Wall clock time and date at job start Sat Mar 6 2021 06:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33815 * 122.44949 * 2 1 4 4 C 1.50693 * 124.52321 * 359.93732 * 3 2 1 5 5 O 1.42907 * 109.47661 * 330.00639 * 4 3 2 6 6 Si 1.86298 * 109.47618 * 210.00330 * 4 3 2 7 7 S 1.70613 * 110.95268 * 180.20961 * 3 2 1 8 8 C 1.75826 * 91.56334 * 359.70258 * 7 3 2 9 9 C 1.46588 * 125.45671 * 180.09751 * 8 7 3 10 10 O 1.21705 * 119.99933 * 180.23347 * 9 8 7 11 11 N 1.34775 * 119.99956 * 0.22333 * 9 8 7 12 12 C 1.46507 * 119.99936 * 180.02562 * 11 9 8 13 13 H 1.09000 * 112.84896 * 334.66993 * 12 11 9 14 14 C 1.53777 * 113.61338 * 105.86311 * 12 11 9 15 15 C 1.53962 * 87.01618 * 139.95054 * 14 12 11 16 16 H 1.09007 * 113.52913 * 89.19301 * 15 14 12 17 17 C 1.52999 * 113.74200 * 220.05375 * 15 14 12 18 18 C 1.50696 * 109.47192 * 272.59793 * 17 15 14 19 19 N 1.31040 * 126.55454 * 269.71667 * 18 17 15 20 20 N 1.28879 * 107.91758 * 179.83917 * 19 18 17 21 21 N 1.28778 * 109.10316 * 0.43273 * 20 19 18 22 22 N 1.29002 * 108.72574 * 359.72947 * 21 20 19 23 23 C 1.53774 * 113.61288 * 203.47444 * 12 11 9 24 24 C 1.36641 * 109.08797 * 0.29261 * 8 7 3 25 25 H 1.08994 * 109.47372 * 90.00249 * 1 2 3 26 26 H 1.08996 * 109.47016 * 210.00143 * 1 2 3 27 27 H 1.09000 * 109.46945 * 330.00259 * 1 2 3 28 28 H 1.09000 * 109.46936 * 90.00263 * 4 3 2 29 29 H 0.96697 * 114.00527 * 179.97438 * 5 4 3 30 30 H 1.48506 * 109.99834 * 298.68714 * 6 4 3 31 31 H 1.48502 * 110.00011 * 59.99978 * 6 4 3 32 32 H 0.97001 * 120.00444 * 0.02562 * 11 9 8 33 33 H 1.09001 * 113.61908 * 254.53029 * 14 12 11 34 34 H 1.09004 * 113.61523 * 25.43867 * 14 12 11 35 35 H 1.08993 * 109.47229 * 32.60287 * 17 15 14 36 36 H 1.09004 * 109.46858 * 152.60222 * 17 15 14 37 37 H 0.97000 * 125.45061 * 180.18560 * 20 19 18 38 38 H 1.08995 * 113.61820 * 334.56687 * 23 12 11 39 39 H 1.09010 * 113.61358 * 105.47218 * 23 12 11 40 40 H 1.08000 * 123.35537 * 179.80319 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1292 0.0000 4 6 1.6356 2.5161 -0.0014 5 8 0.3759 2.4977 -0.6760 6 14 2.7932 3.6822 -0.8793 7 16 3.8969 0.7892 -0.0058 8 6 3.5936 -0.9427 0.0008 9 6 4.6231 -1.9863 0.0019 10 8 4.3001 -3.1597 0.0024 11 7 5.9273 -1.6463 0.0021 12 6 6.9562 -2.6893 0.0026 13 1 6.6070 -3.6281 0.4325 14 6 7.6632 -2.8577 -1.3526 15 6 8.9693 -3.0386 -0.5577 16 1 9.1712 -4.0738 -0.2821 17 6 10.1773 -2.3462 -1.1919 18 6 10.8234 -3.2750 -2.1873 19 7 11.7805 -4.1363 -1.9439 20 7 12.0581 -4.7427 -3.0468 21 7 11.3058 -4.2791 -3.9835 22 7 10.5343 -3.3734 -3.4850 23 6 8.3087 -2.2200 0.5640 24 6 2.2446 -1.1601 0.0005 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8899 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.4926 2.8510 1.0260 29 1 -0.0622 3.3589 -0.7148 30 1 4.0964 3.7345 -0.1690 31 1 2.9965 3.2364 -2.2811 32 1 6.1848 -0.7111 0.0019 33 1 7.3556 -3.7500 -1.8978 34 1 7.6478 -1.9580 -1.9679 35 1 9.8507 -1.4391 -1.7002 36 1 10.8974 -2.0883 -0.4152 37 1 12.7291 -5.4348 -3.1548 38 1 8.4700 -1.1459 0.4737 39 1 8.5213 -2.5984 1.5639 40 1 1.8019 -2.1452 0.0009 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_280130_17857876_17904420.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 06:02:16 Heat of formation + Delta-G solvation = 109.876938 kcal Electronic energy + Delta-G solvation = -25408.665047 eV Core-core repulsion = 21548.469800 eV Total energy + Delta-G solvation = -3860.195247 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 336.104 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -45.49478 -41.39524 -40.13120 -39.33880 -37.33879 -35.72272 -35.05620 -34.25465 -32.33715 -30.42450 -30.20766 -26.91988 -26.75427 -25.59278 -24.93630 -24.07168 -22.66901 -21.87901 -20.82618 -20.17815 -19.96866 -19.21805 -18.33818 -18.12173 -17.54829 -17.17119 -16.51867 -16.36008 -16.04986 -15.99030 -15.74712 -15.01245 -14.89705 -14.68601 -14.47886 -14.43968 -14.30578 -13.69388 -13.45867 -13.34993 -13.27212 -13.09249 -12.91282 -12.72724 -12.54996 -12.36114 -12.29750 -12.24063 -12.05956 -12.03511 -11.93849 -11.42259 -11.33018 -11.08810 -10.64976 -10.24611 -9.74270 -9.46674 -5.15186 -0.77516 0.10131 0.18676 0.54115 1.03632 1.04062 1.31806 1.48086 1.57771 1.93193 1.94000 1.96025 2.86025 3.27608 3.30958 3.42821 3.54450 3.61691 3.73594 3.78123 3.81046 4.05137 4.25265 4.26806 4.33974 4.42822 4.53484 4.54208 4.57875 4.70246 4.73865 4.76653 4.82246 4.88782 4.90871 4.94537 4.99895 5.06849 5.18328 5.33258 5.44039 5.49106 5.60264 6.25553 6.89520 6.92584 7.18919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.102 4.102 3 C -0.205 4.205 4 C -0.041 4.041 5 O -0.551 6.551 6 Si 0.754 3.246 7 S 0.214 5.786 8 C -0.283 4.283 9 C 0.590 3.410 10 O -0.571 6.571 11 N -0.702 5.702 12 C 0.112 3.888 13 H 0.097 0.903 14 C -0.146 4.146 15 C -0.093 4.093 16 H 0.090 0.910 17 C -0.011 4.011 18 C 0.172 3.828 19 N -0.308 5.308 20 N -0.210 5.210 21 N -0.070 5.070 22 N -0.304 5.304 23 C -0.117 4.117 24 C -0.057 4.057 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.089 0.911 28 H 0.111 0.889 29 H 0.405 0.595 30 H -0.255 1.255 31 H -0.294 1.294 32 H 0.410 0.590 33 H 0.050 0.950 34 H 0.097 0.903 35 H 0.112 0.888 36 H 0.121 0.879 37 H 0.490 0.510 38 H 0.116 0.884 39 H 0.093 0.907 40 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.968 8.208 3.841 9.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.114 4.114 3 C -0.324 4.324 4 C -0.152 4.152 5 O -0.362 6.362 6 Si 0.657 3.343 7 S 0.481 5.519 8 C -0.402 4.402 9 C 0.377 3.623 10 O -0.452 6.452 11 N -0.352 5.352 12 C 0.008 3.992 13 H 0.115 0.885 14 C -0.185 4.185 15 C -0.113 4.113 16 H 0.109 0.891 17 C -0.051 4.051 18 C -0.111 4.111 19 N -0.160 5.160 20 N -0.060 5.060 21 N -0.066 5.066 22 N -0.177 5.177 23 C -0.155 4.155 24 C -0.091 4.091 25 H 0.087 0.913 26 H 0.081 0.919 27 H 0.108 0.892 28 H 0.128 0.872 29 H 0.258 0.742 30 H -0.181 1.181 31 H -0.221 1.221 32 H 0.247 0.753 33 H 0.069 0.931 34 H 0.116 0.884 35 H 0.130 0.870 36 H 0.139 0.861 37 H 0.348 0.652 38 H 0.134 0.866 39 H 0.111 0.889 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 4.085 7.521 2.779 8.999 hybrid contribution -1.016 -1.803 0.184 2.077 sum 3.069 5.719 2.963 7.135 Atomic orbital electron populations 1.20500 0.87494 1.03157 1.02743 1.18879 0.99485 0.90197 1.02876 1.23744 0.98330 1.00216 1.10131 1.24176 0.93511 0.94453 1.03085 1.86530 1.32379 1.38413 1.78869 0.94064 0.77866 0.85496 0.76918 1.82704 1.02830 0.97231 1.69091 1.24638 0.97908 0.97894 1.19774 1.17192 0.82749 0.86941 0.75426 1.90821 1.82385 1.19908 1.52066 1.45787 1.04420 1.10870 1.74168 1.22661 0.86456 0.91966 0.98143 0.88454 1.23617 0.95695 1.02591 0.96618 1.22240 0.92139 1.00299 0.96630 0.89127 1.20166 0.96381 0.94390 0.94158 1.26234 0.93938 0.98301 0.92619 1.74706 1.18465 1.11084 1.11753 1.47896 1.27706 1.28362 1.02072 1.78952 1.02225 1.07495 1.17892 1.75900 1.19529 1.13111 1.09139 1.23352 0.90924 1.02185 0.99028 1.20879 0.91388 1.00435 0.96407 0.91323 0.91914 0.89244 0.87204 0.74227 1.18052 1.22112 0.75263 0.93145 0.88441 0.86988 0.86121 0.65200 0.86582 0.88856 0.83301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.19 8.70 71.24 0.62 0.43 16 2 C -0.10 -0.57 5.75 -21.05 -0.12 -0.69 16 3 C -0.21 -0.62 5.57 24.68 0.14 -0.48 16 4 C -0.04 0.15 2.75 71.23 0.20 0.35 16 5 O -0.55 2.46 9.81 -148.98 -1.46 1.00 16 6 Si 0.75 -3.81 31.30 68.60 2.15 -1.66 16 7 S 0.21 0.45 19.78 -56.49 -1.12 -0.67 16 8 C -0.28 -2.14 6.45 24.08 0.16 -1.98 16 9 C 0.59 5.81 7.78 86.42 0.67 6.48 16 10 O -0.57 -10.23 16.46 -4.37 -0.07 -10.30 16 11 N -0.70 -1.64 5.36 -444.09 -2.38 -4.02 16 12 C 0.11 0.10 4.21 45.51 0.19 0.30 16 13 H 0.10 0.54 7.50 -2.39 -0.02 0.52 16 14 C -0.15 -0.11 7.45 31.18 0.23 0.12 16 15 C -0.09 0.33 3.63 -10.21 -0.04 0.30 16 16 H 0.09 -0.15 8.12 -2.38 -0.02 -0.17 16 17 C -0.01 0.05 5.68 29.85 0.17 0.22 16 18 C 0.17 0.46 7.61 138.55 1.05 1.51 16 19 N -0.31 -0.63 12.36 -51.20 -0.63 -1.26 16 20 N -0.21 0.09 7.91 37.00 0.29 0.38 16 21 N -0.07 -0.41 13.48 37.02 0.50 0.09 16 22 N -0.30 -2.28 12.50 -51.26 -0.64 -2.92 16 23 C -0.12 0.75 7.39 31.12 0.23 0.98 16 24 C -0.06 -0.47 9.80 21.72 0.21 -0.26 16 25 H 0.07 0.23 8.14 -2.39 -0.02 0.21 16 26 H 0.06 0.09 8.13 -2.39 -0.02 0.07 16 27 H 0.09 0.04 6.42 -2.39 -0.02 0.02 16 28 H 0.11 -0.92 7.96 -2.39 -0.02 -0.94 16 29 H 0.41 -6.03 8.74 -74.06 -0.65 -6.67 16 30 H -0.26 0.58 7.11 99.48 0.71 1.29 16 31 H -0.29 -1.17 7.11 99.48 0.71 -0.46 16 32 H 0.41 -1.26 7.83 -92.71 -0.73 -1.99 16 33 H 0.05 0.29 8.14 -2.39 -0.02 0.27 16 34 H 0.10 -0.05 7.91 -2.39 -0.02 -0.07 16 35 H 0.11 -0.74 7.86 -2.39 -0.02 -0.76 16 36 H 0.12 -1.00 8.14 -2.38 -0.02 -1.02 16 37 H 0.49 -4.51 8.96 -347.67 -3.12 -7.63 16 38 H 0.12 -1.25 8.07 -2.39 -0.02 -1.26 16 39 H 0.09 -0.70 8.14 -2.38 -0.02 -0.72 16 40 H 0.15 1.29 8.06 -2.91 -0.02 1.27 16 Total: 0.00 -27.17 354.09 -2.98 -30.15 By element: Atomic # 1 Polarization: -14.73 SS G_CDS: -3.32 Total: -18.05 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: 3.71 Total: 7.27 kcal Atomic # 7 Polarization: -4.87 SS G_CDS: -2.86 Total: -7.73 kcal Atomic # 8 Polarization: -7.77 SS G_CDS: -1.53 Total: -9.30 kcal Atomic # 14 Polarization: -3.81 SS G_CDS: 2.15 Total: -1.66 kcal Atomic # 16 Polarization: 0.45 SS G_CDS: -1.12 Total: -0.67 kcal Total: -27.17 -2.98 -30.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_280130_17857876_17904420.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.027 kcal (2) G-P(sol) polarization free energy of solvation -27.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds