Wall clock time and date at job start Sat Mar 6 2021 06:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86301 * 109.46931 * 2 1 4 4 C 1.50700 * 109.47033 * 240.00308 * 2 1 3 5 5 C 1.36457 * 120.29077 * 240.00062 * 4 2 1 6 6 C 1.40088 * 119.25055 * 179.97438 * 5 4 2 7 7 C 1.40856 * 132.85991 * 180.02562 * 6 5 4 8 8 C 1.46569 * 126.58107 * 359.97438 * 7 6 5 9 9 O 1.21714 * 120.00017 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99699 * 179.97438 * 8 7 6 11 11 C 1.46499 * 119.99746 * 179.97438 * 10 8 7 12 12 H 1.09000 * 112.84966 * 25.33440 * 11 10 8 13 13 C 1.53778 * 113.61605 * 156.52965 * 11 10 8 14 14 C 1.53778 * 87.08407 * 139.98009 * 13 11 10 15 15 H 1.08998 * 113.61055 * 89.20138 * 14 13 11 16 16 C 1.52994 * 113.61901 * 220.02145 * 14 13 11 17 17 C 1.50697 * 109.47248 * 185.00032 * 16 14 13 18 18 N 1.31047 * 126.54671 * 90.00341 * 17 16 14 19 19 N 1.28885 * 107.91099 * 180.02562 * 18 17 16 20 20 N 1.28775 * 109.10466 * 359.97438 * 19 18 17 21 21 N 1.29002 * 108.72740 * 359.72929 * 20 19 18 22 22 C 1.53775 * 113.61564 * 254.14007 * 11 10 8 23 23 C 1.40551 * 106.83791 * 179.97438 * 7 6 5 24 24 N 1.30739 * 108.74794 * 0.02562 * 23 7 6 25 25 N 1.36574 * 120.23620 * 359.97438 * 6 5 4 26 26 C 1.36242 * 120.07615 * 359.75258 * 25 6 5 27 27 C 1.35186 * 120.70663 * 0.50188 * 26 25 6 28 28 H 0.96700 * 113.99998 * 60.00012 * 1 2 3 29 29 H 1.08996 * 109.47235 * 119.99738 * 2 1 3 30 30 H 1.48501 * 109.99876 * 298.68002 * 3 2 1 31 31 H 1.48495 * 110.00184 * 59.99903 * 3 2 1 32 32 H 1.08004 * 120.37089 * 359.95160 * 5 4 2 33 33 H 0.97000 * 119.99912 * 0.02562 * 10 8 7 34 34 H 1.08999 * 113.61580 * 254.53261 * 13 11 10 35 35 H 1.09003 * 113.61403 * 25.43178 * 13 11 10 36 36 H 1.09003 * 109.46864 * 305.00191 * 16 14 13 37 37 H 1.08995 * 109.47060 * 64.99671 * 16 14 13 38 38 H 0.97001 * 125.44279 * 179.97438 * 19 18 17 39 39 H 1.09001 * 113.61331 * 334.56710 * 22 11 10 40 40 H 1.09003 * 113.61830 * 105.47076 * 22 11 10 41 41 H 1.08002 * 125.62925 * 179.97438 * 23 7 6 42 42 H 1.08003 * 119.64917 * 180.24985 * 26 25 6 43 43 H 1.08008 * 119.84373 * 179.72723 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 -1.2305 5 6 2.7162 -1.8203 -1.1123 6 6 3.1706 -2.4639 -2.2706 7 6 3.9741 -3.6013 -2.4822 8 6 4.5750 -4.4506 -1.4498 9 8 4.3968 -4.1963 -0.2729 10 7 5.3248 -5.5132 -1.8037 11 6 5.9259 -6.3617 -0.7718 12 1 5.3803 -6.3320 0.1714 13 6 6.2444 -7.7866 -1.2544 14 6 7.5478 -7.6851 -0.4447 15 1 7.4472 -8.0185 0.5881 16 6 8.7580 -8.2984 -1.1518 17 6 9.9507 -8.2590 -0.2315 18 7 10.3085 -9.1864 0.6224 19 7 11.3765 -8.7834 1.2209 20 7 11.7027 -7.6238 0.7656 21 7 10.8468 -7.2766 -0.1349 22 6 7.4418 -6.1584 -0.6130 23 6 4.0891 -3.7655 -3.8733 24 7 3.4167 -2.8136 -4.4658 25 7 2.8298 -1.9837 -3.5029 26 6 2.0411 -0.8780 -3.6106 27 6 1.5953 -0.2378 -2.5065 28 1 -0.3933 0.4417 -0.7650 29 1 1.7924 -0.5138 0.8900 30 1 1.5878 2.4585 -1.2243 31 1 1.5614 2.4679 1.2084 32 1 2.9843 -2.1982 -0.1366 33 1 5.4671 -5.7155 -2.7416 34 1 5.5534 -8.5403 -0.8769 35 1 6.4033 -7.8578 -2.3305 36 1 8.5381 -9.3325 -1.4174 37 1 8.9774 -7.7300 -2.0555 38 1 11.8575 -9.2750 1.9050 39 1 7.9287 -5.7836 -1.5133 40 1 7.7162 -5.5995 0.2817 41 1 4.6423 -4.5483 -4.3709 42 1 1.7725 -0.5065 -4.5885 43 1 0.9744 0.6401 -2.6081 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_280130_17857876_17938718.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 06:03:19 Heat of formation + Delta-G solvation = 189.541090 kcal Electronic energy + Delta-G solvation = -29902.643004 eV Core-core repulsion = 25569.445905 eV Total energy + Delta-G solvation = -4333.197099 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 356.138 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -45.38479 -43.28383 -40.96287 -39.56971 -39.04580 -37.32854 -35.55007 -34.85156 -34.25215 -33.90566 -32.09823 -30.78927 -29.89882 -27.33776 -26.73311 -25.51889 -25.37082 -24.66201 -23.59644 -23.08949 -22.31680 -21.28462 -20.56381 -20.08323 -19.00659 -18.63195 -18.06761 -17.94120 -17.47312 -17.10878 -16.93283 -16.50568 -16.38850 -15.93443 -15.79334 -15.52839 -15.43511 -15.08100 -14.79002 -14.73803 -14.30299 -14.20270 -13.84037 -13.63698 -13.52596 -13.42600 -13.25850 -13.21575 -12.67512 -12.45938 -12.22223 -12.20032 -12.06813 -11.97212 -11.92492 -11.88855 -11.54897 -11.37607 -11.06823 -10.90111 -10.67873 -10.35738 -9.90341 -8.74897 -5.04716 -0.54666 -0.14924 0.21931 1.00484 1.08730 1.13174 1.16229 1.40498 1.48629 1.81307 2.07250 2.33322 2.62432 2.88582 3.06802 3.15280 3.28414 3.31324 3.43075 3.49452 3.58448 3.63898 3.80225 3.85752 3.87200 3.99811 4.12863 4.23278 4.26247 4.33155 4.44339 4.51370 4.56155 4.63886 4.68832 4.71445 4.73119 4.80457 4.90650 5.05611 5.08337 5.10940 5.17276 5.26282 5.34489 5.49888 5.64564 5.67767 6.22146 6.32525 6.67433 7.31214 7.45156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.521 6.521 2 C -0.075 4.075 3 Si 0.696 3.304 4 C -0.066 4.066 5 C -0.089 4.089 6 C 0.169 3.831 7 C -0.315 4.315 8 C 0.602 3.398 9 O -0.549 6.549 10 N -0.718 5.718 11 C 0.127 3.873 12 H 0.116 0.884 13 C -0.137 4.137 14 C -0.104 4.104 15 H 0.096 0.904 16 C -0.012 4.012 17 C 0.177 3.823 18 N -0.301 5.301 19 N -0.231 5.231 20 N -0.051 5.051 21 N -0.273 5.273 22 C -0.144 4.144 23 C 0.120 3.880 24 N -0.313 5.313 25 N -0.267 5.267 26 C 0.123 3.877 27 C -0.162 4.162 28 H 0.375 0.625 29 H 0.126 0.874 30 H -0.253 1.253 31 H -0.248 1.248 32 H 0.165 0.835 33 H 0.399 0.601 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.475 0.525 39 H 0.091 0.909 40 H 0.072 0.928 41 H 0.199 0.801 42 H 0.177 0.823 43 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.840 -1.037 -2.121 2.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.328 6.328 2 C -0.184 4.184 3 Si 0.594 3.406 4 C -0.072 4.072 5 C -0.109 4.109 6 C 0.048 3.952 7 C -0.330 4.330 8 C 0.391 3.609 9 O -0.428 6.428 10 N -0.369 5.369 11 C 0.022 3.978 12 H 0.133 0.867 13 C -0.176 4.176 14 C -0.124 4.124 15 H 0.115 0.885 16 C -0.053 4.053 17 C -0.106 4.106 18 N -0.153 5.153 19 N -0.077 5.077 20 N -0.046 5.046 21 N -0.146 5.146 22 C -0.183 4.183 23 C -0.061 4.061 24 N -0.134 5.134 25 N -0.031 5.031 26 C -0.003 4.003 27 C -0.184 4.184 28 H 0.223 0.777 29 H 0.144 0.856 30 H -0.177 1.177 31 H -0.171 1.171 32 H 0.183 0.817 33 H 0.233 0.767 34 H 0.099 0.901 35 H 0.110 0.890 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.329 0.671 39 H 0.110 0.890 40 H 0.091 0.909 41 H 0.215 0.785 42 H 0.194 0.806 43 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 0.801 0.355 -1.739 1.947 hybrid contribution -0.680 -1.245 -0.108 1.422 sum 0.122 -0.890 -1.846 2.053 Atomic orbital electron populations 1.86708 1.16880 1.80027 1.49146 1.25076 0.84294 1.11355 0.97702 0.94384 0.91692 0.73246 0.81259 1.20409 0.96212 0.95078 0.95525 1.20703 0.97924 0.94079 0.98189 1.19300 0.95614 0.94104 0.86160 1.19646 1.16083 1.03637 0.93591 1.16852 0.77159 0.79590 0.87266 1.90781 1.61686 1.71728 1.18575 1.45663 1.52617 1.28827 1.09752 1.22448 0.93161 0.89244 0.92954 0.86656 1.23393 0.96587 0.96682 1.00909 1.22367 0.93271 0.96583 1.00217 0.88527 1.19998 0.86576 1.03864 0.94828 1.25710 0.99413 0.87385 0.98110 1.74728 1.02703 1.26697 1.11176 1.47833 1.17356 1.13191 1.29276 1.79010 1.20013 0.98513 1.07111 1.75920 1.02164 1.24409 1.12127 1.23604 0.96085 0.95291 1.03324 1.24071 0.94311 0.95705 0.91990 1.77640 1.18577 1.06394 1.10755 1.46076 1.32032 1.19120 1.05871 1.21509 0.91861 0.85203 1.01727 1.20700 1.04416 1.02540 0.90714 0.77725 0.85577 1.17682 1.17143 0.81733 0.76689 0.90144 0.88983 0.88313 0.88135 0.67117 0.89041 0.90907 0.78450 0.80589 0.82629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.52 -0.02 12.88 -35.23 -0.45 -0.47 16 2 C -0.08 0.09 2.84 36.01 0.10 0.20 16 3 Si 0.70 -1.47 31.97 -169.99 -5.44 -6.91 16 4 C -0.07 0.04 4.53 -104.55 -0.47 -0.43 16 5 C -0.09 -0.13 9.35 -39.53 -0.37 -0.50 16 6 C 0.17 0.44 6.76 -84.07 -0.57 -0.12 16 7 C -0.31 -0.69 6.17 -104.68 -0.65 -1.34 16 8 C 0.60 1.64 7.78 -12.90 -0.10 1.54 16 9 O -0.55 -3.29 15.32 5.18 0.08 -3.21 16 10 N -0.72 0.50 5.35 -54.36 -0.29 0.21 16 11 C 0.13 -0.11 4.21 -67.12 -0.28 -0.39 16 12 H 0.12 0.13 7.50 -51.93 -0.39 -0.26 16 13 C -0.14 0.44 7.39 -25.92 -0.19 0.25 16 14 C -0.10 0.22 3.64 -89.72 -0.33 -0.10 16 15 H 0.10 -0.12 8.12 -51.93 -0.42 -0.55 16 16 C -0.01 0.03 5.68 -27.89 -0.16 -0.13 16 17 C 0.18 0.19 7.61 -156.62 -1.19 -1.00 16 18 N -0.30 -0.27 12.36 32.46 0.40 0.13 16 19 N -0.23 0.11 7.91 60.34 0.48 0.59 16 20 N -0.05 -0.12 13.48 60.35 0.81 0.70 16 21 N -0.27 -0.84 12.50 32.45 0.41 -0.43 16 22 C -0.14 0.13 7.45 -25.83 -0.19 -0.06 16 23 C 0.12 0.05 11.44 -17.15 -0.20 -0.15 16 24 N -0.31 -0.75 12.57 30.75 0.39 -0.37 16 25 N -0.27 -0.51 3.86 -10.55 -0.04 -0.55 16 26 C 0.12 -0.12 11.17 -16.68 -0.19 -0.30 16 27 C -0.16 0.33 8.38 -39.95 -0.33 0.00 16 28 H 0.37 -1.34 8.08 45.56 0.37 -0.97 16 29 H 0.13 -0.20 7.71 -51.93 -0.40 -0.60 16 30 H -0.25 0.27 7.05 56.52 0.40 0.67 16 31 H -0.25 -0.28 7.11 56.52 0.40 0.13 16 32 H 0.17 0.29 7.01 -52.48 -0.37 -0.08 16 33 H 0.40 -1.44 7.63 -40.82 -0.31 -1.75 16 34 H 0.08 -0.26 8.14 -51.93 -0.42 -0.68 16 35 H 0.09 -0.44 8.07 -51.93 -0.42 -0.86 16 36 H 0.10 -0.33 8.14 -51.93 -0.42 -0.75 16 37 H 0.10 -0.31 7.85 -51.93 -0.41 -0.71 16 38 H 0.47 -2.27 8.96 -340.53 -3.05 -5.32 16 39 H 0.09 -0.12 7.90 -51.93 -0.41 -0.53 16 40 H 0.07 0.07 8.14 -51.93 -0.42 -0.35 16 41 H 0.20 -0.79 7.46 -52.49 -0.39 -1.18 16 42 H 0.18 -0.65 8.06 -52.48 -0.42 -1.07 16 43 H 0.16 -0.75 7.26 -52.48 -0.38 -1.13 16 LS Contribution 372.81 15.07 5.62 5.62 Total: 0.00 -12.63 372.81 -10.63 -23.26 By element: Atomic # 1 Polarization: -8.53 SS G_CDS: -7.48 Total: -16.01 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: -5.12 Total: -2.56 kcal Atomic # 7 Polarization: -1.88 SS G_CDS: 2.15 Total: 0.28 kcal Atomic # 8 Polarization: -3.31 SS G_CDS: -0.37 Total: -3.68 kcal Atomic # 14 Polarization: -1.47 SS G_CDS: -5.44 Total: -6.91 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -12.63 -10.63 -23.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_280130_17857876_17938718.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 212.804 kcal (2) G-P(sol) polarization free energy of solvation -12.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 200.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 189.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds