Wall clock time and date at job start Sat Mar 6 2021 05:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86307 * 109.46559 * 2 1 4 4 C 1.50697 * 109.47231 * 240.00140 * 2 1 3 5 5 C 1.38711 * 120.02864 * 284.99429 * 4 2 1 6 6 O 1.35901 * 120.05327 * 359.97438 * 5 4 2 7 7 C 1.42904 * 116.99936 * 179.72432 * 6 5 4 8 8 C 1.50703 * 109.46869 * 180.02562 * 7 6 5 9 9 O 1.21280 * 120.00323 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99817 * 179.97438 * 8 7 6 11 11 C 1.46499 * 119.99940 * 180.02562 * 10 8 7 12 12 H 1.09004 * 112.91032 * 23.75105 * 11 10 8 13 13 C 1.53784 * 113.61434 * 155.00095 * 11 10 8 14 14 C 1.53787 * 87.07923 * 89.11404 * 13 11 10 15 15 H 1.09000 * 113.61529 * 270.88430 * 14 13 11 16 16 C 1.53005 * 113.61178 * 140.06478 * 14 13 11 17 17 C 1.50696 * 109.47053 * 175.00046 * 16 14 13 18 18 N 1.31038 * 126.55024 * 89.99789 * 17 16 14 19 19 N 1.28883 * 107.91531 * 180.02562 * 18 17 16 20 20 N 1.28776 * 109.10357 * 0.02562 * 19 18 17 21 21 N 1.29000 * 108.72821 * 359.72678 * 20 19 18 22 22 C 1.53779 * 113.61357 * 252.49697 * 11 10 8 23 23 C 1.38745 * 119.89020 * 179.72660 * 5 4 2 24 24 C 1.38124 * 119.94632 * 0.27593 * 23 5 4 25 25 C 1.38290 * 120.05449 * 0.02562 * 24 23 5 26 26 C 1.38170 * 120.02910 * 105.31545 * 4 2 1 27 27 H 0.96700 * 114.00324 * 299.99697 * 1 2 3 28 28 H 1.08994 * 109.47302 * 119.99391 * 2 1 3 29 29 H 1.48499 * 109.99912 * 299.99580 * 3 2 1 30 30 H 1.48491 * 110.00121 * 61.31832 * 3 2 1 31 31 H 1.08994 * 109.46996 * 60.00100 * 7 6 5 32 32 H 1.08990 * 109.47179 * 299.99909 * 7 6 5 33 33 H 0.97000 * 119.99785 * 0.02562 * 10 8 7 34 34 H 1.09004 * 113.61451 * 334.56890 * 13 11 10 35 35 H 1.08994 * 113.61477 * 203.66192 * 13 11 10 36 36 H 1.08995 * 109.46809 * 295.00307 * 16 14 13 37 37 H 1.09006 * 109.46737 * 54.99803 * 16 14 13 38 38 H 0.97002 * 125.44426 * 180.02562 * 19 18 17 39 39 H 1.09006 * 113.61307 * 156.33848 * 22 11 10 40 40 H 1.09007 * 113.61642 * 25.43606 * 22 11 10 41 41 H 1.08007 * 120.02759 * 180.25363 * 23 5 4 42 42 H 1.07997 * 119.97300 * 180.02562 * 24 23 5 43 43 H 1.07994 * 119.94465 * 179.97438 * 25 24 23 44 44 H 1.07996 * 119.97311 * 0.02562 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7566 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 1.8698 -2.0940 -1.3069 6 8 1.3570 -2.8107 -0.2724 7 6 1.3194 -4.2313 -0.4229 8 6 0.7229 -4.8518 0.8141 9 8 0.3649 -4.1470 1.7339 10 7 0.5864 -6.1901 0.8979 11 6 0.0061 -6.7933 2.1002 12 1 -0.6333 -6.1056 2.6537 13 6 -0.6379 -8.1673 1.8505 14 6 0.7418 -8.7797 2.1445 15 1 1.3747 -8.8739 1.2621 16 6 0.6780 -10.0664 2.9700 17 6 2.0614 -10.6501 3.0982 18 7 2.9312 -10.3953 4.0446 19 7 3.9925 -11.0858 3.8040 20 7 3.8148 -11.7706 2.7280 21 7 2.6325 -11.5276 2.2729 22 6 1.0341 -7.5228 2.9809 23 6 2.3279 -2.7447 -2.4435 24 6 2.8492 -2.0141 -3.4934 25 6 2.9152 -0.6352 -3.4122 26 6 2.4597 0.0156 -2.2807 27 1 -0.3934 0.4416 0.7650 28 1 1.7924 -0.5137 0.8900 29 1 1.5613 2.4679 -1.2085 30 1 1.5877 2.4586 1.2241 31 1 2.3318 -4.6083 -0.5670 32 1 0.7092 -4.4888 -1.2885 33 1 0.8725 -6.7537 0.1621 34 1 -0.9704 -8.3135 0.8228 35 1 -1.3987 -8.4328 2.5845 36 1 0.2846 -9.8427 3.9615 37 1 0.0251 -10.7845 2.4736 38 1 4.7965 -11.0892 4.3467 39 1 0.7303 -7.6121 4.0240 40 1 2.0515 -7.1486 2.8659 41 1 2.2773 -3.8217 -2.5071 42 1 3.2055 -2.5201 -4.3784 43 1 3.3235 -0.0657 -4.2339 44 1 2.5130 1.0925 -2.2193 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_280130_17857870_17858608.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 05:11:22 Heat of formation + Delta-G solvation = 78.556288 kcal Electronic energy + Delta-G solvation = -29113.788093 eV Core-core repulsion = 24844.400242 eV Total energy + Delta-G solvation = -4269.387851 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 346.147 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -45.45932 -41.70836 -41.06785 -39.62679 -38.38446 -37.63190 -35.64944 -34.97011 -34.09251 -32.89084 -31.35406 -30.57508 -29.12272 -26.67173 -26.66622 -25.56793 -24.99124 -23.64470 -22.70364 -22.50302 -21.85407 -20.39634 -19.99186 -19.32009 -18.60809 -18.33868 -18.06938 -17.44904 -17.34990 -16.89355 -16.79521 -16.25638 -15.80968 -15.70085 -15.47201 -15.23946 -15.13818 -15.09790 -14.86630 -14.61673 -13.95535 -13.86434 -13.80275 -13.61981 -13.39788 -13.10260 -13.03291 -12.66338 -12.65185 -12.43567 -12.26233 -12.14042 -12.05795 -11.82890 -11.79653 -11.61407 -11.30839 -11.06233 -10.97327 -10.45064 -10.15846 -9.97670 -9.22519 -4.97528 0.13936 0.22154 0.41225 1.07770 1.26805 1.38634 1.45690 1.51110 1.56017 1.88043 2.57058 2.65730 2.89822 3.30569 3.43110 3.49434 3.52730 3.63631 3.76485 3.86017 3.89424 3.92644 3.94336 4.04710 4.15415 4.24562 4.30423 4.33355 4.51452 4.52740 4.55563 4.63756 4.66243 4.77137 4.84487 4.87074 4.96567 4.97631 5.06603 5.15469 5.22378 5.27465 5.38280 5.51928 5.58025 5.62468 5.75043 6.25108 6.42625 6.55473 7.08462 7.22496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.556 6.556 2 C -0.086 4.086 3 Si 0.780 3.220 4 C -0.130 4.130 5 C 0.128 3.872 6 O -0.312 6.312 7 C 0.036 3.964 8 C 0.516 3.484 9 O -0.568 6.568 10 N -0.693 5.693 11 C 0.109 3.891 12 H 0.084 0.916 13 C -0.119 4.119 14 C -0.095 4.095 15 H 0.093 0.907 16 C -0.016 4.016 17 C 0.173 3.827 18 N -0.308 5.308 19 N -0.212 5.212 20 N -0.069 5.069 21 N -0.304 5.304 22 C -0.143 4.143 23 C -0.212 4.212 24 C -0.074 4.074 25 C -0.154 4.154 26 C -0.089 4.089 27 H 0.388 0.612 28 H 0.065 0.935 29 H -0.282 1.282 30 H -0.290 1.290 31 H 0.123 0.877 32 H 0.119 0.881 33 H 0.419 0.581 34 H 0.092 0.908 35 H 0.116 0.884 36 H 0.110 0.890 37 H 0.115 0.885 38 H 0.489 0.511 39 H 0.100 0.900 40 H 0.053 0.947 41 H 0.156 0.844 42 H 0.157 0.843 43 H 0.152 0.848 44 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.691 -3.777 -2.014 5.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.365 6.365 2 C -0.193 4.193 3 Si 0.684 3.316 4 C -0.130 4.130 5 C 0.082 3.918 6 O -0.225 6.225 7 C -0.042 4.042 8 C 0.302 3.698 9 O -0.446 6.446 10 N -0.347 5.347 11 C 0.004 3.996 12 H 0.102 0.898 13 C -0.157 4.157 14 C -0.115 4.115 15 H 0.111 0.889 16 C -0.056 4.056 17 C -0.110 4.110 18 N -0.161 5.161 19 N -0.062 5.062 20 N -0.064 5.064 21 N -0.177 5.177 22 C -0.182 4.182 23 C -0.230 4.230 24 C -0.092 4.092 25 C -0.172 4.172 26 C -0.107 4.107 27 H 0.237 0.763 28 H 0.083 0.917 29 H -0.209 1.209 30 H -0.217 1.217 31 H 0.141 0.859 32 H 0.137 0.863 33 H 0.257 0.743 34 H 0.110 0.890 35 H 0.134 0.866 36 H 0.128 0.872 37 H 0.134 0.866 38 H 0.347 0.653 39 H 0.119 0.881 40 H 0.072 0.928 41 H 0.174 0.826 42 H 0.174 0.826 43 H 0.170 0.830 44 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 3.713 -3.094 -1.902 5.194 hybrid contribution -0.749 -0.289 0.912 1.215 sum 2.964 -3.383 -0.990 4.606 Atomic orbital electron populations 1.86549 1.18956 1.80812 1.50223 1.25041 0.83861 1.12419 0.97995 0.94106 0.89875 0.71042 0.76625 1.18867 1.05611 0.90958 0.97607 1.19052 0.94187 0.91017 0.87526 1.86155 1.78166 1.18678 1.39462 1.22701 1.04442 0.79945 0.97103 1.20482 0.78188 0.82980 0.88167 1.90754 1.50169 1.62498 1.41218 1.45375 1.63419 1.05437 1.20479 1.21923 0.96134 0.95047 0.86524 0.89820 1.23330 0.96288 0.91429 1.04652 1.22511 0.98611 0.91866 0.98498 0.88890 1.20208 0.84927 0.96843 1.03579 1.26238 1.00383 0.95771 0.88559 1.74737 0.96199 1.19013 1.26105 1.47909 1.14879 1.25503 1.17908 1.78942 1.12835 1.15277 0.99338 1.75892 1.00309 1.16032 1.25465 1.23524 0.98986 0.95845 0.99857 1.21597 1.05639 1.01877 0.93920 1.21410 0.95448 0.94077 0.98293 1.21402 1.02159 0.95230 0.98440 1.21154 0.96800 1.00316 0.92406 0.76273 0.91663 1.20926 1.21723 0.85945 0.86301 0.74326 0.88987 0.86562 0.87195 0.86634 0.65308 0.88143 0.92842 0.82603 0.82582 0.83032 