Wall clock time and date at job start Sat Mar 6 2021 05:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86300 * 109.47146 * 2 1 4 4 C 1.50695 * 109.46955 * 239.99761 * 2 1 3 5 5 C 1.34493 * 125.49428 * 150.02952 * 4 2 1 6 6 C 1.46749 * 106.37034 * 179.97438 * 5 4 2 7 7 C 1.47259 * 126.97320 * 180.02562 * 6 5 4 8 8 O 1.21626 * 120.00309 * 179.97438 * 7 6 5 9 9 N 1.34777 * 119.99668 * 359.97250 * 7 6 5 10 10 C 1.46509 * 119.99600 * 180.02562 * 9 7 6 11 11 H 1.08992 * 112.84844 * 336.19714 * 10 9 7 12 12 C 1.53784 * 113.61247 * 107.50415 * 10 9 7 13 13 C 1.53779 * 87.08002 * 89.11427 * 12 10 9 14 14 H 1.09007 * 113.69167 * 270.87186 * 13 12 10 15 15 C 1.52999 * 113.61761 * 139.98121 * 13 12 10 16 16 C 1.50698 * 109.47190 * 87.49837 * 15 13 12 17 17 N 1.31046 * 126.54510 * 90.00489 * 16 15 13 18 18 N 1.28886 * 107.91474 * 179.97438 * 17 16 15 19 19 N 1.28782 * 109.10005 * 0.02562 * 18 17 16 20 20 N 1.29000 * 108.72892 * 359.72234 * 19 18 17 21 21 C 1.53774 * 87.08298 * 25.43061 * 13 12 10 22 22 C 1.36336 * 106.05928 * 359.97438 * 6 5 4 23 23 C 1.50999 * 126.79250 * 180.02562 * 22 6 5 24 24 C 1.53398 * 108.25340 * 164.33997 * 23 22 6 25 25 C 1.53159 * 109.04505 * 48.46038 * 24 23 22 26 26 C 1.53136 * 109.52253 * 290.42233 * 25 24 23 27 27 N 1.35212 * 108.65973 * 359.78731 * 22 6 5 28 28 H 0.96706 * 114.00468 * 300.00074 * 1 2 3 29 29 H 1.09001 * 109.46621 * 119.99651 * 2 1 3 30 30 H 1.48498 * 109.99634 * 178.68087 * 3 2 1 31 31 H 1.48502 * 109.99691 * 299.99831 * 3 2 1 32 32 H 1.08004 * 126.81415 * 359.94105 * 5 4 2 33 33 H 0.96994 * 120.00366 * 0.02562 * 9 7 6 34 34 H 1.09000 * 113.61318 * 203.65964 * 12 10 9 35 35 H 1.08996 * 113.61675 * 334.56944 * 12 10 9 36 36 H 1.08999 * 109.47462 * 207.50521 * 15 13 12 37 37 H 1.09000 * 109.46739 * 327.50311 * 15 13 12 38 38 H 0.96992 * 125.45034 * 179.97438 * 18 17 16 39 39 H 1.08997 * 113.61912 * 220.01518 * 21 13 12 40 40 H 1.09005 * 113.69320 * 89.12487 * 21 13 12 41 41 H 1.09003 * 109.70743 * 284.03173 * 23 22 6 42 42 H 1.08993 * 109.70671 * 44.65230 * 23 22 6 43 43 H 1.09000 * 109.53980 * 168.32863 * 24 23 22 44 44 H 1.09000 * 109.54200 * 288.50423 * 24 23 22 45 45 H 1.08996 * 109.46470 * 50.44230 * 25 24 23 46 46 H 1.08994 * 109.46158 * 170.41213 * 25 24 23 47 47 H 1.09003 * 109.56235 * 170.83148 * 26 25 24 48 48 H 1.08995 * 109.56497 * 291.06337 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2304 5 6 3.0859 -0.4468 -1.8677 6 6 3.1556 -1.3783 -2.9995 7 6 4.2342 -1.4810 -3.9968 8 8 4.1618 -2.3053 -4.8882 9 7 5.3017 -0.6616 -3.9217 10 6 6.3745 -0.7635 -4.9143 11 1 6.4234 -1.7452 -5.3853 12 6 6.4009 0.4040 -5.9148 13 6 7.3186 1.1332 -4.9193 14 1 6.7798 1.7281 -4.1818 15 6 8.4576 1.9054 -5.5881 16 6 7.9841 3.2912 -5.9435 17 7 8.0549 4.3583 -5.1861 18 7 7.5481 5.3448 -5.8425 19 7 7.1581 4.9270 -6.9966 20 7 7.4183 3.6671 -7.0906 21 6 7.7341 -0.2555 -4.4060 22 6 2.0198 -2.1300 -2.9398 23 6 1.6165 -3.2358 -3.8857 24 6 0.4945 -4.0473 -3.2255 25 6 -0.5703 -3.0849 -2.6910 26 6 -0.0061 -2.3094 -1.4970 27 7 1.2911 -1.7289 -1.8739 28 1 -0.3934 0.4417 0.7651 29 1 1.7922 -0.5138 0.8900 30 1 3.5346 1.7702 0.0321 31 1 1.5615 2.4678 -1.2085 32 1 3.8165 0.3023 -1.6000 33 1 5.3597 -0.0045 -3.2107 34 1 6.8879 0.1591 -6.8588 35 1 5.4325 0.8858 -6.0494 36 1 9.3017 1.9747 -4.9019 37 1 8.7674 1.3839 -6.4937 38 1 7.4718 6.2560 -5.5189 39 1 7.8420 -0.3064 -3.3226 40 1 8.5855 -0.6819 -4.9366 41 1 1.2582 -2.8067 -4.8214 42 1 2.4718 -3.8826 -4.0810 43 1 0.0461 -4.7149 -3.9612 44 1 0.9040 -4.6335 -2.4029 45 1 -0.8549 -2.3852 -3.4768 46 1 -1.4461 -3.6515 -2.3748 47 1 -0.6977 -1.5142 -1.2186 48 1 0.1304 -2.9863 -0.6538 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_280130_17857870_17964112.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 05:13:25 Heat of formation + Delta-G solvation = 119.331487 kcal Electronic energy + Delta-G solvation = -32145.871250 eV Core-core repulsion = 27820.432587 eV Total energy + Delta-G solvation = -4325.438662 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 359.174 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -45.50082 -42.88908 -41.12685 -39.32258 -37.88390 -36.94640 -35.64534 -34.95384 -34.04497 -33.54155 -31.34300 -30.56823 -29.38270 -26.71073 -26.70184 -25.61439 -25.21731 -24.64080 -23.89963 -22.69756 -21.75441 -21.42026 -20.29485 -20.17593 -19.47381 -18.60152 -18.17988 -18.09210 -17.10843 -16.91108 -16.59290 -16.16517 -16.00082 -15.94460 -15.71938 -15.53433 -15.33765 -15.16469 -15.10231 -14.72733 -14.60547 -14.56081 -14.14532 -13.88761 -13.61248 -13.38252 -13.34793 -13.30955 -12.92129 -12.62281 -12.59074 -12.47411 -12.27308 -12.17831 -12.10233 -12.02444 -11.89905 -11.74169 -11.65097 -11.34250 -11.04926 -10.99225 -10.58266 -10.14271 -9.71005 -9.16101 -4.99703 0.09067 0.58130 0.92106 1.03510 1.34667 1.47163 1.65571 1.74833 2.04149 2.28237 2.37936 2.85758 3.13119 3.27974 3.48333 3.50140 3.53969 3.59045 3.67676 3.74836 3.78493 3.84736 3.88064 4.01448 4.21291 4.25319 4.27313 4.34276 4.42794 4.48811 4.50101 4.53011 4.60475 4.66608 4.72689 4.73906 4.78727 4.82442 4.86196 4.91390 4.92845 4.94688 5.04252 5.07881 5.13771 5.16033 5.23524 5.53248 5.59248 5.63023 5.92289 6.11222 6.51618 6.82482 7.18200 7.22157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.563 6.563 2 C -0.050 4.050 3 Si 0.805 3.195 4 C 0.027 3.973 5 C -0.193 4.193 6 C -0.260 4.260 7 C 0.591 3.409 8 O -0.582 6.582 9 N -0.702 5.702 10 C 0.110 3.890 11 H 0.089 0.911 12 C -0.145 4.145 13 C -0.096 4.096 14 H 0.084 0.916 15 C -0.014 4.014 16 C 0.173 3.827 17 N -0.308 5.308 18 N -0.211 5.211 19 N -0.071 5.071 20 N -0.304 5.304 21 C -0.117 4.117 22 C 0.105 3.895 23 C -0.053 4.053 24 C -0.123 4.123 25 C -0.135 4.135 26 C 0.098 3.902 27 N -0.423 5.423 28 H 0.409 0.591 29 H 0.103 0.897 30 H -0.280 1.280 31 H -0.314 1.314 32 H 0.154 0.846 33 H 0.407 0.593 34 H 0.104 0.896 35 H 0.043 0.957 36 H 0.119 0.881 37 H 0.112 0.888 38 H 0.490 0.510 39 H 0.087 0.913 40 H 0.122 0.878 41 H 0.078 0.922 42 H 0.084 0.916 43 H 0.092 0.908 44 H 0.071 0.929 45 H 0.064 0.936 46 H 0.113 0.887 47 H 0.117 0.883 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.311 2.346 9.821 10.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.374 6.374 2 C -0.159 4.159 3 Si 0.709 3.291 4 C -0.083 4.083 5 C -0.217 4.217 6 C -0.269 4.269 7 C 0.381 3.619 8 O -0.464 6.464 9 N -0.352 5.352 10 C 0.005 3.995 11 H 0.107 0.893 12 C -0.184 4.184 13 C -0.115 4.115 14 H 0.102 0.898 15 C -0.054 4.054 16 C -0.110 4.110 17 N -0.160 5.160 18 N -0.061 5.061 19 N -0.066 5.066 20 N -0.177 5.177 21 C -0.155 4.155 22 C -0.014 4.014 23 C -0.091 4.091 24 C -0.161 4.161 25 C -0.172 4.172 26 C -0.021 4.021 27 N -0.098 5.098 28 H 0.262 0.738 29 H 0.120 0.880 30 H -0.206 1.206 31 H -0.243 1.243 32 H 0.172 0.828 33 H 0.242 0.758 34 H 0.122 0.878 35 H 0.062 0.938 36 H 0.137 0.863 37 H 0.130 0.870 38 H 0.348 0.652 39 H 0.105 0.895 40 H 0.140 0.860 41 H 0.097 0.903 42 H 0.102 0.898 43 H 0.111 0.889 44 H 0.089 0.911 45 H 0.083 0.917 46 H 0.132 0.868 47 H 0.135 0.865 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.390 2.345 8.006 8.458 hybrid contribution 0.202 0.362 0.128 0.434 sum -1.188 2.707 8.134 8.655 Atomic orbital electron populations 1.86316 1.16724 1.82390 1.51986 1.24567 0.86158 1.10506 0.94677 0.94600 0.77741 0.72524 0.84197 1.20289 0.94840 0.93976 0.99188 1.21780 0.99341 1.03220 0.97337 1.19977 0.98654 1.06062 1.02227 1.17506 0.81394 0.79826 0.83193 1.90726 1.79815 1.38524 1.37320 1.45388 1.20290 1.38086 1.31431 1.21934 0.87791 0.99494 0.90327 0.89251 1.23532 0.99594 0.96586 0.98653 1.22472 0.95866 0.95434 0.97773 0.89796 1.20209 0.98544 0.83116 1.03501 1.26248 0.99188 0.98363 0.87217 1.74704 1.19779 0.96511 1.25031 1.47891 1.36077 1.13549 1.08562 1.78948 1.16261 1.06704 1.04679 1.75904 1.16490 1.02483 1.22778 1.23319 0.95918 0.93476 1.02783 1.20672 0.91575 0.98270 0.90909 1.20471 0.99840 0.93298 0.95513 1.21710 0.95155 0.97817 1.01375 1.21942 0.99616 0.98634 0.97011 1.22497 0.81508 0.99404 0.98698 1.44134 1.18020 1.26660 1.20978 0.73763 0.87975 1.20641 1.24258 0.82837 0.75766 0.87755 0.93830 0.86315 0.86952 0.65226 0.89458 0.85969 0.90322 0.89763 0.88900 0.91058 0.91712 0.86827 0.86492 0.88968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 2.89 9.97 -148.98 -1.48 1.40 16 2 C -0.05 0.15 2.99 71.23 0.21 0.36 16 3 Si 0.80 -3.10 31.23 68.60 2.14 -0.95 16 4 C 0.03 0.15 6.18 40.99 0.25 0.40 16 5 C -0.19 -1.44 9.09 23.64 0.21 -1.22 16 6 C -0.26 -3.02 6.28 -19.12 -0.12 -3.14 16 7 C 0.59 7.74 7.81 86.61 0.68 8.42 16 8 O -0.58 -11.11 14.93 -4.11 -0.06 -11.17 16 9 N -0.70 -4.40 5.26 -443.45 -2.33 -6.73 16 10 C 0.11 0.38 4.33 45.52 0.20 0.58 16 11 H 0.09 0.64 7.46 -2.39 -0.02 0.62 16 12 C -0.14 -0.42 7.43 31.12 0.23 -0.19 16 13 C -0.10 0.17 3.51 -10.27 -0.04 0.14 16 14 H 0.08 -0.02 8.12 -2.38 -0.02 -0.04 16 15 C -0.01 0.04 5.68 29.85 0.17 0.21 16 16 C 0.17 0.68 7.61 138.55 1.05 1.73 16 17 N -0.31 -0.89 12.36 -51.20 -0.63 -1.53 16 18 N -0.21 -0.07 7.91 37.00 0.29 0.22 16 19 N -0.07 -0.47 13.48 37.02 0.50 0.03 16 20 N -0.30 -2.64 12.50 -51.26 -0.64 -3.28 16 21 C -0.12 0.47 7.39 31.12 0.23 0.70 16 22 C 0.10 1.05 6.57 41.69 0.27 1.32 16 23 C -0.05 -0.39 5.32 30.08 0.16 -0.23 16 24 C -0.12 -0.06 5.98 30.78 0.18 0.13 16 25 C -0.13 0.23 5.92 30.69 0.18 0.41 16 26 C 0.10 0.00 6.21 86.32 0.54 0.54 16 27 N -0.42 -2.63 3.11 -493.59 -1.54 -4.17 16 28 H 0.41 -6.43 8.74 -74.05 -0.65 -7.08 16 29 H 0.10 -0.74 7.96 -2.39 -0.02 -0.76 16 30 H -0.28 -0.06 6.88 99.48 0.68 0.62 16 31 H -0.31 -2.04 7.11 99.48 0.71 -1.33 16 32 H 0.15 0.57 6.37 -2.91 -0.02 0.56 16 33 H 0.41 0.94 7.83 -92.71 -0.73 0.21 16 34 H 0.10 0.14 7.90 -2.39 -0.02 0.13 16 35 H 0.04 0.37 8.14 -2.39 -0.02 0.35 16 36 H 0.12 -0.78 8.14 -2.39 -0.02 -0.80 16 37 H 0.11 -0.51 7.84 -2.39 -0.02 -0.53 16 38 H 0.49 -4.22 8.96 -347.68 -3.12 -7.34 16 39 H 0.09 -0.46 8.14 -2.39 -0.02 -0.48 16 40 H 0.12 -0.93 8.10 -2.38 -0.02 -0.95 16 41 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.08 0.87 7.40 -2.39 -0.02 0.85 16 43 H 0.09 -0.19 8.14 -2.39 -0.02 -0.21 16 44 H 0.07 0.02 8.12 -2.39 -0.02 0.00 16 45 H 0.06 0.04 8.11 -2.39 -0.02 0.02 16 46 H 0.11 -0.73 8.14 -2.39 -0.02 -0.75 16 47 H 0.12 -0.08 5.94 -2.39 -0.01 -0.09 16 48 H 0.09 -0.22 8.14 -2.39 -0.02 -0.24 16 Total: 0.00 -29.85 388.89 -2.77 -32.62 By element: Atomic # 1 Polarization: -13.14 SS G_CDS: -3.44 Total: -16.57 kcal Atomic # 6 Polarization: 5.72 SS G_CDS: 4.42 Total: 10.14 kcal Atomic # 7 Polarization: -11.11 SS G_CDS: -4.35 Total: -15.46 kcal Atomic # 8 Polarization: -8.22 SS G_CDS: -1.55 Total: -9.77 kcal Atomic # 14 Polarization: -3.10 SS G_CDS: 2.14 Total: -0.95 kcal Total: -29.85 -2.77 -32.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_280130_17857870_17964112.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.953 kcal (2) G-P(sol) polarization free energy of solvation -29.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds