Wall clock time and date at job start Sat Mar 6 2021 05:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86297 * 109.47463 * 2 1 4 4 C 1.50703 * 109.47106 * 120.00050 * 2 1 3 5 5 C 1.34236 * 126.50163 * 255.02700 * 4 2 1 6 6 N 1.36837 * 109.93711 * 180.22767 * 5 4 2 7 7 C 1.46495 * 125.05900 * 179.73407 * 6 5 4 8 8 C 1.50702 * 109.47212 * 265.02592 * 7 6 5 9 9 O 1.21275 * 120.00072 * 359.97438 * 8 7 6 10 10 N 1.34781 * 120.00140 * 180.02562 * 8 7 6 11 11 C 1.46501 * 120.00097 * 180.02562 * 10 8 7 12 12 H 1.08997 * 112.84298 * 334.66351 * 11 10 8 13 13 C 1.53780 * 113.61582 * 105.85716 * 11 10 8 14 14 C 1.54060 * 86.98022 * 89.16226 * 13 11 10 15 15 H 1.09005 * 113.61246 * 270.87822 * 14 13 11 16 16 C 1.53000 * 113.61695 * 139.97983 * 14 13 11 17 17 C 1.50698 * 109.47260 * 87.50279 * 16 14 13 18 18 N 1.31050 * 126.54961 * 269.71405 * 17 16 14 19 19 N 1.28879 * 107.91385 * 179.83549 * 18 17 16 20 20 N 1.28781 * 109.10560 * 0.43575 * 19 18 17 21 21 N 1.29000 * 108.72432 * 359.72893 * 20 19 18 22 22 C 1.53774 * 87.07963 * 25.43167 * 14 13 11 23 23 C 1.37689 * 109.87393 * 359.55777 * 6 5 4 24 24 C 1.39087 * 133.51283 * 180.12070 * 23 6 5 25 25 C 1.37788 * 119.77805 * 180.33975 * 24 23 6 26 26 C 1.38784 * 120.66915 * 359.97438 * 25 24 23 27 27 C 1.36668 * 120.52618 * 0.02562 * 26 25 24 28 28 C 1.39587 * 119.76267 * 359.95587 * 27 26 25 29 29 H 0.96696 * 113.99832 * 60.00336 * 1 2 3 30 30 H 1.09005 * 109.47076 * 239.99874 * 2 1 3 31 31 H 1.48503 * 109.99859 * 298.68157 * 3 2 1 32 32 H 1.48509 * 109.99834 * 59.99806 * 3 2 1 33 33 H 1.08002 * 125.02686 * 359.95835 * 5 4 2 34 34 H 1.09004 * 109.47481 * 25.02432 * 7 6 5 35 35 H 1.08993 * 109.46981 * 145.02699 * 7 6 5 36 36 H 0.96999 * 119.99390 * 359.97438 * 10 8 7 37 37 H 1.08996 * 113.61391 * 203.66387 * 13 11 10 38 38 H 1.08998 * 113.61486 * 334.57561 * 13 11 10 39 39 H 1.09000 * 109.47111 * 207.50259 * 16 14 13 40 40 H 1.08996 * 109.47064 * 327.50216 * 16 14 13 41 41 H 0.97007 * 125.44627 * 180.14201 * 19 18 17 42 42 H 1.08996 * 113.61512 * 220.02526 * 22 14 13 43 43 H 1.08992 * 113.69484 * 89.12736 * 22 14 13 44 44 H 1.08000 * 120.10857 * 0.31303 * 24 23 6 45 45 H 1.08004 * 119.66588 * 179.97438 * 25 24 23 46 46 H 1.08000 * 119.73887 * 180.02562 * 26 25 24 47 47 H 1.07999 * 120.11551 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 2.4603 -0.1376 2.3232 6 7 2.8071 -1.0994 3.2327 7 6 3.4179 -0.8412 4.5389 8 6 4.9158 -0.9621 4.4258 9 8 5.4232 -1.2373 3.3592 10 7 5.6916 -0.7653 5.5102 11 6 7.1478 -0.8822 5.4001 12 1 7.4596 -1.5293 4.5803 13 6 7.8784 0.4706 5.4292 14 6 7.9286 0.3183 6.9614 15 1 7.0587 0.7337 7.4702 16 6 9.2527 0.7719 7.5795 17 6 9.1901 2.2486 7.8736 18 7 9.5399 3.2205 7.0671 19 7 9.3364 4.3362 7.6793 20 7 8.8749 4.0929 8.8567 21 7 8.7737 2.8156 9.0060 22 6 7.8429 -1.2002 6.7346 23 6 2.4929 -2.3457 2.7388 24 6 2.6275 -3.6362 3.2398 25 6 2.2139 -4.7107 2.4829 26 6 1.6629 -4.5193 1.2236 27 6 1.5214 -3.2600 0.7119 28 6 1.9333 -2.1570 1.4617 29 1 -0.3933 0.4416 -0.7650 30 1 1.7923 -0.5139 -0.8900 31 1 1.5880 2.4585 -1.2243 32 1 1.5615 2.4679 1.2086 33 1 2.5964 0.9247 2.4619 34 1 3.1585 0.1648 4.8689 35 1 3.0485 -1.5676 5.2627 36 1 5.2858 -0.5455 6.3634 37 1 8.8599 0.4470 4.9557 38 1 7.2645 1.3057 5.0920 39 1 9.4280 0.2241 8.5054 40 1 10.0660 0.5747 6.8811 41 1 9.5077 5.2181 7.3133 42 1 7.2003 -1.7130 7.4502 43 1 8.8140 -1.6810 6.6173 44 1 3.0551 -3.7955 4.2187 45 1 2.3197 -5.7121 2.8736 46 1 1.3434 -5.3724 0.6434 47 1 1.0913 -3.1187 -0.2687 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_280130_17857870_17875166.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 05:11:33 Heat of formation + Delta-G solvation = 154.892411 kcal Electronic energy + Delta-G solvation = -32233.749321 eV Core-core repulsion = 27808.938034 eV Total energy + Delta-G solvation = -4424.811287 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 369.159 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -45.44817 -42.54085 -41.19357 -39.50203 -38.08738 -37.69495 -35.62144 -34.94328 -34.32253 -33.84884 -31.49929 -30.43301 -30.26716 -28.86336 -26.63886 -25.92867 -25.53813 -24.77540 -23.75811 -22.89903 -22.58867 -21.76627 -20.56109 -20.33534 -19.96323 -18.61201 -18.42105 -18.13918 -18.03455 -17.70642 -16.91373 -16.45772 -16.33504 -16.25133 -15.81469 -15.71486 -15.29717 -15.12196 -14.98903 -14.89574 -14.74236 -14.68040 -14.38486 -14.13597 -13.80331 -13.53002 -13.47583 -13.24891 -13.00103 -12.74522 -12.62142 -12.55542 -12.49771 -12.41621 -12.24782 -12.09936 -12.04527 -11.73017 -11.59206 -11.27996 -11.13439 -10.95803 -10.54647 -10.36078 -10.08268 -9.16250 -8.63943 -4.90240 0.14016 0.14857 0.64370 1.09001 1.31076 1.41506 1.46098 1.52012 1.57740 1.61869 1.91202 2.21257 2.91130 2.94889 3.31834 3.51213 3.55171 3.58548 3.66264 3.71547 3.76318 3.81459 3.91062 3.94352 4.01249 4.11713 4.23338 4.27553 4.32337 4.39940 4.55319 4.56910 4.57346 4.68304 4.70221 4.78688 4.79074 4.87924 4.89412 4.91926 4.99608 5.10081 5.14075 5.18743 5.26699 5.51439 5.63234 5.63587 5.66192 5.73055 5.75117 6.16609 6.23909 6.48267 6.66874 7.15348 7.23542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.560 6.560 2 C -0.052 4.052 3 Si 0.759 3.241 4 C -0.180 4.180 5 C 0.071 3.929 6 N -0.466 5.466 7 C 0.087 3.913 8 C 0.496 3.504 9 O -0.564 6.564 10 N -0.696 5.696 11 C 0.113 3.887 12 H 0.082 0.918 13 C -0.143 4.143 14 C -0.095 4.095 15 H 0.092 0.908 16 C -0.016 4.016 17 C 0.174 3.826 18 N -0.307 5.307 19 N -0.212 5.212 20 N -0.070 5.070 21 N -0.305 5.305 22 C -0.120 4.120 23 C 0.091 3.909 24 C -0.134 4.134 25 C -0.106 4.106 26 C -0.153 4.153 27 C -0.087 4.087 28 C -0.118 4.118 29 H 0.390 0.610 30 H 0.074 0.926 31 H -0.282 1.282 32 H -0.280 1.280 33 H 0.190 0.810 34 H 0.155 0.845 35 H 0.144 0.856 36 H 0.418 0.582 37 H 0.097 0.903 38 H 0.054 0.946 39 H 0.114 0.886 40 H 0.109 0.891 41 H 0.489 0.511 42 H 0.091 0.909 43 H 0.113 0.887 44 H 0.135 0.865 45 H 0.148 0.852 46 H 0.139 0.861 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.599 1.366 3.545 5.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.369 6.369 2 C -0.160 4.160 3 Si 0.662 3.338 4 C -0.187 4.187 5 C -0.055 4.055 6 N -0.149 5.149 7 C -0.038 4.038 8 C 0.281 3.719 9 O -0.442 6.442 10 N -0.349 5.349 11 C 0.007 3.993 12 H 0.100 0.900 13 C -0.181 4.181 14 C -0.115 4.115 15 H 0.111 0.889 16 C -0.056 4.056 17 C -0.109 4.109 18 N -0.160 5.160 19 N -0.062 5.062 20 N -0.065 5.065 21 N -0.178 5.178 22 C -0.158 4.158 23 C -0.014 4.014 24 C -0.154 4.154 25 C -0.125 4.125 26 C -0.171 4.171 27 C -0.106 4.106 28 C -0.122 4.122 29 H 0.239 0.761 30 H 0.092 0.908 31 H -0.208 1.208 32 H -0.206 1.206 33 H 0.207 0.793 34 H 0.173 0.827 35 H 0.162 0.838 36 H 0.255 0.745 37 H 0.116 0.884 38 H 0.073 0.927 39 H 0.132 0.868 40 H 0.127 0.873 41 H 0.347 0.653 42 H 0.109 0.891 43 H 0.132 0.868 44 H 0.153 0.847 45 H 0.166 0.834 46 H 0.157 0.843 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 3.870 2.269 4.022 6.026 hybrid contribution -1.111 0.383 -0.872 1.463 sum 2.759 2.652 3.150 4.957 Atomic orbital electron populations 1.86591 1.19108 1.80678 1.50537 1.24335 0.83408 1.11470 0.96791 0.94123 0.90528 0.71522 0.77643 1.19758 1.09961 0.91557 0.97398 1.21890 1.00032 0.94930 0.88629 1.43387 1.51858 1.03908 1.15724 1.21958 0.89125 1.08637 0.84081 1.21295 0.90183 0.76320 0.84107 1.90795 1.75799 1.48184 1.29406 1.45527 1.06279 1.70935 1.12174 1.21856 0.79452 0.98018 0.99988 0.89984 1.23548 1.01392 0.96967 0.96216 1.22558 0.96858 0.97052 0.95052 0.88935 1.20213 0.99643 0.81498 1.04261 1.26244 0.98145 0.99907 0.86605 1.74741 1.22722 0.92614 1.25904 1.47914 1.39198 1.10718 1.08368 1.78949 1.13337 1.11200 1.02982 1.75889 1.20100 0.98243 1.23549 1.23307 1.02427 0.94999 0.95090 1.18427 1.01607 0.87006 0.94388 1.20265 1.04701 0.88915 1.01517 1.21154 0.97988 0.99020 0.94312 1.20936 1.02248 0.96980 0.96986 1.20451 0.99011 0.91587 0.99502 1.19353 1.04240 0.93670 0.94969 0.76070 0.90765 1.20808 1.20613 0.79293 0.82738 0.83812 0.74457 0.88420 0.92713 0.86799 0.87257 0.65314 0.89063 0.86848 0.84747 0.83447 0.84305 0.86075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -3.91 12.86 -148.98 -1.92 -5.82 16 2 C -0.05 -0.26 3.05 71.24 0.22 -0.04 16 3 Si 0.76 0.51 30.79 68.60 2.11 2.62 16 4 C -0.18 -1.60 5.61 -18.62 -0.10 -1.71 16 5 C 0.07 0.36 9.89 83.00 0.82 1.19 16 6 N -0.47 -2.02 2.27 -520.00 -1.18 -3.19 16 7 C 0.09 -0.43 6.48 85.63 0.56 0.13 16 8 C 0.50 -0.18 7.90 87.66 0.69 0.51 16 9 O -0.56 -5.97 16.04 -3.02 -0.05 -6.02 16 10 N -0.70 4.52 5.26 -440.03 -2.32 2.20 16 11 C 0.11 -0.55 4.30 45.52 0.20 -0.35 16 12 H 0.08 0.05 7.50 -2.39 -0.02 0.03 16 13 C -0.14 0.72 7.45 31.22 0.23 0.95 16 14 C -0.10 0.78 3.53 -10.17 -0.04 0.75 16 15 H 0.09 -0.69 8.12 -2.38 -0.02 -0.71 16 16 C -0.02 0.11 5.68 29.85 0.17 0.28 16 17 C 0.17 0.00 7.61 138.55 1.05 1.05 16 18 N -0.31 0.01 12.36 -51.20 -0.63 -0.62 16 19 N -0.21 0.55 7.91 37.00 0.29 0.84 16 20 N -0.07 -0.21 13.48 37.02 0.50 0.29 16 21 N -0.31 -1.33 12.50 -51.26 -0.64 -1.97 16 22 C -0.12 1.22 7.38 31.12 0.23 1.45 16 23 C 0.09 0.82 6.81 39.03 0.27 1.08 16 24 C -0.13 -0.81 10.00 22.37 0.22 -0.58 16 25 C -0.11 -0.55 10.01 22.29 0.22 -0.32 16 26 C -0.15 -1.03 9.97 22.03 0.22 -0.81 16 27 C -0.09 -0.88 10.05 22.23 0.22 -0.65 16 28 C -0.12 -1.39 6.35 -20.20 -0.13 -1.52 16 29 H 0.39 -0.64 8.74 -74.06 -0.65 -1.29 16 30 H 0.07 0.26 7.96 -2.38 -0.02 0.24 16 31 H -0.28 -1.18 7.11 99.48 0.71 -0.47 16 32 H -0.28 -1.29 7.04 99.48 0.70 -0.59 16 33 H 0.19 -0.15 6.30 -2.91 -0.02 -0.17 16 34 H 0.16 -1.83 8.12 -2.38 -0.02 -1.85 16 35 H 0.14 -1.45 8.14 -2.39 -0.02 -1.47 16 36 H 0.42 -5.35 8.70 -92.71 -0.81 -6.16 16 37 H 0.10 -0.50 7.90 -2.39 -0.02 -0.52 16 38 H 0.05 -0.09 8.14 -2.39 -0.02 -0.11 16 39 H 0.11 -1.01 8.14 -2.39 -0.02 -1.03 16 40 H 0.11 -0.97 7.85 -2.39 -0.02 -0.99 16 41 H 0.49 -5.35 8.96 -347.66 -3.12 -8.46 16 42 H 0.09 -1.08 8.14 -2.39 -0.02 -1.09 16 43 H 0.11 -1.34 8.10 -2.39 -0.02 -1.36 16 44 H 0.13 0.12 8.06 -2.91 -0.02 0.10 16 45 H 0.15 -0.06 8.06 -2.91 -0.02 -0.08 16 46 H 0.14 0.30 8.06 -2.91 -0.02 0.28 16 47 H 0.12 0.99 8.06 -2.91 -0.02 0.96 16 Total: 0.00 -32.78 402.75 -2.26 -35.04 By element: Atomic # 1 Polarization: -21.26 SS G_CDS: -3.49 Total: -24.75 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: 5.05 Total: 1.39 kcal Atomic # 7 Polarization: 1.52 SS G_CDS: -3.98 Total: -2.45 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: -1.96 Total: -11.84 kcal Atomic # 14 Polarization: 0.51 SS G_CDS: 2.11 Total: 2.62 kcal Total: -32.78 -2.26 -35.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_280130_17857870_17875166.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.928 kcal (2) G-P(sol) polarization free energy of solvation -32.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 157.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 154.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds