Wall clock time and date at job start Sat Mar 6 2021 06:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86310 * 109.46972 * 2 1 4 4 C 1.50694 * 109.47158 * 240.00105 * 2 1 3 5 5 C 1.32772 * 124.71503 * 300.31085 * 4 2 1 6 6 C 1.44423 * 113.08663 * 180.14560 * 5 4 2 7 7 C 1.47185 * 123.46046 * 179.80799 * 6 5 4 8 8 O 1.21643 * 120.00003 * 359.73236 * 7 6 5 9 9 N 1.34774 * 119.99935 * 179.72937 * 7 6 5 10 10 C 1.46500 * 119.99723 * 180.02562 * 9 7 6 11 11 H 1.08998 * 109.47822 * 324.99789 * 10 9 7 12 12 C 1.52999 * 109.47340 * 85.00275 * 10 9 7 13 13 C 1.53005 * 109.47191 * 180.02562 * 12 10 9 14 14 C 1.53005 * 109.46693 * 299.99503 * 13 12 10 15 15 H 1.08998 * 109.47241 * 299.99882 * 14 13 12 16 16 O 1.42904 * 109.46656 * 180.02562 * 14 13 12 17 17 C 1.35609 * 116.99893 * 90.00242 * 16 14 13 18 18 N 1.32143 * 119.76871 * 359.97438 * 17 16 14 19 19 C 1.31984 * 121.77226 * 180.02562 * 18 17 16 20 20 C 1.38141 * 121.09305 * 0.02562 * 19 18 17 21 21 C 1.38597 * 119.40716 * 359.97438 * 20 19 18 22 22 C 1.39485 * 118.38040 * 0.02562 * 21 20 19 23 23 C 1.48387 * 120.55739 * 180.02562 * 22 21 20 24 24 N 1.31842 * 126.68132 * 0.02562 * 23 22 21 25 25 N 1.28871 * 107.81640 * 180.02562 * 24 23 22 26 26 N 1.28738 * 109.32432 * 359.97438 * 25 24 23 27 27 N 1.28988 * 108.94536 * 359.72753 * 26 25 24 28 28 C 1.52999 * 109.46896 * 60.00316 * 14 13 12 29 29 C 1.52996 * 109.47332 * 299.99460 * 28 14 13 30 30 C 1.36006 * 113.07901 * 359.54104 * 6 5 4 31 31 S 1.70451 * 110.81503 * 0.24409 * 30 6 5 32 32 H 0.96701 * 114.00201 * 299.99996 * 1 2 3 33 33 H 1.09000 * 109.47172 * 119.99390 * 2 1 3 34 34 H 1.48500 * 109.99813 * 178.68300 * 3 2 1 35 35 H 1.48497 * 109.99562 * 300.00104 * 3 2 1 36 36 H 1.08009 * 123.45414 * 359.93449 * 5 4 2 37 37 H 0.96993 * 120.00189 * 359.97438 * 9 7 6 38 38 H 1.08995 * 109.47098 * 299.99408 * 12 10 9 39 39 H 1.08998 * 109.47529 * 59.99658 * 12 10 9 40 40 H 1.09003 * 109.47145 * 179.97438 * 13 12 10 41 41 H 1.08992 * 109.47531 * 59.99672 * 13 12 10 42 42 H 1.07994 * 119.45177 * 179.97438 * 19 18 17 43 43 H 1.08003 * 120.29532 * 179.97438 * 20 19 18 44 44 H 1.08006 * 120.80572 * 180.27730 * 21 20 19 45 45 H 0.96998 * 125.33993 * 179.97438 * 25 24 23 46 46 H 1.08998 * 109.47060 * 60.00354 * 28 14 13 47 47 H 1.09000 * 109.46552 * 179.97438 * 28 14 13 48 48 H 1.08994 * 109.47210 * 180.02562 * 29 28 14 49 49 H 1.08998 * 109.47044 * 300.00580 * 29 28 14 50 50 H 1.07999 * 124.59420 * 180.24680 * 30 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7566 0.0000 4 6 1.9313 -0.7104 -1.2304 5 6 1.6641 -1.9746 -1.5357 6 6 2.2769 -2.4002 -2.7723 7 6 2.1338 -3.7573 -3.3238 8 8 1.4752 -4.5893 -2.7290 9 7 2.7324 -4.0782 -4.4879 10 6 2.5895 -5.4288 -5.0372 11 1 2.5561 -6.1511 -4.2216 12 6 1.2950 -5.5152 -5.8482 13 6 1.1455 -6.9260 -6.4213 14 6 2.3376 -7.2368 -7.3287 15 1 2.3711 -6.5148 -8.1446 16 8 2.1976 -8.5542 -7.8644 17 6 1.5342 -8.6730 -9.0412 18 7 1.0531 -7.5949 -9.6349 19 6 0.4010 -7.6648 -10.7802 20 6 0.1927 -8.8767 -11.4098 21 6 0.6774 -10.0377 -10.8284 22 6 1.3631 -9.9368 -9.6179 23 6 1.9030 -11.1487 -8.9534 24 7 1.8135 -12.3906 -9.3870 25 7 2.4049 -13.1508 -8.5307 26 7 2.8667 -12.4303 -7.5689 27 7 2.5821 -11.1933 -7.7983 28 6 3.6320 -7.1503 -6.5177 29 6 3.7816 -5.7397 -5.9446 30 6 2.9950 -1.4166 -3.3777 31 16 2.9440 0.0210 -2.4633 32 1 -0.3934 0.4417 0.7650 33 1 1.7923 -0.5137 0.8900 34 1 3.5346 1.7704 0.0321 35 1 1.5614 2.4679 -1.2085 36 1 1.0539 -2.6195 -0.9206 37 1 3.2572 -3.4147 -4.9624 38 1 0.4458 -5.2943 -5.2018 39 1 1.3283 -4.7930 -6.6639 40 1 0.2230 -6.9877 -6.9988 41 1 1.1119 -7.6479 -5.6055 42 1 0.0233 -6.7597 -11.2323 43 1 -0.3431 -8.9190 -12.3466 44 1 0.5313 -10.9967 -11.3032 45 1 2.4890 -14.1146 -8.6000 46 1 3.5985 -7.8724 -5.7018 47 1 4.4812 -7.3722 -7.1640 48 1 4.7039 -5.6780 -5.3672 49 1 3.8151 -5.0177 -6.7605 50 1 3.5257 -1.5309 -4.3114 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_280130_17857882_17900784.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 06:36:32 Heat of formation + Delta-G solvation = 98.332666 kcal Electronic energy + Delta-G solvation = -37874.484986 eV Core-core repulsion = 32805.701239 eV Total energy + Delta-G solvation = -5068.783747 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 429.130 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -45.29209 -41.80985 -41.09594 -39.79212 -38.72216 -37.86091 -37.04933 -35.48715 -34.83710 -34.79664 -32.85768 -32.12286 -31.85768 -31.34337 -29.52004 -26.94318 -26.23845 -25.77414 -25.40092 -24.25481 -23.83783 -23.07297 -22.73343 -21.67664 -21.14324 -20.32033 -20.16020 -19.36647 -18.77599 -18.41821 -18.04207 -18.00529 -17.77266 -17.40896 -17.02202 -16.61963 -16.25584 -16.04312 -15.90451 -15.71539 -15.53181 -15.06692 -14.99043 -14.83428 -14.59715 -14.36126 -14.28331 -14.14353 -13.92662 -13.82344 -13.73086 -13.61162 -13.45770 -13.25606 -12.98346 -12.88018 -12.64018 -12.58240 -12.37862 -12.24334 -12.14511 -12.09177 -12.07994 -12.03089 -11.98486 -11.45316 -11.19454 -10.82974 -10.69009 -10.65649 -10.51299 -10.05828 -9.91643 -9.48396 -9.37364 -5.30443 -0.41704 -0.34332 0.22600 0.31310 0.37667 0.73163 0.93953 1.15261 1.36201 1.42270 1.51979 1.83362 1.91172 2.18174 2.42506 2.70284 2.74401 3.18954 3.28172 3.29777 3.58545 3.65633 3.67609 3.83659 3.84877 3.90763 4.01112 4.03627 4.13032 4.16754 4.22402 4.22637 4.28464 4.36124 4.37244 4.42760 4.46341 4.51885 4.61521 4.67895 4.74642 4.78946 4.88018 4.97341 5.02195 5.06876 5.07397 5.13742 5.19339 5.24191 5.27157 5.30764 5.42114 5.49870 5.53612 6.30236 6.50430 6.53066 6.75450 7.27424 7.30819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.542 6.542 2 C -0.034 4.034 3 Si 0.670 3.330 4 C -0.199 4.199 5 C -0.048 4.048 6 C -0.154 4.154 7 C 0.580 3.420 8 O -0.529 6.529 9 N -0.723 5.723 10 C 0.143 3.857 11 H 0.094 0.906 12 C -0.123 4.123 13 C -0.130 4.130 14 C 0.088 3.912 15 H 0.092 0.908 16 O -0.270 6.270 17 C 0.365 3.635 18 N -0.538 5.538 19 C 0.162 3.838 20 C -0.216 4.216 21 C -0.001 4.001 22 C -0.095 4.095 23 C 0.225 3.775 24 N -0.297 5.297 25 N -0.228 5.228 26 N -0.051 5.051 27 N -0.243 5.243 28 C -0.111 4.111 29 C -0.121 4.121 30 C -0.203 4.203 31 S 0.173 5.827 32 H 0.385 0.615 33 H 0.085 0.915 34 H -0.238 1.238 35 H -0.234 1.234 36 H 0.159 0.841 37 H 0.398 0.602 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.166 0.834 43 H 0.147 0.853 44 H 0.151 0.849 45 H 0.476 0.524 46 H 0.081 0.919 47 H 0.078 0.922 48 H 0.079 0.921 49 H 0.072 0.928 50 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.016 2.937 -2.295 3.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.349 6.349 2 C -0.147 4.147 3 Si 0.569 3.431 4 C -0.315 4.315 5 C -0.077 4.077 6 C -0.172 4.172 7 C 0.366 3.634 8 O -0.406 6.406 9 N -0.374 5.374 10 C 0.039 3.961 11 H 0.112 0.888 12 C -0.162 4.162 13 C -0.168 4.168 14 C 0.031 3.969 15 H 0.110 0.890 16 O -0.175 6.175 17 C 0.183 3.817 18 N -0.262 5.262 19 C 0.006 3.994 20 C -0.236 4.236 21 C -0.029 4.029 22 C -0.102 4.102 23 C -0.055 4.055 24 N -0.150 5.150 25 N -0.074 5.074 26 N -0.046 5.046 27 N -0.116 5.116 28 C -0.150 4.150 29 C -0.159 4.159 30 C -0.340 4.340 31 S 0.439 5.561 32 H 0.233 0.767 33 H 0.103 0.897 34 H -0.161 1.161 35 H -0.158 1.158 36 H 0.176 0.824 37 H 0.233 0.767 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.093 0.907 42 H 0.184 0.816 43 H 0.165 0.835 44 H 0.168 0.832 45 H 0.330 0.670 46 H 0.100 0.900 47 H 0.096 0.904 48 H 0.098 0.902 49 H 0.091 0.909 50 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 2.358 4.345 -1.944 5.312 hybrid contribution -0.727 -2.700 -1.179 3.035 sum 1.631 1.645 -3.122 3.888 Atomic orbital electron populations 1.86522 1.16754 1.81846 1.49788 1.23992 0.85939 1.09608 0.95184 0.94730 0.81922 0.78206 0.88257 1.23426 1.08222 0.97881 1.01949 1.21037 0.97647 0.94335 0.94711 1.20263 1.04233 0.94800 0.97932 1.17562 0.79043 0.86438 0.80386 1.90828 1.39811 1.50161 1.59772 1.45889 1.53698 1.14311 1.23495 1.21091 0.94829 0.83694 0.96461 0.88758 1.21844 0.98082 0.96641 0.99633 1.21893 0.98210 0.97118 0.99628 1.22495 0.95628 0.82592 0.96138 0.89032 1.86523 1.68092 1.31716 1.31129 1.19705 0.87908 0.88211 0.85868 1.67465 1.15586 1.30202 1.12946 1.22679 0.90135 0.98248 0.88369 1.21970 1.05587 0.92668 1.03367 1.21520 0.90172 1.00232 0.90929 1.17130 1.08383 0.86909 0.97752 1.23165 0.99335 0.90873 0.92145 1.74877 1.18903 1.02549 1.18635 1.47732 1.34424 1.13162 1.12067 1.79014 1.15737 0.97695 1.12202 1.76313 1.13369 1.08299 1.13612 1.21512 0.96280 0.96868 1.00297 1.21752 0.98049 0.96960 0.99160 1.25790 1.04658 0.98592 1.04999 1.83158 1.47456 1.12359 1.13148 0.76690 0.89733 1.16132 1.15770 0.82399 0.76739 0.90718 0.91335 0.90974 0.90725 0.81639 0.83543 0.83152 0.66983 0.90042 0.90357 0.90199 0.90944 0.81029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.18 12.82 -35.23 -0.45 -0.63 16 2 C -0.03 0.00 2.94 36.00 0.11 0.11 16 3 Si 0.67 -0.99 30.91 -169.99 -5.25 -6.24 16 4 C -0.20 -0.46 5.72 -36.18 -0.21 -0.67 16 5 C -0.05 -0.17 9.91 -39.02 -0.39 -0.56 16 6 C -0.15 -0.43 5.98 -104.63 -0.63 -1.06 16 7 C 0.58 2.22 7.76 -12.63 -0.10 2.12 16 8 O -0.53 -4.03 16.46 5.24 0.09 -3.94 16 9 N -0.72 -0.41 5.05 -54.95 -0.28 -0.68 16 10 C 0.14 0.10 2.45 -67.93 -0.17 -0.06 16 11 H 0.09 0.26 7.58 -51.93 -0.39 -0.13 16 12 C -0.12 -0.15 5.49 -26.73 -0.15 -0.29 16 13 C -0.13 -0.22 5.54 -26.73 -0.15 -0.37 16 14 C 0.09 0.13 2.38 -26.73 -0.06 0.06 16 15 H 0.09 0.13 6.98 -51.93 -0.36 -0.24 16 16 O -0.27 -0.97 8.14 -18.52 -0.15 -1.12 16 17 C 0.36 1.14 7.47 -16.77 -0.13 1.02 16 18 N -0.54 -1.02 8.64 -13.07 -0.11 -1.14 16 19 C 0.16 -0.10 11.17 -17.52 -0.20 -0.30 16 20 C -0.22 0.31 10.09 -39.48 -0.40 -0.09 16 21 C 0.00 0.00 9.83 -38.98 -0.38 -0.38 16 22 C -0.10 -0.25 5.90 -104.60 -0.62 -0.87 16 23 C 0.23 0.84 7.92 -156.29 -1.24 -0.40 16 24 N -0.30 -0.60 12.15 32.16 0.39 -0.21 16 25 N -0.23 -0.05 7.90 60.35 0.48 0.43 16 26 N -0.05 -0.17 13.47 60.35 0.81 0.65 16 27 N -0.24 -1.21 11.10 32.15 0.36 -0.85 16 28 C -0.11 -0.02 5.57 -26.73 -0.15 -0.17 16 29 C -0.12 0.15 5.39 -26.73 -0.14 0.01 16 30 C -0.20 -0.08 10.38 29.93 0.31 0.23 16 31 S 0.17 0.19 20.18 -107.50 -2.17 -1.98 16 32 H 0.38 -1.89 8.74 45.56 0.40 -1.49 16 33 H 0.08 -0.15 7.96 -51.93 -0.41 -0.56 16 34 H -0.24 -0.10 7.11 56.52 0.40 0.30 16 35 H -0.23 -0.32 7.11 56.52 0.40 0.08 16 36 H 0.16 0.63 8.06 -52.48 -0.42 0.21 16 37 H 0.40 -0.89 7.10 -40.82 -0.29 -1.18 16 38 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 39 H 0.07 0.03 8.14 -51.93 -0.42 -0.39 16 40 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 41 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 42 H 0.17 -0.59 8.06 -52.49 -0.42 -1.01 16 43 H 0.15 -0.60 8.06 -52.48 -0.42 -1.02 16 44 H 0.15 -0.23 7.96 -52.48 -0.42 -0.65 16 45 H 0.48 -2.13 8.96 -340.36 -3.05 -5.18 16 46 H 0.08 0.09 8.14 -51.93 -0.42 -0.34 16 47 H 0.08 0.01 8.14 -51.93 -0.42 -0.42 16 48 H 0.08 -0.14 8.14 -51.93 -0.42 -0.56 16 49 H 0.07 -0.17 8.14 -51.93 -0.42 -0.59 16 50 H 0.17 -0.50 7.01 -52.49 -0.37 -0.87 16 LS Contribution 434.53 15.07 6.55 6.55 Total: 0.00 -12.38 434.53 -13.17 -25.55 By element: Atomic # 1 Polarization: -5.95 SS G_CDS: -8.75 Total: -14.70 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: -4.68 Total: -1.67 kcal Atomic # 7 Polarization: -3.46 SS G_CDS: 1.65 Total: -1.81 kcal Atomic # 8 Polarization: -5.18 SS G_CDS: -0.52 Total: -5.70 kcal Atomic # 14 Polarization: -0.99 SS G_CDS: -5.25 Total: -6.24 kcal Atomic # 16 Polarization: 0.19 SS G_CDS: -2.17 Total: -1.98 kcal Total LS contribution 6.55 Total: 6.55 kcal Total: -12.38 -13.17 -25.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_280130_17857882_17900784.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.878 kcal (2) G-P(sol) polarization free energy of solvation -12.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds