Wall clock time and date at job start Sat Mar 6 2021 05:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46897 * 111.00125 * 2 1 4 4 C 1.39051 * 110.99533 * 123.94931 * 2 1 3 5 5 C 1.39205 * 119.92841 * 120.00292 * 4 2 1 6 6 C 1.50698 * 119.96708 * 359.72111 * 5 4 2 7 7 O 1.42906 * 109.47176 * 285.00457 * 6 5 4 8 8 Si 1.86296 * 109.47185 * 165.00321 * 6 5 4 9 9 C 1.37623 * 120.06857 * 180.02562 * 5 4 2 10 10 C 1.39775 * 119.93132 * 0.02562 * 9 5 4 11 11 C 1.47522 * 120.06991 * 179.97438 * 10 9 5 12 12 O 1.21591 * 120.00088 * 0.05137 * 11 10 9 13 13 N 1.34782 * 119.99813 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99719 * 180.02562 * 13 11 10 15 15 H 1.09002 * 112.85183 * 23.80894 * 14 13 11 16 16 C 1.53786 * 113.61378 * 155.00471 * 14 13 11 17 17 C 1.53779 * 87.07967 * 89.11518 * 16 14 13 18 18 H 1.08996 * 113.61864 * 270.88221 * 17 16 14 19 19 C 1.53000 * 113.61385 * 140.06536 * 17 16 14 20 20 C 1.50693 * 109.47650 * 175.00110 * 19 17 16 21 21 N 1.31044 * 126.55056 * 269.71659 * 20 19 17 22 22 N 1.28885 * 107.91363 * 179.83156 * 21 20 19 23 23 N 1.28779 * 109.10473 * 0.43463 * 22 21 20 24 24 N 1.28995 * 108.72350 * 359.72733 * 23 22 21 25 25 C 1.53780 * 113.61557 * 252.50110 * 14 13 11 26 26 C 1.39821 * 119.86163 * 0.02562 * 10 9 5 27 27 C 1.37589 * 119.92972 * 359.97131 * 26 10 9 28 28 H 1.09002 * 109.47152 * 296.05197 * 1 2 3 29 29 H 1.09003 * 109.46590 * 56.04926 * 1 2 3 30 30 H 1.08997 * 109.47126 * 176.04513 * 1 2 3 31 31 H 1.09009 * 109.47072 * 183.95213 * 3 2 1 32 32 H 1.09001 * 109.47112 * 303.94481 * 3 2 1 33 33 H 1.08998 * 109.47536 * 63.95435 * 3 2 1 34 34 H 1.09003 * 109.47183 * 44.99847 * 6 5 4 35 35 H 0.96698 * 113.99885 * 59.99923 * 7 6 5 36 36 H 1.48505 * 109.99796 * 178.68378 * 8 6 5 37 37 H 1.48497 * 109.99951 * 299.99817 * 8 6 5 38 38 H 1.08002 * 120.04030 * 179.97438 * 9 5 4 39 39 H 0.96999 * 120.00301 * 0.02562 * 13 11 10 40 40 H 1.08996 * 113.61093 * 203.66622 * 16 14 13 41 41 H 1.09000 * 113.61186 * 334.48425 * 16 14 13 42 42 H 1.09009 * 109.47119 * 295.00616 * 19 17 16 43 43 H 1.09003 * 109.47282 * 54.99995 * 19 17 16 44 44 H 0.97000 * 125.44003 * 180.14304 * 22 21 20 45 45 H 1.08995 * 113.61541 * 25.43733 * 25 14 13 46 46 H 1.09005 * 113.61188 * 156.33505 * 25 14 13 47 47 H 1.07997 * 120.03313 * 180.02562 * 26 10 9 48 48 H 1.07998 * 119.96425 * 180.02562 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9672 -0.7250 1.0769 5 6 2.7793 -1.8331 0.8520 6 6 3.1120 -2.2488 -0.5578 7 8 1.9750 -2.8814 -1.1487 8 14 4.5428 -3.4415 -0.5322 9 6 3.2735 -2.5530 1.9157 10 6 2.9589 -2.1709 3.2229 11 6 3.4865 -2.9407 4.3653 12 8 4.1967 -3.9082 4.1704 13 7 3.1818 -2.5713 5.6252 14 6 3.7063 -3.3355 6.7597 15 1 4.6153 -3.8852 6.5158 16 6 3.8106 -2.5176 8.0579 17 6 2.3685 -2.9586 8.3588 18 1 1.6125 -2.2871 7.9520 19 6 2.1273 -3.3029 9.8300 20 6 0.6658 -3.6021 10.0429 21 7 -0.2678 -2.7416 10.3669 22 7 -1.3838 -3.3807 10.4523 23 7 -1.1766 -4.6262 10.1990 24 7 0.0766 -4.7938 9.9430 25 6 2.6427 -4.1861 7.4739 26 6 2.1421 -1.0581 3.4454 27 6 1.6512 -0.3424 2.3778 28 1 -0.3633 0.4513 0.9233 29 1 -0.3632 0.5740 -0.8525 30 1 -0.3633 -1.0252 -0.0709 31 1 3.0829 1.3431 -0.0708 32 1 1.5900 1.9162 -0.8525 33 1 1.7045 1.8724 0.9233 34 1 3.3826 -1.3691 -1.1417 35 1 1.1909 -2.3174 -1.1951 36 1 4.8602 -3.8836 -1.9139 37 1 5.7316 -2.7956 0.0800 38 1 3.9032 -3.4128 1.7407 39 1 2.6153 -1.7994 5.7807 40 1 4.5433 -2.9096 8.7631 41 1 3.9149 -1.4455 7.8912 42 1 2.7203 -4.1767 10.1006 43 1 2.4198 -2.4581 10.4536 44 1 -2.2416 -2.9872 10.6762 45 1 1.8027 -4.4608 6.8360 46 1 3.0562 -5.0342 8.0196 47 1 1.8976 -0.7601 4.4542 48 1 1.0206 0.5175 2.5490 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_280130_17857870_17970614.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 05:13:33 Heat of formation + Delta-G solvation = 123.849422 kcal Electronic energy + Delta-G solvation = -31656.011733 eV Core-core repulsion = 27330.768983 eV Total energy + Delta-G solvation = -4325.242750 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 359.174 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -45.44444 -41.84189 -40.96798 -39.50581 -37.71514 -37.30547 -35.64269 -34.96318 -34.15538 -32.73174 -31.40648 -30.19951 -28.60544 -26.95181 -26.63661 -26.40625 -25.54268 -24.76170 -23.41529 -22.98042 -22.63396 -21.31105 -20.25374 -20.11637 -19.14112 -18.08190 -18.01376 -17.82743 -17.36983 -16.73536 -16.42957 -16.18833 -15.99587 -15.96400 -15.76299 -15.37879 -15.26705 -15.18307 -15.03122 -14.65074 -14.51189 -14.21107 -13.96086 -13.66232 -13.49643 -13.32542 -13.26721 -13.10565 -13.01658 -12.73934 -12.65747 -12.54761 -12.42802 -12.21816 -12.20992 -12.04341 -11.59326 -11.42063 -11.29966 -11.26493 -11.05605 -10.94123 -10.18014 -10.11105 -9.80334 -9.63987 -4.92732 -0.42788 0.12704 0.14782 1.09733 1.31979 1.52472 1.53142 1.65100 1.85250 2.01939 2.60575 2.70712 2.91556 3.33880 3.47458 3.56597 3.59412 3.65520 3.69201 3.88604 3.91448 3.94459 4.01038 4.09846 4.17069 4.32354 4.33423 4.37677 4.42269 4.55660 4.56022 4.58854 4.63018 4.66761 4.73472 4.78455 4.88781 4.90603 4.92638 4.95908 4.99942 5.01115 5.10487 5.13000 5.17423 5.20685 5.25943 5.49800 5.63591 5.64942 5.74378 6.17641 6.44063 6.62422 7.12083 7.24194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.528 5.528 3 C 0.026 3.974 4 C 0.126 3.874 5 C -0.113 4.113 6 C -0.058 4.058 7 O -0.544 6.544 8 Si 0.771 3.229 9 C -0.059 4.059 10 C -0.146 4.146 11 C 0.559 3.441 12 O -0.571 6.571 13 N -0.695 5.695 14 C 0.108 3.892 15 H 0.090 0.910 16 C -0.118 4.118 17 C -0.095 4.095 18 H 0.092 0.908 19 C -0.015 4.015 20 C 0.173 3.827 21 N -0.307 5.307 22 N -0.211 5.211 23 N -0.071 5.071 24 N -0.305 5.305 25 C -0.146 4.146 26 C -0.059 4.059 27 C -0.152 4.152 28 H 0.043 0.957 29 H 0.088 0.912 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.087 0.913 33 H 0.044 0.956 34 H 0.080 0.920 35 H 0.374 0.626 36 H -0.286 1.286 37 H -0.273 1.273 38 H 0.137 0.863 39 H 0.413 0.587 40 H 0.117 0.883 41 H 0.091 0.909 42 H 0.109 0.891 43 H 0.117 0.883 44 H 0.490 0.510 45 H 0.050 0.950 46 H 0.100 0.900 47 H 0.159 0.841 48 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.073 8.478 4.801 10.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.250 5.250 3 C -0.120 4.120 4 C 0.031 3.969 5 C -0.114 4.114 6 C -0.167 4.167 7 O -0.351 6.351 8 Si 0.674 3.326 9 C -0.078 4.078 10 C -0.149 4.149 11 C 0.347 3.653 12 O -0.452 6.452 13 N -0.346 5.346 14 C 0.003 3.997 15 H 0.108 0.892 16 C -0.156 4.156 17 C -0.115 4.115 18 H 0.110 0.890 19 C -0.056 4.056 20 C -0.109 4.109 21 N -0.160 5.160 22 N -0.061 5.061 23 N -0.067 5.067 24 N -0.177 5.177 25 C -0.184 4.184 26 C -0.079 4.079 27 C -0.172 4.172 28 H 0.062 0.938 29 H 0.107 0.893 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.106 0.894 33 H 0.063 0.937 34 H 0.098 0.902 35 H 0.223 0.777 36 H -0.213 1.213 37 H -0.198 1.198 38 H 0.155 0.845 39 H 0.251 0.749 40 H 0.136 0.864 41 H 0.110 0.890 42 H 0.127 0.873 43 H 0.135 0.865 44 H 0.347 0.653 45 H 0.069 0.931 46 H 0.119 0.881 47 H 0.177 0.823 48 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -2.712 6.548 3.957 8.117 hybrid contribution -1.501 2.446 0.314 2.887 sum -4.212 8.995 4.270 10.811 Atomic orbital electron populations 1.22593 0.83978 1.03359 1.02407 1.59455 1.09934 1.15258 1.40305 1.22518 1.00715 0.86421 1.02375 1.18964 0.94815 0.93137 0.89973 1.20196 0.99467 0.95849 0.95890 1.25148 0.97527 1.03903 0.90153 1.86695 1.22493 1.43278 1.82634 0.92238 0.73042 0.86274 0.81030 1.21081 0.97286 0.98067 0.91352 1.19892 1.03191 0.98952 0.92891 1.18367 0.79678 0.83504 0.83733 1.90795 1.39261 1.29257 1.85846 1.45473 1.52173 1.32661 1.04319 1.21963 0.97541 0.94567 0.85642 0.89232 1.23325 0.96103 1.01360 0.94846 1.22511 0.98249 0.97746 0.93007 0.88981 1.20218 0.82378 1.05120 0.97836 1.26252 1.00238 0.85022 0.99435 1.74705 0.93094 1.26365 1.21839 1.47903 1.11387 1.04244 1.42590 1.78964 1.12209 1.01393 1.14086 1.75910 0.98361 1.24458 1.18951 1.23529 0.98638 0.97884 0.98369 1.21436 0.93550 0.92166 1.00700 1.21812 1.01711 1.01520 0.92134 0.93831 0.89341 0.90914 0.91879 0.89402 0.93700 0.90220 0.77702 1.21285 1.19828 0.84541 0.74908 0.86441 0.89026 0.87258 0.86474 0.65271 0.93128 0.88131 0.82349 0.83087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.13 9.20 127.69 1.18 1.04 16 2 N -0.53 1.29 3.68 -745.09 -2.74 -1.45 16 3 C 0.03 -0.12 9.38 127.69 1.20 1.08 16 4 C 0.13 -0.01 4.66 38.47 0.18 0.17 16 5 C -0.11 -0.40 5.27 -19.78 -0.10 -0.51 16 6 C -0.06 -0.27 2.30 71.24 0.16 -0.11 16 7 O -0.54 -3.05 12.65 -148.98 -1.89 -4.94 16 8 Si 0.77 4.60 30.17 68.60 2.07 6.67 16 9 C -0.06 -0.30 8.20 22.50 0.18 -0.12 16 10 C -0.15 -0.38 5.88 -20.07 -0.12 -0.49 16 11 C 0.56 2.91 7.76 86.69 0.67 3.59 16 12 O -0.57 -7.74 15.94 -4.00 -0.06 -7.80 16 13 N -0.69 1.38 5.21 -443.20 -2.31 -0.93 16 14 C 0.11 -0.25 4.32 45.52 0.20 -0.05 16 15 H 0.09 0.19 7.46 -2.39 -0.02 0.17 16 16 C -0.12 1.05 7.39 31.12 0.23 1.28 16 17 C -0.10 0.65 3.51 -10.27 -0.04 0.62 16 18 H 0.09 -0.63 8.12 -2.39 -0.02 -0.65 16 19 C -0.02 0.10 5.68 29.85 0.17 0.26 16 20 C 0.17 0.12 7.61 138.55 1.05 1.17 16 21 N -0.31 0.06 12.36 -51.20 -0.63 -0.58 16 22 N -0.21 0.50 7.91 37.00 0.29 0.79 16 23 N -0.07 -0.29 13.48 37.02 0.50 0.21 16 24 N -0.30 -1.76 12.50 -51.27 -0.64 -2.40 16 25 C -0.15 0.32 7.43 31.12 0.23 0.55 16 26 C -0.06 0.22 9.53 22.50 0.21 0.44 16 27 C -0.15 0.55 8.53 22.36 0.19 0.74 16 28 H 0.04 -0.31 7.09 -2.39 -0.02 -0.33 16 29 H 0.09 -0.66 8.12 -2.39 -0.02 -0.68 16 30 H 0.07 -0.38 7.82 -2.39 -0.02 -0.40 16 31 H 0.06 -0.17 8.14 -2.38 -0.02 -0.18 16 32 H 0.09 -0.56 8.12 -2.39 -0.02 -0.58 16 33 H 0.04 -0.29 7.32 -2.39 -0.02 -0.30 16 34 H 0.08 0.35 7.77 -2.39 -0.02 0.33 16 35 H 0.37 0.43 8.05 -74.06 -0.60 -0.17 16 36 H -0.29 -3.23 7.11 99.48 0.71 -2.52 16 37 H -0.27 -2.53 7.11 99.48 0.71 -1.82 16 38 H 0.14 0.85 4.70 -2.91 -0.01 0.84 16 39 H 0.41 -3.35 6.72 -92.71 -0.62 -3.98 16 40 H 0.12 -1.32 8.10 -2.39 -0.02 -1.33 16 41 H 0.09 -1.00 8.14 -2.39 -0.02 -1.02 16 42 H 0.11 -0.80 7.85 -2.38 -0.02 -0.82 16 43 H 0.12 -1.13 8.14 -2.39 -0.02 -1.15 16 44 H 0.49 -5.40 8.96 -347.68 -3.12 -8.52 16 45 H 0.05 0.12 8.14 -2.39 -0.02 0.10 16 46 H 0.10 -0.25 7.90 -2.38 -0.02 -0.27 16 47 H 0.16 -1.70 6.39 -2.91 -0.02 -1.72 16 48 H 0.15 -1.21 6.99 -2.91 -0.02 -1.23 16 Total: 0.00 -23.95 394.83 -3.07 -27.01 By element: Atomic # 1 Polarization: -22.98 SS G_CDS: -3.26 Total: -26.23 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: 5.60 Total: 9.66 kcal Atomic # 7 Polarization: 1.17 SS G_CDS: -5.53 Total: -4.37 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: -1.95 Total: -12.74 kcal Atomic # 14 Polarization: 4.60 SS G_CDS: 2.07 Total: 6.67 kcal Total: -23.95 -3.07 -27.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_280130_17857870_17970614.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.864 kcal (2) G-P(sol) polarization free energy of solvation -23.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds