Wall clock time and date at job start Sat Mar 6 2021 05:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86300 * 109.46725 * 2 1 4 4 C 1.50697 * 109.47191 * 240.00405 * 2 1 3 5 5 C 1.38264 * 119.94229 * 299.99197 * 4 2 1 6 6 C 1.38147 * 120.05887 * 180.02562 * 5 4 2 7 7 C 1.38737 * 119.94171 * 0.02562 * 6 5 4 8 8 O 1.35892 * 120.05362 * 180.02562 * 7 6 5 9 9 C 1.42905 * 116.99729 * 180.02562 * 8 7 6 10 10 C 1.50705 * 109.46842 * 179.97438 * 9 8 7 11 11 O 1.21278 * 120.00250 * 359.97438 * 10 9 8 12 12 N 1.34783 * 119.99542 * 179.97438 * 10 9 8 13 13 C 1.46502 * 119.99683 * 179.97438 * 12 10 9 14 14 H 1.09007 * 112.90475 * 23.75266 * 13 12 10 15 15 C 1.53779 * 113.61301 * 154.99921 * 13 12 10 16 16 C 1.53787 * 87.07963 * 89.11687 * 15 13 12 17 17 H 1.08994 * 113.61447 * 270.88515 * 16 15 13 18 18 C 1.52997 * 113.61251 * 139.97890 * 16 15 13 19 19 C 1.50698 * 109.46976 * 175.00203 * 18 16 15 20 20 N 1.31041 * 126.54884 * 90.00383 * 19 18 16 21 21 N 1.28888 * 107.91628 * 179.97438 * 20 19 18 22 22 N 1.28781 * 109.09973 * 0.02562 * 21 20 19 23 23 N 1.28994 * 108.73105 * 359.72148 * 22 21 20 24 24 C 1.53779 * 113.61564 * 252.49989 * 13 12 10 25 25 C 1.38727 * 119.88657 * 0.27421 * 7 6 5 26 26 C 1.38151 * 119.94383 * 359.42881 * 25 7 6 27 27 H 0.96705 * 114.00128 * 299.99531 * 1 2 3 28 28 H 1.08992 * 109.47414 * 119.99899 * 2 1 3 29 29 H 1.48508 * 109.99925 * 178.68344 * 3 2 1 30 30 H 1.48497 * 110.00106 * 299.99802 * 3 2 1 31 31 H 1.08005 * 119.97273 * 359.97438 * 5 4 2 32 32 H 1.07994 * 120.03140 * 180.02562 * 6 5 4 33 33 H 1.08994 * 109.47349 * 59.99994 * 9 8 7 34 34 H 1.08996 * 109.47042 * 299.99329 * 9 8 7 35 35 H 0.96996 * 119.99920 * 359.97438 * 12 10 9 36 36 H 1.08997 * 113.61646 * 334.57319 * 15 13 12 37 37 H 1.08998 * 113.69354 * 203.67627 * 15 13 12 38 38 H 1.08998 * 109.47573 * 295.00161 * 18 16 15 39 39 H 1.09003 * 109.47157 * 55.00680 * 18 16 15 40 40 H 0.97004 * 125.44782 * 179.97438 * 21 20 19 41 41 H 1.09002 * 113.61557 * 156.33711 * 24 13 12 42 42 H 1.09004 * 113.61501 * 25.43131 * 24 13 12 43 43 H 1.08001 * 120.02783 * 179.71902 * 25 7 6 44 44 H 1.08006 * 119.96969 * 180.32056 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7103 -1.2305 5 6 1.5967 -2.0341 -1.4481 6 6 2.0563 -2.6877 -2.5750 7 6 2.8548 -2.0148 -3.4886 8 8 3.3077 -2.6554 -4.5981 9 6 4.1255 -1.9006 -5.4946 10 6 4.5307 -2.7696 -6.6573 11 8 4.1565 -3.9219 -6.7125 12 7 5.3090 -2.2661 -7.6358 13 6 5.7034 -3.1110 -8.7658 14 1 5.0175 -3.9413 -8.9343 15 6 6.0362 -2.3183 -10.0408 16 6 7.4822 -2.2441 -9.5228 17 1 7.6751 -1.3786 -8.8890 18 6 8.5355 -2.4275 -10.6173 19 6 9.9086 -2.2168 -10.0333 20 7 10.6796 -3.1334 -9.5016 21 7 11.7692 -2.5615 -9.1185 22 7 11.7055 -1.3053 -9.3948 23 7 10.5735 -1.0632 -9.9639 24 6 7.1826 -3.5302 -8.7347 25 6 3.1942 -0.6885 -3.2647 26 6 2.7269 -0.0376 -2.1393 27 1 -0.3934 0.4417 0.7651 28 1 1.7923 -0.5138 0.8899 29 1 3.5345 1.7704 0.0321 30 1 1.5614 2.4679 -1.2085 31 1 0.9761 -2.5579 -0.7360 32 1 1.7944 -3.7216 -2.7448 33 1 5.0171 -1.5564 -4.9707 34 1 3.5648 -1.0408 -5.8613 35 1 5.6079 -1.3444 -7.5917 36 1 5.5412 -1.3487 -10.0939 37 1 5.9300 -2.8985 -10.9575 38 1 8.4647 -3.4361 -11.0245 39 1 8.3635 -1.7018 -11.4122 40 1 12.5173 -3.0061 -8.6900 41 1 7.3895 -4.4430 -9.2934 42 1 7.6130 -3.5390 -7.7333 43 1 3.8194 -0.1638 -3.9721 44 1 2.9867 0.9966 -1.9673 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_280130_17857870_17861474.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 05:11:27 Heat of formation + Delta-G solvation = 76.373225 kcal Electronic energy + Delta-G solvation = -28469.645697 eV Core-core repulsion = 24200.163182 eV Total energy + Delta-G solvation = -4269.482515 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 346.147 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -45.47830 -41.76783 -41.11462 -39.75093 -38.83681 -37.20412 -35.67549 -34.99797 -34.12627 -32.58865 -31.94224 -30.75046 -29.35099 -26.69128 -26.26182 -25.58515 -25.00355 -24.14902 -22.79945 -22.47048 -21.86277 -20.42597 -20.02339 -19.61237 -18.51135 -18.28375 -18.09259 -17.56504 -17.45013 -16.87181 -16.78446 -16.28882 -15.91737 -15.78799 -15.59964 -15.34038 -15.17902 -15.11327 -14.74412 -14.53503 -14.14704 -13.94637 -13.86538 -13.66162 -13.49371 -13.40692 -13.06928 -12.68260 -12.53914 -12.45058 -12.28369 -12.24157 -12.09610 -12.07899 -11.87672 -11.63902 -11.32978 -11.12379 -10.99953 -10.30355 -10.21066 -10.18784 -9.34640 -4.92921 0.09815 0.11870 0.15297 1.05763 1.31863 1.32844 1.36276 1.49054 1.64821 1.96685 2.47257 2.49446 2.87964 3.28595 3.34878 3.46371 3.50170 3.58335 3.61813 3.72030 3.83169 3.87003 3.87955 3.94560 3.97612 4.12146 4.28325 4.30218 4.40017 4.50708 4.53604 4.57149 4.62866 4.75308 4.79361 4.82385 4.85081 4.95987 5.01535 5.04691 5.06893 5.13288 5.19865 5.34955 5.52209 5.57506 5.60422 6.11988 6.35918 6.92455 7.02988 7.20441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.566 6.566 2 C -0.077 4.077 3 Si 0.774 3.226 4 C -0.129 4.129 5 C -0.055 4.055 6 C -0.159 4.159 7 C 0.121 3.879 8 O -0.314 6.314 9 C 0.035 3.965 10 C 0.517 3.483 11 O -0.568 6.568 12 N -0.693 5.693 13 C 0.109 3.891 14 H 0.086 0.914 15 C -0.118 4.118 16 C -0.096 4.096 17 H 0.092 0.908 18 C -0.015 4.015 19 C 0.172 3.828 20 N -0.308 5.308 21 N -0.212 5.212 22 N -0.069 5.069 23 N -0.304 5.304 24 C -0.144 4.144 25 C -0.202 4.202 26 C -0.099 4.099 27 H 0.403 0.597 28 H 0.093 0.907 29 H -0.286 1.286 30 H -0.296 1.296 31 H 0.147 0.853 32 H 0.138 0.862 33 H 0.121 0.879 34 H 0.124 0.876 35 H 0.419 0.581 36 H 0.092 0.908 37 H 0.117 0.883 38 H 0.111 0.889 39 H 0.116 0.884 40 H 0.489 0.511 41 H 0.101 0.899 42 H 0.052 0.948 43 H 0.159 0.841 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.810 4.224 1.646 4.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.375 6.375 2 C -0.187 4.187 3 Si 0.680 3.320 4 C -0.129 4.129 5 C -0.073 4.073 6 C -0.178 4.178 7 C 0.076 3.924 8 O -0.227 6.227 9 C -0.043 4.043 10 C 0.303 3.697 11 O -0.446 6.446 12 N -0.347 5.347 13 C 0.003 3.997 14 H 0.104 0.896 15 C -0.156 4.156 16 C -0.116 4.116 17 H 0.110 0.890 18 C -0.055 4.055 19 C -0.110 4.110 20 N -0.160 5.160 21 N -0.062 5.062 22 N -0.064 5.064 23 N -0.177 5.177 24 C -0.183 4.183 25 C -0.220 4.220 26 C -0.116 4.116 27 H 0.254 0.746 28 H 0.111 0.889 29 H -0.214 1.214 30 H -0.224 1.224 31 H 0.165 0.835 32 H 0.155 0.845 33 H 0.139 0.861 34 H 0.142 0.858 35 H 0.257 0.743 36 H 0.110 0.890 37 H 0.136 0.864 38 H 0.129 0.871 39 H 0.134 0.866 40 H 0.347 0.653 41 H 0.120 0.880 42 H 0.071 0.929 43 H 0.177 0.823 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 2.580 3.839 0.729 4.682 hybrid contribution 0.647 -0.702 0.001 0.955 sum 3.227 3.136 0.730 4.559 Atomic orbital electron populations 1.86443 1.17335 1.82421 1.51345 1.24802 0.85803 1.11040 0.97008 0.94325 0.77307 0.75424 0.84972 1.19691 1.00621 0.95110 0.97485 1.21007 0.96620 0.93608 0.96070 1.20738 1.00778 1.01630 0.94647 1.19161 0.94858 0.91564 0.86840 1.86130 1.65008 1.40031 1.31558 1.22742 0.97486 0.94450 0.89629 1.20425 0.78093 0.87493 0.83720 1.90761 1.55689 1.20024 1.78145 1.45386 1.51030 1.16407 1.21871 1.21944 0.96212 0.94763 0.86746 0.89580 1.23326 0.93711 1.01885 0.96704 1.22517 0.94188 0.98269 0.96610 0.88990 1.20211 0.81688 1.05870 0.97756 1.26261 1.00482 0.84667 0.99612 1.74739 0.96360 1.27170 1.17739 1.47915 1.14935 1.05004 1.38368 1.78941 1.15476 0.99569 1.12438 1.75890 0.99866 1.25403 1.16539 1.23534 0.95202 0.98929 1.00616 1.21389 1.05932 0.93891 1.00831 1.20864 0.97739 0.98959 0.94070 0.74593 0.88935 1.21352 1.22363 0.83537 0.84455 0.86122 0.85842 0.74321 0.88979 0.86432 0.87121 0.86616 0.65308 0.88026 0.92945 0.82314 0.85704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 -0.01 12.74 -148.98 -1.90 -1.91 16 2 C -0.08 0.03 2.81 71.24 0.20 0.23 16 3 Si 0.77 -1.94 29.78 68.60 2.04 0.10 16 4 C -0.13 -0.68 5.42 -19.85 -0.11 -0.79 16 5 C -0.06 -0.31 9.60 22.25 0.21 -0.10 16 6 C -0.16 -1.17 9.99 22.37 0.22 -0.95 16 7 C 0.12 0.85 6.69 22.51 0.15 1.00 16 8 O -0.31 -2.64 9.67 -73.30 -0.71 -3.35 16 9 C 0.03 -0.02 5.22 71.24 0.37 0.35 16 10 C 0.52 2.14 7.91 87.66 0.69 2.83 16 11 O -0.57 -8.76 16.10 16.01 0.26 -8.50 16 12 N -0.69 2.25 5.26 -440.02 -2.32 -0.07 16 13 C 0.11 -0.29 4.32 45.52 0.20 -0.09 16 14 H 0.09 0.20 7.47 -2.38 -0.02 0.19 16 15 C -0.12 1.04 7.39 31.12 0.23 1.27 16 16 C -0.10 0.65 3.51 -10.27 -0.04 0.62 16 17 H 0.09 -0.55 8.12 -2.39 -0.02 -0.57 16 18 C -0.02 0.09 5.68 29.85 0.17 0.26 16 19 C 0.17 0.16 7.61 138.55 1.05 1.22 16 20 N -0.31 -0.30 12.36 -51.20 -0.63 -0.93 16 21 N -0.21 0.35 7.91 37.00 0.29 0.64 16 22 N -0.07 -0.27 13.48 37.02 0.50 0.23 16 23 N -0.30 -1.58 12.50 -51.26 -0.64 -2.22 16 24 C -0.14 0.46 7.43 31.12 0.23 0.69 16 25 C -0.20 -0.67 9.04 22.37 0.20 -0.47 16 26 C -0.10 -0.49 8.66 22.25 0.19 -0.29 16 27 H 0.40 -4.27 8.74 -74.05 -0.65 -4.92 16 28 H 0.09 -0.40 7.96 -2.39 -0.02 -0.41 16 29 H -0.29 -0.67 7.11 99.48 0.71 0.03 16 30 H -0.30 -1.42 7.11 99.48 0.71 -0.72 16 31 H 0.15 0.37 8.06 -2.91 -0.02 0.35 16 32 H 0.14 0.85 8.06 -2.91 -0.02 0.83 16 33 H 0.12 -0.76 7.65 -2.39 -0.02 -0.78 16 34 H 0.12 -0.81 7.67 -2.39 -0.02 -0.83 16 35 H 0.42 -4.19 8.70 -92.71 -0.81 -4.99 16 36 H 0.09 -0.96 8.14 -2.39 -0.02 -0.98 16 37 H 0.12 -1.29 8.10 -2.39 -0.02 -1.31 16 38 H 0.11 -0.90 7.84 -2.39 -0.02 -0.92 16 39 H 0.12 -0.96 8.14 -2.39 -0.02 -0.98 16 40 H 0.49 -4.90 8.96 -347.66 -3.12 -8.02 16 41 H 0.10 -0.39 7.90 -2.39 -0.02 -0.41 16 42 H 0.05 0.04 8.14 -2.39 -0.02 0.02 16 43 H 0.16 -0.58 6.30 -2.91 -0.02 -0.60 16 44 H 0.13 0.39 4.87 -2.91 -0.01 0.37 16 Total: 0.00 -32.33 376.15 -2.56 -34.89 By element: Atomic # 1 Polarization: -21.22 SS G_CDS: -3.44 Total: -24.66 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: 3.99 Total: 5.78 kcal Atomic # 7 Polarization: 0.44 SS G_CDS: -2.80 Total: -2.35 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: -2.35 Total: -13.75 kcal Atomic # 14 Polarization: -1.94 SS G_CDS: 2.04 Total: 0.10 kcal Total: -32.33 -2.56 -34.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_280130_17857870_17861474.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.261 kcal (2) G-P(sol) polarization free energy of solvation -32.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds