Wall clock time and date at job start Sat Mar 6 2021 06:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86301 * 109.46931 * 2 1 4 4 C 1.50700 * 109.47033 * 240.00308 * 2 1 3 5 5 C 1.36457 * 120.29077 * 240.00062 * 4 2 1 6 6 C 1.40088 * 119.25055 * 179.97438 * 5 4 2 7 7 C 1.40856 * 132.85991 * 180.02562 * 6 5 4 8 8 C 1.46569 * 126.58107 * 359.97438 * 7 6 5 9 9 O 1.21714 * 120.00017 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99699 * 179.97438 * 8 7 6 11 11 C 1.46499 * 119.99746 * 179.97438 * 10 8 7 12 12 H 1.09000 * 112.84966 * 25.33440 * 11 10 8 13 13 C 1.53778 * 113.61605 * 156.52965 * 11 10 8 14 14 C 1.53778 * 87.08407 * 139.98009 * 13 11 10 15 15 H 1.08998 * 113.61055 * 89.20138 * 14 13 11 16 16 C 1.52994 * 113.61901 * 220.02145 * 14 13 11 17 17 C 1.50697 * 109.47248 * 185.00032 * 16 14 13 18 18 N 1.31047 * 126.54671 * 90.00341 * 17 16 14 19 19 N 1.28885 * 107.91099 * 180.02562 * 18 17 16 20 20 N 1.28775 * 109.10466 * 359.97438 * 19 18 17 21 21 N 1.29002 * 108.72740 * 359.72929 * 20 19 18 22 22 C 1.53775 * 113.61564 * 254.14007 * 11 10 8 23 23 C 1.40551 * 106.83791 * 179.97438 * 7 6 5 24 24 N 1.30739 * 108.74794 * 0.02562 * 23 7 6 25 25 N 1.36574 * 120.23620 * 359.97438 * 6 5 4 26 26 C 1.36242 * 120.07615 * 359.75258 * 25 6 5 27 27 C 1.35186 * 120.70663 * 0.50188 * 26 25 6 28 28 H 0.96700 * 113.99998 * 60.00012 * 1 2 3 29 29 H 1.08996 * 109.47235 * 119.99738 * 2 1 3 30 30 H 1.48501 * 109.99876 * 298.68002 * 3 2 1 31 31 H 1.48495 * 110.00184 * 59.99903 * 3 2 1 32 32 H 1.08004 * 120.37089 * 359.95160 * 5 4 2 33 33 H 0.97000 * 119.99912 * 0.02562 * 10 8 7 34 34 H 1.08999 * 113.61580 * 254.53261 * 13 11 10 35 35 H 1.09003 * 113.61403 * 25.43178 * 13 11 10 36 36 H 1.09003 * 109.46864 * 305.00191 * 16 14 13 37 37 H 1.08995 * 109.47060 * 64.99671 * 16 14 13 38 38 H 0.97001 * 125.44279 * 179.97438 * 19 18 17 39 39 H 1.09001 * 113.61331 * 334.56710 * 22 11 10 40 40 H 1.09003 * 113.61830 * 105.47076 * 22 11 10 41 41 H 1.08002 * 125.62925 * 179.97438 * 23 7 6 42 42 H 1.08003 * 119.64917 * 180.24985 * 26 25 6 43 43 H 1.08008 * 119.84373 * 179.72723 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 -1.2305 5 6 2.7162 -1.8203 -1.1123 6 6 3.1706 -2.4639 -2.2706 7 6 3.9741 -3.6013 -2.4822 8 6 4.5750 -4.4506 -1.4498 9 8 4.3968 -4.1963 -0.2729 10 7 5.3248 -5.5132 -1.8037 11 6 5.9259 -6.3617 -0.7718 12 1 5.3803 -6.3320 0.1714 13 6 6.2444 -7.7866 -1.2544 14 6 7.5478 -7.6851 -0.4447 15 1 7.4472 -8.0185 0.5881 16 6 8.7580 -8.2984 -1.1518 17 6 9.9507 -8.2590 -0.2315 18 7 10.3085 -9.1864 0.6224 19 7 11.3765 -8.7834 1.2209 20 7 11.7027 -7.6238 0.7656 21 7 10.8468 -7.2766 -0.1349 22 6 7.4418 -6.1584 -0.6130 23 6 4.0891 -3.7655 -3.8733 24 7 3.4167 -2.8136 -4.4658 25 7 2.8298 -1.9837 -3.5029 26 6 2.0411 -0.8780 -3.6106 27 6 1.5953 -0.2378 -2.5065 28 1 -0.3933 0.4417 -0.7650 29 1 1.7924 -0.5138 0.8900 30 1 1.5878 2.4585 -1.2243 31 1 1.5614 2.4679 1.2084 32 1 2.9843 -2.1982 -0.1366 33 1 5.4671 -5.7155 -2.7416 34 1 5.5534 -8.5403 -0.8769 35 1 6.4033 -7.8578 -2.3305 36 1 8.5381 -9.3325 -1.4174 37 1 8.9774 -7.7300 -2.0555 38 1 11.8575 -9.2750 1.9050 39 1 7.9287 -5.7836 -1.5133 40 1 7.7162 -5.5995 0.2817 41 1 4.6423 -4.5483 -4.3709 42 1 1.7725 -0.5065 -4.5885 43 1 0.9744 0.6401 -2.6081 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_280130_17857876_17938718.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 06:03:18 Heat of formation + Delta-G solvation = 184.350512 kcal Electronic energy + Delta-G solvation = -29902.868085 eV Core-core repulsion = 25569.445905 eV Total energy + Delta-G solvation = -4333.422180 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 356.138 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -45.43479 -43.29459 -40.96589 -39.54451 -39.10971 -37.30559 -35.58159 -34.92111 -34.28997 -33.93012 -32.09853 -30.76502 -29.85037 -27.33377 -26.60603 -25.56743 -25.39842 -24.62563 -23.63416 -23.06497 -22.29260 -21.34535 -20.48047 -20.09660 -19.02217 -18.59293 -18.07987 -17.91674 -17.46810 -17.11726 -16.96987 -16.45484 -16.32376 -15.91170 -15.75882 -15.57563 -15.45163 -15.12684 -14.82442 -14.66298 -14.26645 -14.16729 -13.81701 -13.52353 -13.47310 -13.31049 -13.23063 -13.22022 -12.61235 -12.44691 -12.29628 -12.20136 -12.08508 -11.94473 -11.91360 -11.87383 -11.58361 -11.27792 -11.06462 -10.88841 -10.83471 -10.31444 -9.95494 -8.77421 -4.88916 -0.55104 -0.12530 0.15719 1.04229 1.06142 1.10455 1.21463 1.53509 1.59683 1.89264 2.09288 2.33328 2.52213 2.93756 3.10745 3.24910 3.35154 3.37746 3.55011 3.59804 3.68452 3.72739 3.88096 3.92488 3.95425 4.01833 4.20284 4.33705 4.36820 4.39825 4.52782 4.58892 4.59791 4.69432 4.78433 4.83076 4.89196 4.95392 5.03830 5.11210 5.14957 5.17524 5.21287 5.30270 5.40744 5.65169 5.66658 5.71971 6.31131 6.46355 6.69641 7.24796 7.37494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.542 6.542 2 C -0.085 4.085 3 Si 0.767 3.233 4 C -0.052 4.052 5 C -0.116 4.116 6 C 0.151 3.849 7 C -0.340 4.340 8 C 0.597 3.403 9 O -0.594 6.594 10 N -0.702 5.702 11 C 0.119 3.881 12 H 0.089 0.911 13 C -0.117 4.117 14 C -0.096 4.096 15 H 0.085 0.915 16 C -0.010 4.010 17 C 0.172 3.828 18 N -0.310 5.310 19 N -0.212 5.212 20 N -0.071 5.071 21 N -0.303 5.303 22 C -0.144 4.144 23 C 0.132 3.868 24 N -0.340 5.340 25 N -0.274 5.274 26 C 0.118 3.882 27 C -0.158 4.158 28 H 0.390 0.610 29 H 0.122 0.878 30 H -0.253 1.253 31 H -0.294 1.294 32 H 0.150 0.850 33 H 0.415 0.585 34 H 0.085 0.915 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.114 0.886 38 H 0.490 0.510 39 H 0.100 0.900 40 H 0.045 0.955 41 H 0.237 0.763 42 H 0.205 0.795 43 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.561 -1.321 -4.211 4.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.350 6.350 2 C -0.192 4.192 3 Si 0.667 3.333 4 C -0.057 4.057 5 C -0.136 4.136 6 C 0.029 3.971 7 C -0.354 4.354 8 C 0.387 3.613 9 O -0.477 6.477 10 N -0.352 5.352 11 C 0.014 3.986 12 H 0.107 0.893 13 C -0.155 4.155 14 C -0.116 4.116 15 H 0.103 0.897 16 C -0.051 4.051 17 C -0.110 4.110 18 N -0.162 5.162 19 N -0.061 5.061 20 N -0.066 5.066 21 N -0.175 5.175 22 C -0.182 4.182 23 C -0.048 4.048 24 N -0.160 5.160 25 N -0.038 5.038 26 C -0.008 4.008 27 C -0.179 4.179 28 H 0.241 0.759 29 H 0.140 0.860 30 H -0.177 1.177 31 H -0.221 1.221 32 H 0.167 0.833 33 H 0.253 0.747 34 H 0.104 0.896 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.133 0.867 38 H 0.347 0.653 39 H 0.118 0.882 40 H 0.064 0.936 41 H 0.253 0.747 42 H 0.222 0.778 43 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 0.548 0.032 -3.878 3.917 hybrid contribution -0.639 -1.120 0.641 1.440 sum -0.091 -1.088 -3.237 3.416 Atomic orbital electron populations 1.86679 1.17369 1.80631 1.50351 1.25289 0.84016 1.12487 0.97404 0.93415 0.90731 0.70567 0.78543 1.20557 0.94700 0.93928 0.96563 1.20652 0.99907 0.95516 0.97525 1.19563 0.96027 0.94661 0.86811 1.19740 1.17193 1.04147 0.94347 1.17080 0.77253 0.80153 0.86795 1.90750 1.63547 1.73042 1.20334 1.45535 1.51324 1.27646 1.10741 1.22444 0.92731 0.91114 0.92343 0.89301 1.23338 0.95411 0.94499 1.02250 1.22245 0.94112 0.95262 1.00016 0.89692 1.20179 0.85102 1.05234 0.94537 1.26286 0.99769 0.86754 0.98236 1.74715 1.03091 1.26962 1.11450 1.47894 1.16848 1.12526 1.28876 1.78945 1.20485 0.99516 1.07668 1.75894 1.03073 1.25576 1.12993 1.23595 0.95975 0.96186 1.02490 1.24638 0.93341 0.95716 0.91127 1.77568 1.19692 1.07276 1.11491 1.46304 1.32384 1.19729 1.05402 1.22181 0.90899 0.84297 1.03421 1.21085 1.04064 1.03170 0.89540 0.75943 0.86032 1.17683 1.22060 0.83261 0.74722 0.89604 0.86284 0.86424 0.86748 0.65267 0.88166 0.93584 0.74694 0.77779 0.79293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.09 12.88 -148.98 -1.92 -2.01 16 2 C -0.08 0.16 2.84 71.24 0.20 0.36 16 3 Si 0.77 -3.38 31.97 68.60 2.19 -1.18 16 4 C -0.05 0.04 4.53 -19.82 -0.09 -0.05 16 5 C -0.12 -0.58 9.35 22.30 0.21 -0.37 16 6 C 0.15 1.02 6.76 39.49 0.27 1.29 16 7 C -0.34 -1.94 6.17 -19.90 -0.12 -2.06 16 8 C 0.60 4.42 7.78 86.42 0.67 5.09 16 9 O -0.59 -9.18 15.32 -4.39 -0.07 -9.25 16 10 N -0.70 0.58 5.35 -444.10 -2.38 -1.80 16 11 C 0.12 -0.08 4.21 45.51 0.19 0.12 16 12 H 0.09 0.45 7.50 -2.39 -0.02 0.43 16 13 C -0.12 0.88 7.39 31.12 0.23 1.11 16 14 C -0.10 0.41 3.64 -10.21 -0.04 0.38 16 15 H 0.08 -0.14 8.12 -2.39 -0.02 -0.16 16 16 C -0.01 0.05 5.68 29.85 0.17 0.22 16 17 C 0.17 0.37 7.61 138.55 1.05 1.43 16 18 N -0.31 -0.56 12.36 -51.20 -0.63 -1.19 16 19 N -0.21 0.15 7.91 37.00 0.29 0.44 16 20 N -0.07 -0.37 13.48 37.02 0.50 0.12 16 21 N -0.30 -2.07 12.50 -51.26 -0.64 -2.71 16 22 C -0.14 0.11 7.45 31.18 0.23 0.34 16 23 C 0.13 0.07 11.44 85.42 0.98 1.05 16 24 N -0.34 -1.57 12.57 -56.62 -0.71 -2.28 16 25 N -0.27 -1.10 3.86 -187.28 -0.72 -1.83 16 26 C 0.12 -0.34 11.17 83.30 0.93 0.59 16 27 C -0.16 0.82 8.38 22.03 0.18 1.00 16 28 H 0.39 -3.14 8.08 -74.06 -0.60 -3.74 16 29 H 0.12 -0.16 7.71 -2.39 -0.02 -0.18 16 30 H -0.25 1.05 7.05 99.48 0.70 1.76 16 31 H -0.29 -1.02 7.11 99.48 0.71 -0.31 16 32 H 0.15 1.10 7.01 -2.91 -0.02 1.07 16 33 H 0.42 -3.39 7.63 -92.71 -0.71 -4.10 16 34 H 0.09 -0.65 8.14 -2.39 -0.02 -0.67 16 35 H 0.12 -1.48 8.07 -2.39 -0.02 -1.50 16 36 H 0.12 -1.02 8.14 -2.39 -0.02 -1.04 16 37 H 0.11 -0.88 7.85 -2.39 -0.02 -0.90 16 38 H 0.49 -4.62 8.96 -347.67 -3.12 -7.73 16 39 H 0.10 -0.25 7.90 -2.39 -0.02 -0.27 16 40 H 0.05 0.22 8.14 -2.39 -0.02 0.20 16 41 H 0.24 -2.27 7.46 -2.91 -0.02 -2.30 16 42 H 0.21 -1.92 8.06 -2.91 -0.02 -1.94 16 43 H 0.19 -2.34 7.26 -2.91 -0.02 -2.36 16 Total: 0.00 -32.65 372.81 -2.29 -34.93 By element: Atomic # 1 Polarization: -20.48 SS G_CDS: -3.27 Total: -23.75 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: 5.07 Total: 10.50 kcal Atomic # 7 Polarization: -4.94 SS G_CDS: -4.29 Total: -9.24 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: -1.99 Total: -11.26 kcal Atomic # 14 Polarization: -3.38 SS G_CDS: 2.19 Total: -1.18 kcal Total: -32.65 -2.29 -34.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_280130_17857876_17938718.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 219.281 kcal (2) G-P(sol) polarization free energy of solvation -32.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 186.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 184.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds