 * 113.61565 * 334.57362 * 12 10 9 40 40 H 1.08998 * 113.61630 * 203.65937 * 12 10 9 41 41 H 1.07998 * 119.93964 * 0.02562 * 16 15 13 42 42 H 1.08003 * 120.05789 * 179.97438 * 17 16 15 43 43 H 0.96997 * 125.33799 * 180.02562 * 21 20 19 44 44 H 1.08000 * 120.05146 * 179.72223 * 24 18 17 45 45 H 1.08001 * 119.94195 * 180.27689 * 25 24 18 46 46 H 1.09007 * 113.61297 * 89.11920 * 26 13 12 47 47 H 1.09001 * 113.61984 * 220.01789 * 26 13 12 48 48 H 1.08007 * 126.95308 * 180.23911 * 27 6 5 49 49 H 1.09003 * 109.47178 * 45.00093 * 30 29 28 50 50 H 0.96696 * 113.99839 * 180.02562 * 31 30 29 51 51 H 1.48500 * 110.00015 * 298.68325 * 32 30 29 52 52 H 1.48499 * 109.99951 * 59.99697 * 32 30 29 53 53 H 1.08000 * 119.74833 * 179.97438 * 33 29 28 54 54 H 1.08003 * 119.65820 * 0.02562 * 34 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 3.4386 1.2874 -0.0005 5 8 4.4140 0.3574 -0.0076 6 6 5.6317 0.9388 -0.0022 7 6 6.9131 0.2186 -0.0035 8 8 7.9595 0.8390 -0.0039 9 7 6.9286 -1.1291 -0.0044 10 6 8.2058 -1.8468 -0.0063 11 1 9.0255 -1.2533 0.3986 12 6 8.1177 -3.2623 0.5884 13 6 7.7796 -3.7520 -0.8296 14 1 6.7128 -3.7402 -1.0529 15 6 8.4385 -5.0584 -1.1903 16 6 7.6614 -6.1536 -1.5220 17 6 8.2598 -7.3527 -1.8526 18 6 9.6487 -7.4589 -1.8513 19 6 10.2978 -8.7460 -2.2066 20 7 11.5925 -8.9901 -2.2466 21 7 11.7511 -10.2217 -2.5915 22 7 10.5982 -10.7656 -2.7707 23 7 9.6810 -9.8879 -2.5420 24 6 10.4264 -6.3546 -1.5102 25 6 9.8179 -5.1586 -1.1868 26 6 8.5337 -2.5173 -1.3508 27 6 5.4943 2.2899 -0.0013 28 6 4.0554 2.5511 0.0000 29 6 3.2764 3.7117 0.0006 30 6 3.9380 5.0658 0.0017 31 8 4.4600 5.3397 1.3035 32 14 2.6864 6.3689 -0.4523 33 6 1.9135 3.6151 0.0000 34 6 1.2956 2.3727 0.0005 35 1 -0.3634 0.5139 0.8900 36 1 -0.3634 0.5137 -0.8900 37 1 -0.3633 -1.0277 0.0005 38 1 6.0943 -1.6238 -0.0038 39 1 7.3012 -3.3871 1.2997 40 1 9.0693 -3.6378 0.9646 41 1 6.5847 -6.0703 -1.5223 42 1 7.6522 -8.2073 -2.1111 43 1 12.6052 -10.6688 -2.6984 44 1 11.5035 -6.4329 -1.5033 45 1 10.4200 -4.3006 -0.9266 46 1 9.5990 -2.6891 -1.5048 47 1 8.0531 -2.0405 -2.2052 48 1 6.2874 3.0231 -0.0010 49 1 4.7507 5.0737 -0.7247 50 1 4.9005 6.1972 1.3781 51 1 2.1593 6.1132 -1.8169 52 1 1.5732 6.3682 0.5304 53 1 1.3127 4.5126 0.0009 54 1 0.2173 2.3120 0.0014 There are 81 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 81 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_280130_17857820_17934800.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 21:54:09 Heat of formation + Delta-G solvation = 120.058028 kcal Electronic energy + Delta-G solvation = -41818.913912 eV Core-core repulsion = 36307.749058 eV Total energy + Delta-G solvation = -5511.164854 eV No. of doubly occupied orbitals = 81 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 448.163 amu Computer time = 2.32 seconds Orbital eigenvalues (eV) -45.50748 -43.85551 -41.65847 -40.83635 -40.31357 -39.04547 -38.93230 -37.11083 -35.54821 -35.02553 -34.24431 -33.75517 -32.14367 -31.98020 -31.62844 -30.97205 -28.68116 -27.09326 -26.69802 -26.29706 -25.79502 -25.31400 -24.15247 -24.12642 -23.44867 -22.24497 -22.08266 -21.76477 -20.40773 -20.09493 -19.87117 -19.01038 -18.53767 -18.42825 -18.19295 -18.01835 -17.80633 -17.31588 -17.12969 -16.69335 -16.56530 -16.38846 -16.29629 -15.87747 -15.77070 -15.45742 -15.36335 -15.01949 -14.85057 -14.67955 -14.54648 -14.38573 -14.32326 -14.18511 -14.15426 -14.00000 -13.68197 -13.50716 -13.43024 -13.36651 -13.21312 -13.09213 -12.59435 -12.46359 -12.43351 -12.39413 -12.18458 -12.13390 -12.09815 -11.92119 -11.86222 -11.60115 -11.52875 -11.22570 -11.11145 -10.33473 -10.29224 -9.95683 -9.92039 -9.47438 -9.13218 -4.92022 -0.77176 -0.32930 -0.07219 0.12552 0.43571 0.51920 1.08071 1.26660 1.29381 1.37955 1.67502 1.82169 1.83238 1.95442 2.01847 2.23161 2.64717 2.76190 3.07302 3.13224 3.31919 3.42892 3.43519 3.63600 3.66051 3.69383 3.70519 3.86349 3.91597 3.97320 4.01732 4.03652 4.04535 4.17803 4.19754 4.27132 4.31577 4.33326 4.34235 4.37567 4.45467 4.55727 4.60607 4.66619 4.71529 4.72951 4.79803 4.82428 4.89775 4.90511 4.91055 5.04071 5.07088 5.08996 5.13399 5.18309 5.36161 5.41764 5.45568 5.51003 5.55695 5.67669 5.93049 6.08832 6.22444 6.78986 6.90663 7.06583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.327 6.327 3 C 0.141 3.859 4 C 0.025 3.975 5 O -0.177 6.177 6 C -0.032 4.032 7 C 0.608 3.392 8 O -0.539 6.539 9 N -0.687 5.687 10 C 0.110 3.890 11 H 0.101 0.899 12 C -0.124 4.124 13 C -0.072 4.072 14 H 0.109 0.891 15 C -0.048 4.048 16 C -0.119 4.119 17 C -0.083 4.083 18 C -0.043 4.043 19 C 0.209 3.791 20 N -0.298 5.298 21 N -0.202 5.202 22 N -0.060 5.060 23 N -0.297 5.297 24 C -0.080 4.080 25 C -0.118 4.118 26 C -0.140 4.140 27 C -0.106 4.106 28 C -0.097 4.097 29 C -0.069 4.069 30 C -0.085 4.085 31 O -0.562 6.562 32 Si 0.781 3.219 33 C -0.107 4.107 34 C -0.171 4.171 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.122 0.878 38 H 0.417 0.583 39 H 0.085 0.915 40 H 0.112 0.888 41 H 0.147 0.853 42 H 0.132 0.868 43 H 0.494 0.506 44 H 0.138 0.862 45 H 0.151 0.849 46 H 0.109 0.891 47 H 0.068 0.932 48 H 0.182 0.818 49 H 0.086 0.914 50 H 0.403 0.597 51 H -0.286 1.286 52 H -0.281 1.281 53 H 0.143 0.857 54 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.565 3.560 -0.080 3.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.241 6.241 3 C 0.094 3.906 4 C -0.023 4.023 5 O -0.079 6.079 6 C -0.082 4.082 7 C 0.393 3.607 8 O -0.418 6.418 9 N -0.337 5.337 10 C 0.006 3.994 11 H 0.119 0.881 12 C -0.161 4.161 13 C -0.090 4.090 14 H 0.127 0.873 15 C -0.048 4.048 16 C -0.137 4.137 17 C -0.103 4.103 18 C -0.046 4.046 19 C -0.071 4.071 20 N -0.150 5.150 21 N -0.053 5.053 22 N -0.055 5.055 23 N -0.169 5.169 24 C -0.101 4.101 25 C -0.136 4.136 26 C -0.178 4.178 27 C -0.127 4.127 28 C -0.098 4.098 29 C -0.070 4.070 30 C -0.194 4.194 31 O -0.372 6.372 32 Si 0.685 3.315 33 C -0.124 4.124 34 C -0.190 4.190 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.140 0.860 38 H 0.254 0.746 39 H 0.104 0.896 40 H 0.130 0.870 41 H 0.164 0.836 42 H 0.150 0.850 43 H 0.353 0.647 44 H 0.156 0.844 45 H 0.169 0.831 46 H 0.128 0.872 47 H 0.087 0.913 48 H 0.199 0.801 49 H 0.104 0.896 50 H 0.254 0.746 51 H -0.212 1.212 52 H -0.208 1.208 53 H 0.161 0.839 54 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -1.813 2.364 -0.371 3.002 hybrid contribution 0.136 -0.872 -0.088 0.887 sum -1.677 1.492 -0.459 2.291 Atomic orbital electron populations 1.23505 0.75326 1.06285 1.02943 1.86146 1.24284 1.25334 1.88356 1.17864 0.86294 0.86613 0.99793 1.19128 0.88164 0.87214 1.07829 1.84016 1.12701 1.34775 1.76393 1.22042 0.83999 0.92783 1.09362 1.16557 0.84766 0.82752 0.76609 1.90894 1.31095 1.68153 1.51607 1.45543 1.10797 1.04732 1.72616 1.22071 0.85617 0.93285 0.98462 0.88093 1.23414 1.04553 0.92265 0.95903 1.21674 1.00318 0.90186 0.96830 0.87260 1.20007 0.93594 0.95014 0.96230 1.21224 1.01189 0.91631 0.99649 1.21262 0.92745 0.98920 0.97344 1.17417 0.93391 0.87797 1.05984 1.24043 0.86110 0.95891 1.01053 1.74893 1.19577 0.99910 1.20637 1.47815 1.11395 1.05296 1.40796 1.78880 0.88798 1.22140 1.15668 1.76072 1.24259 0.98963 1.17600 1.21272 1.00530 0.91558 0.96694 1.21166 0.94443 0.97668 1.00298 1.23587 1.02375 0.95018 0.96812 1.22875 0.94770 0.94637 1.00381 1.19611 0.93038 0.92417 1.04781 1.18879 0.92787 0.93376 1.01924 1.24950 1.06361 0.98726 0.89343 1.86468 1.78366 1.43818 1.28586 0.94051 0.76668 0.84608 0.76160 1.20679 0.93532 0.98250 0.99962 1.21266 1.01749 0.89655 1.06285 0.90986 0.90856 0.86012 0.74598 0.89637 0.86980 0.83557 0.84974 0.64740 0.84427 0.83115 0.87236 0.91293 0.80050 0.89558 0.74552 1.21246 1.20819 0.83938 0.80652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.06 9.81 113.37 1.11 1.05 16 2 O -0.33 -1.47 10.50 -93.12 -0.98 -2.45 16 3 C 0.14 0.89 6.70 22.57 0.15 1.04 16 4 C 0.02 0.24 7.35 23.14 0.17 0.41 16 5 O -0.18 -1.54 10.28 -13.45 -0.14 -1.68 16 6 C -0.03 -0.25 7.07 24.00 0.17 -0.08 16 7 C 0.61 4.15 7.80 86.54 0.67 4.83 16 8 O -0.54 -6.62 16.42 -4.20 -0.07 -6.69 16 9 N -0.69 -0.32 5.26 -443.69 -2.33 -2.65 16 10 C 0.11 -0.24 4.32 45.52 0.20 -0.04 16 11 H 0.10 0.05 7.46 -2.38 -0.02 0.03 16 12 C -0.12 0.73 7.29 31.12 0.23 0.96 16 13 C -0.07 0.39 3.85 -11.02 -0.04 0.34 16 14 H 0.11 -0.73 8.09 -2.39 -0.02 -0.75 16 15 C -0.05 0.13 5.29 -19.83 -0.10 0.02 16 16 C -0.12 0.14 9.69 22.24 0.22 0.35 16 17 C -0.08 -0.20 9.70 22.48 0.22 0.01 16 18 C -0.04 -0.18 5.88 -20.04 -0.12 -0.30 16 19 C 0.21 1.44 7.94 137.38 1.09 2.53 16 20 N -0.30 -1.20 12.08 -52.13 -0.63 -1.83 16 21 N -0.20 0.01 7.90 37.02 0.29 0.30 16 22 N -0.06 -0.36 13.47 37.02 0.50 0.14 16 23 N -0.30 -2.74 12.23 -52.18 -0.64 -3.38 16 24 C -0.08 -0.06 9.70 22.48 0.22 0.16 16 25 C -0.12 0.30 8.59 22.24 0.19 0.49 16 26 C -0.14 0.54 7.25 31.12 0.23 0.76 16 27 C -0.11 -0.84 10.68 23.79 0.25 -0.58 16 28 C -0.10 -0.85 6.16 -20.24 -0.12 -0.98 16 29 C -0.07 -0.43 5.30 -19.86 -0.11 -0.53 16 30 C -0.09 -0.03 2.70 71.24 0.19 0.16 16 31 O -0.56 -0.45 12.86 -148.98 -1.92 -2.36 16 32 Si 0.78 -2.60 30.20 68.60 2.07 -0.53 16 33 C -0.11 -0.45 8.62 22.02 0.19 -0.26 16 34 C -0.17 -0.42 9.03 22.40 0.20 -0.22 16 35 H 0.07 -0.50 7.66 -2.39 -0.02 -0.52 16 36 H 0.07 -0.53 7.66 -2.39 -0.02 -0.55 16 37 H 0.12 -0.97 8.14 -2.39 -0.02 -0.99 16 38 H 0.42 -1.11 8.42 -92.71 -0.78 -1.89 16 39 H 0.08 -0.54 8.14 -2.39 -0.02 -0.56 16 40 H 0.11 -0.81 7.71 -2.39 -0.02 -0.83 16 41 H 0.15 -0.72 8.05 -2.91 -0.02 -0.75 16 42 H 0.13 0.33 7.89 -2.91 -0.02 0.31 16 43 H 0.49 -4.79 8.96 -347.54 -3.12 -7.91 16 44 H 0.14 -0.11 7.88 -2.91 -0.02 -0.13 16 45 H 0.15 -1.03 6.65 -2.91 -0.02 -1.05 16 46 H 0.11 -0.62 6.30 -2.38 -0.02 -0.63 16 47 H 0.07 -0.10 8.14 -2.39 -0.02 -0.12 16 48 H 0.18 0.95 8.06 -2.91 -0.02 0.93 16 49 H 0.09 -0.21 7.96 -2.39 -0.02 -0.23 16 50 H 0.40 -4.01 8.74 -74.06 -0.65 -4.65 16 51 H -0.29 -0.57 7.11 99.48 0.71 0.14 16 52 H -0.28 -0.53 6.75 99.48 0.67 0.14 16 53 H 0.14 0.21 4.85 -2.91 -0.01 0.19 16 54 H 0.18 -0.77 6.26 -2.91 -0.02 -0.79 16 Total: 0.00 -29.47 458.81 -2.13 -31.60 By element: Atomic # 1 Polarization: -17.12 SS G_CDS: -3.49 Total: -20.61 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: 5.20 Total: 10.12 kcal Atomic # 7 Polarization: -4.61 SS G_CDS: -2.81 Total: -7.42 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: -3.10 Total: -13.17 kcal Atomic # 14 Polarization: -2.60 SS G_CDS: 2.07 Total: -0.53 kcal Total: -29.47 -2.13 -31.60 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_280130_17857820_17934800.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.661 kcal (2) G-P(sol) polarization free energy of solvation -29.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.32 seconds