0.84049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -6.17 12.86 -148.98 -1.92 -8.09 16 2 C -0.09 -0.65 2.37 71.23 0.17 -0.49 16 3 Si 0.78 1.75 30.19 68.60 2.07 3.82 16 4 C -0.13 -0.98 5.31 -19.77 -0.10 -1.09 16 5 C 0.13 0.87 6.66 22.50 0.15 1.02 16 6 O -0.31 -2.84 9.00 -73.40 -0.66 -3.50 16 7 C 0.04 -0.01 5.22 71.24 0.37 0.36 16 8 C 0.52 2.29 7.91 87.66 0.69 2.98 16 9 O -0.57 -9.00 16.10 16.01 0.26 -8.74 16 10 N -0.69 2.20 5.26 -440.03 -2.32 -0.12 16 11 C 0.11 -0.27 4.32 45.52 0.20 -0.08 16 12 H 0.08 0.24 7.47 -2.39 -0.02 0.22 16 13 C -0.12 1.03 7.39 31.12 0.23 1.26 16 14 C -0.10 0.66 3.51 -10.26 -0.04 0.62 16 15 H 0.09 -0.59 8.12 -2.39 -0.02 -0.61 16 16 C -0.02 0.09 5.68 29.85 0.17 0.26 16 17 C 0.17 0.12 7.61 138.55 1.05 1.17 16 18 N -0.31 -0.22 12.36 -51.20 -0.63 -0.86 16 19 N -0.21 0.41 7.91 37.00 0.29 0.71 16 20 N -0.07 -0.24 13.48 37.02 0.50 0.26 16 21 N -0.30 -1.49 12.50 -51.26 -0.64 -2.13 16 22 C -0.14 0.47 7.43 31.12 0.23 0.70 16 23 C -0.21 -0.05 9.04 22.36 0.20 0.15 16 24 C -0.07 0.12 10.04 22.25 0.22 0.35 16 25 C -0.15 0.04 10.04 22.28 0.22 0.26 16 26 C -0.09 -0.30 8.66 22.26 0.19 -0.11 16 27 H 0.39 1.42 8.74 -74.06 -0.65 0.77 16 28 H 0.07 0.56 7.83 -2.39 -0.02 0.54 16 29 H -0.28 -1.84 6.76 99.48 0.67 -1.17 16 30 H -0.29 -1.92 7.11 99.48 0.71 -1.21 16 31 H 0.12 -0.84 7.66 -2.39 -0.02 -0.86 16 32 H 0.12 -0.71 7.66 -2.39 -0.02 -0.73 16 33 H 0.42 -4.21 8.70 -92.71 -0.81 -5.02 16 34 H 0.09 -0.95 8.14 -2.39 -0.02 -0.97 16 35 H 0.12 -1.25 8.10 -2.39 -0.02 -1.27 16 36 H 0.11 -0.90 7.85 -2.39 -0.02 -0.92 16 37 H 0.12 -0.96 8.14 -2.38 -0.02 -0.98 16 38 H 0.49 -5.06 8.96 -347.67 -3.12 -8.18 16 39 H 0.10 -0.39 7.90 -2.38 -0.02 -0.40 16 40 H 0.05 0.02 8.14 -2.38 -0.02 0.00 16 41 H 0.16 -0.99 6.30 -2.91 -0.02 -1.01 16 42 H 0.16 -1.17 8.06 -2.91 -0.02 -1.19 16 43 H 0.15 -0.80 8.06 -2.91 -0.02 -0.82 16 44 H 0.14 0.10 4.90 -2.91 -0.01 0.08 16 Total: 0.00 -32.43 375.45 -2.56 -34.99 By element: Atomic # 1 Polarization: -20.24 SS G_CDS: -3.48 Total: -23.72 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: 3.97 Total: 7.37 kcal Atomic # 7 Polarization: 0.66 SS G_CDS: -2.80 Total: -2.13 kcal Atomic # 8 Polarization: -18.01 SS G_CDS: -2.32 Total: -20.33 kcal Atomic # 14 Polarization: 1.75 SS G_CDS: 2.07 Total: 3.82 kcal Total: -32.43 -2.56 -34.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_280130_17857870_17858608.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.547 kcal (2) G-P(sol) polarization free energy of solvation -32.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds