Wall clock time and date at job start Sat Mar 6 2021 06:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86293 * 109.47209 * 2 1 4 4 C 1.50707 * 109.46918 * 240.00026 * 2 1 3 5 5 C 1.34849 * 125.88803 * 120.02937 * 4 2 1 6 6 C 1.40893 * 107.41614 * 179.97438 * 5 4 2 7 7 C 1.34846 * 107.41627 * 359.97438 * 6 5 4 8 8 C 1.50700 * 125.89125 * 179.97438 * 7 6 5 9 9 C 1.50702 * 109.46869 * 85.02316 * 8 7 6 10 10 O 1.21283 * 120.00262 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99928 * 179.72354 * 9 8 7 12 12 C 1.46499 * 120.00199 * 180.27479 * 11 9 8 13 13 H 1.09004 * 112.84964 * 25.33489 * 12 11 9 14 14 C 1.53778 * 113.61783 * 156.52956 * 12 11 9 15 15 C 1.53780 * 87.08089 * 139.98334 * 14 12 11 16 16 H 1.09001 * 113.61342 * 89.20285 * 15 14 12 17 17 C 1.52998 * 113.61471 * 220.01881 * 15 14 12 18 18 C 1.50701 * 109.47252 * 185.00258 * 17 15 14 19 19 N 1.31037 * 126.55042 * 90.00409 * 18 17 15 20 20 N 1.28878 * 107.91626 * 180.02562 * 19 18 17 21 21 N 1.28780 * 109.10308 * 359.97438 * 20 19 18 22 22 N 1.28994 * 108.72644 * 359.72613 * 21 20 19 23 23 C 1.53778 * 113.61975 * 254.14080 * 12 11 9 24 24 N 1.36336 * 125.89342 * 300.30848 * 4 2 1 25 25 H 0.96702 * 114.00039 * 60.00070 * 1 2 3 26 26 H 1.09000 * 109.47410 * 120.00647 * 2 1 3 27 27 H 1.48505 * 110.00161 * 298.68251 * 3 2 1 28 28 H 1.48500 * 109.99764 * 60.00004 * 3 2 1 29 29 H 1.08000 * 126.29360 * 359.97438 * 5 4 2 30 30 H 1.07996 * 126.29065 * 180.02562 * 6 5 4 31 31 H 1.09004 * 109.47210 * 325.02610 * 8 7 6 32 32 H 1.08994 * 109.47551 * 205.02262 * 8 7 6 33 33 H 0.97000 * 120.00317 * 0.28382 * 11 9 8 34 34 H 1.09002 * 113.61621 * 254.53540 * 14 12 11 35 35 H 1.09003 * 113.61369 * 25.35192 * 14 12 11 36 36 H 1.08998 * 109.47667 * 305.00312 * 17 15 14 37 37 H 1.09005 * 109.47213 * 65.00210 * 17 15 14 38 38 H 0.97001 * 125.45113 * 179.97438 * 20 19 18 39 39 H 1.09001 * 113.61335 * 334.56928 * 23 12 11 40 40 H 1.09000 * 113.61824 * 105.46531 * 23 12 11 41 41 H 0.97005 * 125.63819 * 0.02562 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 2.7102 -0.1728 -2.1911 6 6 2.9455 -1.1749 -3.1532 7 6 2.3019 -2.2868 -2.7436 8 6 2.2762 -3.6093 -3.4655 9 6 3.4947 -4.4116 -3.0877 10 8 4.3040 -3.9546 -2.3085 11 7 3.6820 -5.6394 -3.6110 12 6 4.8634 -6.4218 -3.2391 13 1 5.2642 -6.1456 -2.2637 14 6 4.6817 -7.9376 -3.4236 15 6 6.1257 -7.9670 -3.9515 16 1 6.8728 -8.1149 -3.1716 17 6 6.3223 -8.9011 -5.1471 18 6 7.7842 -8.9529 -5.5092 19 7 8.6750 -9.7918 -5.0404 20 7 9.8075 -9.5157 -5.5901 21 7 9.6541 -8.5228 -6.3957 22 7 8.4170 -8.1579 -6.3723 23 6 5.9292 -6.4919 -4.3454 24 7 1.6722 -2.0059 -1.5673 25 1 -0.3933 0.4417 -0.7651 26 1 1.7924 -0.5139 0.8899 27 1 1.5879 2.4585 -1.2242 28 1 1.5615 2.4678 1.2085 29 1 3.0849 0.8397 -2.2180 30 1 3.5339 -1.0717 -4.0528 31 1 2.2747 -3.4359 -4.5417 32 1 1.3779 -4.1591 -3.1849 33 1 3.0346 -6.0051 -4.2340 34 1 4.5480 -8.4786 -2.4868 35 1 3.9357 -8.1998 -4.1739 36 1 5.9767 -9.9017 -4.8873 37 1 5.7504 -8.5286 -5.9971 38 1 10.6421 -9.9813 -5.4238 39 1 5.5260 -6.3580 -5.3492 40 1 6.8014 -5.8674 -4.1518 41 1 1.1317 -2.6262 -1.0534 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_280130_17857876_17907336.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 06:02:26 Heat of formation + Delta-G solvation = 117.980188 kcal Electronic energy + Delta-G solvation = -25346.907095 eV Core-core repulsion = 21460.711215 eV Total energy + Delta-G solvation = -3886.195881 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 319.143 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -45.45681 -42.32358 -41.02771 -39.42320 -37.84324 -35.60927 -34.94918 -34.14386 -32.96662 -31.91427 -30.44112 -29.23529 -26.64770 -25.64124 -25.50318 -24.48362 -22.79836 -21.68828 -21.34917 -21.11670 -20.47647 -20.11819 -19.00363 -18.11176 -17.99859 -17.45784 -16.77493 -16.45654 -16.34479 -16.20254 -15.79228 -15.31681 -15.11898 -14.83415 -14.61178 -14.41903 -14.20835 -14.02123 -13.82070 -13.62159 -13.48574 -13.32105 -13.24746 -12.79220 -12.57786 -12.31796 -12.22694 -12.15463 -11.96960 -11.95100 -11.85383 -11.31752 -11.09896 -10.88247 -10.78936 -9.95997 -9.78933 -8.95146 -4.85740 0.13794 1.07702 1.11717 1.28370 1.51579 1.66379 1.66677 1.89829 1.91403 2.35941 2.55314 2.91614 3.32623 3.38139 3.55397 3.64408 3.71149 3.80440 3.87995 3.90740 4.07897 4.24530 4.32156 4.45512 4.46270 4.51254 4.57660 4.64844 4.66773 4.79204 4.81136 4.85168 4.91086 5.00046 5.11326 5.17037 5.26415 5.29960 5.36072 5.63212 5.67172 5.99639 6.14067 6.43272 6.60189 6.70187 7.22720 7.34090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.551 6.551 2 C -0.060 4.060 3 Si 0.789 3.211 4 C -0.019 4.019 5 C -0.202 4.202 6 C -0.203 4.203 7 C 0.035 3.965 8 C -0.068 4.068 9 C 0.510 3.490 10 O -0.579 6.579 11 N -0.706 5.706 12 C 0.116 3.884 13 H 0.084 0.916 14 C -0.116 4.116 15 C -0.098 4.098 16 H 0.082 0.918 17 C -0.010 4.010 18 C 0.171 3.829 19 N -0.310 5.310 20 N -0.211 5.211 21 N -0.071 5.071 22 N -0.303 5.303 23 C -0.144 4.144 24 N -0.537 5.537 25 H 0.388 0.612 26 H 0.118 0.882 27 H -0.281 1.281 28 H -0.296 1.296 29 H 0.151 0.849 30 H 0.139 0.861 31 H 0.143 0.857 32 H 0.129 0.871 33 H 0.420 0.580 34 H 0.084 0.916 35 H 0.120 0.880 36 H 0.117 0.883 37 H 0.115 0.885 38 H 0.490 0.510 39 H 0.102 0.898 40 H 0.043 0.957 41 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.099 -6.194 -2.495 7.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.359 6.359 2 C -0.169 4.169 3 Si 0.692 3.308 4 C -0.132 4.132 5 C -0.227 4.227 6 C -0.227 4.227 7 C -0.079 4.079 8 C -0.108 4.108 9 C 0.297 3.703 10 O -0.458 6.458 11 N -0.358 5.358 12 C 0.011 3.989 13 H 0.103 0.897 14 C -0.154 4.154 15 C -0.118 4.118 16 H 0.101 0.899 17 C -0.050 4.050 18 C -0.112 4.112 19 N -0.162 5.162 20 N -0.061 5.061 21 N -0.066 5.066 22 N -0.175 5.175 23 C -0.183 4.183 24 N -0.132 5.132 25 H 0.237 0.763 26 H 0.136 0.864 27 H -0.207 1.207 28 H -0.224 1.224 29 H 0.168 0.832 30 H 0.157 0.843 31 H 0.160 0.840 32 H 0.147 0.853 33 H 0.258 0.742 34 H 0.102 0.898 35 H 0.138 0.862 36 H 0.135 0.865 37 H 0.133 0.867 38 H 0.347 0.653 39 H 0.120 0.880 40 H 0.062 0.938 41 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -1.243 -5.266 -1.637 5.653 hybrid contribution -0.855 -0.882 -0.113 1.234 sum -2.099 -6.148 -1.750 6.728 Atomic orbital electron populations 1.86540 1.18472 1.80579 1.50356 1.24934 0.83349 1.12172 0.96423 0.93256 0.90597 0.70331 0.76616 1.20897 1.06206 0.86024 1.00115 1.20905 1.04756 1.00800 0.96222 1.20848 1.05898 0.93447 1.02504 1.19949 1.01657 0.96766 0.89574 1.20262 0.97194 0.90171 1.03137 1.21046 0.87467 0.81996 0.79828 1.90752 1.47545 1.70819 1.36726 1.45848 1.25873 1.16237 1.47818 1.22397 0.86301 0.91970 0.98252 0.89738 1.23320 0.95953 0.92949 1.03184 1.22253 0.98464 0.94163 0.96923 0.89918 1.20178 0.82372 1.03152 0.99301 1.26298 1.00629 0.90296 0.93932 1.74705 0.93148 1.25717 1.22663 1.47896 1.11350 1.21549 1.25343 1.78947 1.13473 1.02659 1.11508 1.75891 0.97835 1.24114 1.19664 1.23584 0.98476 0.96051 1.00148 1.41871 1.40940 1.11069 1.19338 0.76286 0.86384 1.20699 1.22357 0.83198 0.84276 0.83961 0.85289 0.74191 0.89762 0.86209 0.86472 0.86694 0.65252 0.87984 0.93842 0.74350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.90 12.88 -148.98 -1.92 -3.82 16 2 C -0.06 -0.12 3.08 71.24 0.22 0.10 16 3 Si 0.79 0.37 30.58 68.60 2.10 2.47 16 4 C -0.02 -0.08 6.51 41.08 0.27 0.19 16 5 C -0.20 -1.08 9.37 22.14 0.21 -0.87 16 6 C -0.20 -1.18 10.76 22.14 0.24 -0.94 16 7 C 0.03 0.10 5.66 41.08 0.23 0.33 16 8 C -0.07 0.32 6.24 29.10 0.18 0.50 16 9 C 0.51 0.61 7.82 87.66 0.69 1.29 16 10 O -0.58 -7.26 15.65 -3.04 -0.05 -7.31 16 11 N -0.71 3.72 5.36 -440.04 -2.36 1.36 16 12 C 0.12 -0.32 4.21 45.52 0.19 -0.13 16 13 H 0.08 0.31 7.50 -2.39 -0.02 0.29 16 14 C -0.12 1.04 7.39 31.12 0.23 1.27 16 15 C -0.10 0.51 3.64 -10.21 -0.04 0.47 16 16 H 0.08 -0.18 8.12 -2.39 -0.02 -0.20 16 17 C -0.01 0.06 5.68 29.85 0.17 0.23 16 18 C 0.17 0.28 7.61 138.55 1.05 1.33 16 19 N -0.31 -0.42 12.36 -51.20 -0.63 -1.06 16 20 N -0.21 0.23 7.91 37.00 0.29 0.52 16 21 N -0.07 -0.34 13.48 37.02 0.50 0.15 16 22 N -0.30 -1.90 12.50 -51.26 -0.64 -2.54 16 23 C -0.14 0.29 7.44 31.18 0.23 0.53 16 24 N -0.54 -1.54 6.07 -171.12 -1.04 -2.58 16 25 H 0.39 -0.71 8.70 -74.06 -0.64 -1.36 16 26 H 0.12 0.12 7.96 -2.39 -0.02 0.10 16 27 H -0.28 -1.24 7.11 99.48 0.71 -0.53 16 28 H -0.30 -2.00 7.11 99.48 0.71 -1.30 16 29 H 0.15 0.30 6.22 -2.91 -0.02 0.29 16 30 H 0.14 0.56 8.06 -2.91 -0.02 0.54 16 31 H 0.14 -1.39 8.14 -2.38 -0.02 -1.41 16 32 H 0.13 -1.38 8.14 -2.39 -0.02 -1.40 16 33 H 0.42 -5.39 8.71 -92.71 -0.81 -6.20 16 34 H 0.08 -0.75 8.14 -2.39 -0.02 -0.77 16 35 H 0.12 -1.68 8.07 -2.39 -0.02 -1.70 16 36 H 0.12 -1.10 8.14 -2.39 -0.02 -1.12 16 37 H 0.11 -1.00 7.85 -2.38 -0.02 -1.01 16 38 H 0.49 -4.78 8.96 -347.68 -3.12 -7.90 16 39 H 0.10 -0.43 7.90 -2.39 -0.02 -0.45 16 40 H 0.04 0.17 8.14 -2.39 -0.02 0.15 16 41 H 0.42 -0.28 8.96 -92.70 -0.83 -1.11 16 Total: 0.00 -29.48 354.17 -4.11 -33.59 By element: Atomic # 1 Polarization: -20.86 SS G_CDS: -4.24 Total: -25.10 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: 3.87 Total: 4.31 kcal Atomic # 7 Polarization: -0.26 SS G_CDS: -3.88 Total: -4.14 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: -1.97 Total: -11.12 kcal Atomic # 14 Polarization: 0.37 SS G_CDS: 2.10 Total: 2.47 kcal Total: -29.48 -4.11 -33.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_280130_17857876_17907336.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.570 kcal (2) G-P(sol) polarization free energy of solvation -29.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds