Wall clock time and date at job start Sat Mar 6 2021 06:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86293 * 109.47209 * 2 1 4 4 C 1.50707 * 109.46918 * 240.00026 * 2 1 3 5 5 C 1.34849 * 125.88803 * 120.02937 * 4 2 1 6 6 C 1.40893 * 107.41614 * 179.97438 * 5 4 2 7 7 C 1.34846 * 107.41627 * 359.97438 * 6 5 4 8 8 C 1.50700 * 125.89125 * 179.97438 * 7 6 5 9 9 C 1.50702 * 109.46869 * 85.02316 * 8 7 6 10 10 O 1.21283 * 120.00262 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99928 * 179.72354 * 9 8 7 12 12 C 1.46499 * 120.00199 * 180.27479 * 11 9 8 13 13 H 1.09004 * 112.84964 * 25.33489 * 12 11 9 14 14 C 1.53778 * 113.61783 * 156.52956 * 12 11 9 15 15 C 1.53780 * 87.08089 * 139.98334 * 14 12 11 16 16 H 1.09001 * 113.61342 * 89.20285 * 15 14 12 17 17 C 1.52998 * 113.61471 * 220.01881 * 15 14 12 18 18 C 1.50701 * 109.47252 * 185.00258 * 17 15 14 19 19 N 1.31037 * 126.55042 * 90.00409 * 18 17 15 20 20 N 1.28878 * 107.91626 * 180.02562 * 19 18 17 21 21 N 1.28780 * 109.10308 * 359.97438 * 20 19 18 22 22 N 1.28994 * 108.72644 * 359.72613 * 21 20 19 23 23 C 1.53778 * 113.61975 * 254.14080 * 12 11 9 24 24 N 1.36336 * 125.89342 * 300.30848 * 4 2 1 25 25 H 0.96702 * 114.00039 * 60.00070 * 1 2 3 26 26 H 1.09000 * 109.47410 * 120.00647 * 2 1 3 27 27 H 1.48505 * 110.00161 * 298.68251 * 3 2 1 28 28 H 1.48500 * 109.99764 * 60.00004 * 3 2 1 29 29 H 1.08000 * 126.29360 * 359.97438 * 5 4 2 30 30 H 1.07996 * 126.29065 * 180.02562 * 6 5 4 31 31 H 1.09004 * 109.47210 * 325.02610 * 8 7 6 32 32 H 1.08994 * 109.47551 * 205.02262 * 8 7 6 33 33 H 0.97000 * 120.00317 * 0.28382 * 11 9 8 34 34 H 1.09002 * 113.61621 * 254.53540 * 14 12 11 35 35 H 1.09003 * 113.61369 * 25.35192 * 14 12 11 36 36 H 1.08998 * 109.47667 * 305.00312 * 17 15 14 37 37 H 1.09005 * 109.47213 * 65.00210 * 17 15 14 38 38 H 0.97001 * 125.45113 * 179.97438 * 20 19 18 39 39 H 1.09001 * 113.61335 * 334.56928 * 23 12 11 40 40 H 1.09000 * 113.61824 * 105.46531 * 23 12 11 41 41 H 0.97005 * 125.63819 * 0.02562 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 2.7102 -0.1728 -2.1911 6 6 2.9455 -1.1749 -3.1532 7 6 2.3019 -2.2868 -2.7436 8 6 2.2762 -3.6093 -3.4655 9 6 3.4947 -4.4116 -3.0877 10 8 4.3040 -3.9546 -2.3085 11 7 3.6820 -5.6394 -3.6110 12 6 4.8634 -6.4218 -3.2391 13 1 5.2642 -6.1456 -2.2637 14 6 4.6817 -7.9376 -3.4236 15 6 6.1257 -7.9670 -3.9515 16 1 6.8728 -8.1149 -3.1716 17 6 6.3223 -8.9011 -5.1471 18 6 7.7842 -8.9529 -5.5092 19 7 8.6750 -9.7918 -5.0404 20 7 9.8075 -9.5157 -5.5901 21 7 9.6541 -8.5228 -6.3957 22 7 8.4170 -8.1579 -6.3723 23 6 5.9292 -6.4919 -4.3454 24 7 1.6722 -2.0059 -1.5673 25 1 -0.3933 0.4417 -0.7651 26 1 1.7924 -0.5139 0.8899 27 1 1.5879 2.4585 -1.2242 28 1 1.5615 2.4678 1.2085 29 1 3.0849 0.8397 -2.2180 30 1 3.5339 -1.0717 -4.0528 31 1 2.2747 -3.4359 -4.5417 32 1 1.3779 -4.1591 -3.1849 33 1 3.0346 -6.0051 -4.2340 34 1 4.5480 -8.4786 -2.4868 35 1 3.9357 -8.1998 -4.1739 36 1 5.9767 -9.9017 -4.8873 37 1 5.7504 -8.5286 -5.9971 38 1 10.6421 -9.9813 -5.4238 39 1 5.5260 -6.3580 -5.3492 40 1 6.8014 -5.8674 -4.1518 41 1 1.1317 -2.6262 -1.0534 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_280130_17857876_17907336.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 06:02:27 Heat of formation + Delta-G solvation = 123.852776 kcal Electronic energy + Delta-G solvation = -25346.652441 eV Core-core repulsion = 21460.711215 eV Total energy + Delta-G solvation = -3885.941226 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 319.143 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -45.42352 -42.26264 -41.08488 -39.43892 -37.75934 -35.61490 -34.91409 -34.12874 -32.98769 -31.82228 -30.51016 -29.24376 -26.81959 -25.61489 -25.44868 -24.49366 -22.83248 -21.68688 -21.26328 -21.10536 -20.58150 -20.12225 -18.94028 -18.09742 -18.02293 -17.47554 -16.79541 -16.49483 -16.30679 -16.23136 -15.84531 -15.24748 -15.09267 -14.82169 -14.53886 -14.50707 -14.14793 -13.96323 -13.72894 -13.69792 -13.61913 -13.47452 -13.24226 -12.84802 -12.65375 -12.26426 -12.24106 -12.09036 -12.03997 -11.96063 -11.72529 -11.45703 -11.13108 -10.81538 -10.72294 -10.01387 -9.68004 -8.86654 -4.83656 0.18440 1.11799 1.18487 1.32309 1.37062 1.66303 1.72480 1.97157 1.98986 2.32733 2.55261 2.83809 3.25786 3.39184 3.40263 3.50582 3.66188 3.71760 3.77221 3.86457 3.95989 4.05146 4.19023 4.32885 4.38826 4.50402 4.51626 4.58087 4.60541 4.63421 4.65806 4.72008 4.82517 4.86179 4.98059 5.02959 5.22713 5.35717 5.39604 5.46473 5.54012 6.07690 6.23288 6.41474 6.47262 6.69904 7.26252 7.27505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.538 6.538 2 C -0.056 4.056 3 Si 0.715 3.285 4 C -0.009 4.009 5 C -0.186 4.186 6 C -0.173 4.173 7 C 0.037 3.963 8 C -0.073 4.073 9 C 0.512 3.488 10 O -0.522 6.522 11 N -0.723 5.723 12 C 0.123 3.877 13 H 0.114 0.886 14 C -0.137 4.137 15 C -0.104 4.104 16 H 0.097 0.903 17 C -0.012 4.012 18 C 0.176 3.824 19 N -0.301 5.301 20 N -0.230 5.230 21 N -0.050 5.050 22 N -0.273 5.273 23 C -0.144 4.144 24 N -0.536 5.536 25 H 0.378 0.622 26 H 0.115 0.885 27 H -0.257 1.257 28 H -0.258 1.258 29 H 0.141 0.859 30 H 0.137 0.863 31 H 0.117 0.883 32 H 0.099 0.901 33 H 0.401 0.599 34 H 0.079 0.921 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.475 0.525 39 H 0.091 0.909 40 H 0.072 0.928 41 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.870 -4.609 -1.766 5.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.344 6.344 2 C -0.165 4.165 3 Si 0.615 3.385 4 C -0.123 4.123 5 C -0.211 4.211 6 C -0.198 4.198 7 C -0.077 4.077 8 C -0.114 4.114 9 C 0.297 3.703 10 O -0.396 6.396 11 N -0.375 5.375 12 C 0.018 3.982 13 H 0.132 0.868 14 C -0.175 4.175 15 C -0.124 4.124 16 H 0.115 0.885 17 C -0.052 4.052 18 C -0.107 4.107 19 N -0.153 5.153 20 N -0.076 5.076 21 N -0.046 5.046 22 N -0.146 5.146 23 C -0.183 4.183 24 N -0.131 5.131 25 H 0.226 0.774 26 H 0.133 0.867 27 H -0.181 1.181 28 H -0.183 1.183 29 H 0.159 0.841 30 H 0.154 0.846 31 H 0.135 0.865 32 H 0.117 0.883 33 H 0.236 0.764 34 H 0.098 0.902 35 H 0.110 0.890 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.329 0.671 39 H 0.110 0.890 40 H 0.091 0.909 41 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -0.006 -3.630 -0.869 3.732 hybrid contribution -1.275 -1.350 -0.346 1.889 sum -1.281 -4.980 -1.214 5.283 Atomic orbital electron populations 1.86573 1.18059 1.80214 1.49559 1.24786 0.83606 1.11529 0.96600 0.94209 0.91665 0.72479 0.80195 1.20762 1.06013 0.85610 0.99868 1.20650 1.04384 1.00145 0.95932 1.20592 1.04828 0.92547 1.01808 1.19484 1.02693 0.95759 0.89754 1.20144 0.97320 0.91800 1.02094 1.20618 0.87473 0.81486 0.80678 1.90769 1.45448 1.69446 1.33982 1.45979 1.25970 1.17180 1.48336 1.22475 0.85972 0.90106 0.99654 0.86829 1.23385 0.96462 0.95380 1.02306 1.22365 0.97729 0.95127 0.97184 0.88518 1.19990 0.84068 1.02153 0.99012 1.25697 0.99408 0.90970 0.94640 1.74718 0.92795 1.25388 1.22370 1.47835 1.10861 1.22396 1.26530 1.79012 1.13340 1.01685 1.10537 1.75919 0.97373 1.22976 1.18352 1.23588 0.99483 0.95531 0.99653 1.41781 1.40967 1.11060 1.19253 0.77446 0.86743 1.18094 1.18299 0.84110 0.84561 0.86489 0.88277 0.76408 0.90203 0.88957 0.88301 0.88140 0.67084 0.89007 0.90892 0.75125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.85 12.88 -35.23 -0.45 -1.31 16 2 C -0.06 -0.04 3.08 36.01 0.11 0.07 16 3 Si 0.72 -0.09 30.58 -169.99 -5.20 -5.29 16 4 C -0.01 -0.02 6.51 -81.79 -0.53 -0.55 16 5 C -0.19 -0.42 9.37 -39.78 -0.37 -0.79 16 6 C -0.17 -0.44 10.76 -39.78 -0.43 -0.86 16 7 C 0.04 0.05 5.66 -81.79 -0.46 -0.41 16 8 C -0.07 0.13 6.24 -29.03 -0.18 -0.05 16 9 C 0.51 0.32 7.82 -10.98 -0.09 0.24 16 10 O -0.52 -2.86 15.65 5.55 0.09 -2.77 16 11 N -0.72 1.58 5.36 -53.02 -0.28 1.30 16 12 C 0.12 -0.18 4.21 -67.12 -0.28 -0.46 16 13 H 0.11 0.09 7.50 -51.93 -0.39 -0.30 16 14 C -0.14 0.51 7.39 -25.92 -0.19 0.32 16 15 C -0.10 0.25 3.64 -89.72 -0.33 -0.07 16 16 H 0.10 -0.14 8.12 -51.93 -0.42 -0.56 16 17 C -0.01 0.03 5.68 -27.88 -0.16 -0.13 16 18 C 0.18 0.15 7.61 -156.63 -1.19 -1.04 16 19 N -0.30 -0.22 12.36 32.47 0.40 0.18 16 20 N -0.23 0.15 7.91 60.34 0.48 0.63 16 21 N -0.05 -0.11 13.48 60.35 0.81 0.71 16 22 N -0.27 -0.78 12.50 32.45 0.41 -0.38 16 23 C -0.14 0.19 7.44 -25.83 -0.19 -0.01 16 24 N -0.54 -0.72 6.07 -5.44 -0.03 -0.75 16 25 H 0.38 -0.40 8.70 45.56 0.40 -0.01 16 26 H 0.11 0.04 7.96 -51.93 -0.41 -0.38 16 27 H -0.26 -0.46 7.11 56.52 0.40 -0.06 16 28 H -0.26 -0.70 7.11 56.52 0.40 -0.30 16 29 H 0.14 0.08 6.22 -52.49 -0.33 -0.25 16 30 H 0.14 0.20 8.06 -52.49 -0.42 -0.23 16 31 H 0.12 -0.45 8.14 -51.93 -0.42 -0.87 16 32 H 0.10 -0.40 8.14 -51.93 -0.42 -0.83 16 33 H 0.40 -2.09 8.71 -40.82 -0.36 -2.45 16 34 H 0.08 -0.29 8.14 -51.93 -0.42 -0.71 16 35 H 0.09 -0.49 8.07 -51.93 -0.42 -0.90 16 36 H 0.10 -0.35 8.14 -51.93 -0.42 -0.78 16 37 H 0.10 -0.34 7.85 -51.93 -0.41 -0.75 16 38 H 0.48 -2.34 8.96 -340.53 -3.05 -5.39 16 39 H 0.09 -0.17 7.90 -51.93 -0.41 -0.58 16 40 H 0.07 0.06 8.14 -51.93 -0.42 -0.37 16 41 H 0.41 -0.12 8.96 -40.82 -0.37 -0.49 16 LS Contribution 354.17 15.07 5.34 5.34 Total: 0.00 -11.66 354.17 -10.64 -22.30 By element: Atomic # 1 Polarization: -8.29 SS G_CDS: -7.90 Total: -16.19 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: -4.30 Total: -3.75 kcal Atomic # 7 Polarization: -0.10 SS G_CDS: 1.78 Total: 1.68 kcal Atomic # 8 Polarization: -3.71 SS G_CDS: -0.37 Total: -4.08 kcal Atomic # 14 Polarization: -0.09 SS G_CDS: -5.20 Total: -5.29 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -11.66 -10.64 -22.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_280130_17857876_17907336.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.151 kcal (2) G-P(sol) polarization free energy of solvation -11.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds