Wall clock time and date at job start Sat Mar 6 2021 06:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36765 * 125.80602 * 2 1 4 4 C 1.47266 * 126.94251 * 0.03975 * 3 2 1 5 5 O 1.21633 * 119.99684 * 0.02562 * 4 3 2 6 6 N 1.34777 * 119.99934 * 180.02562 * 4 3 2 7 7 C 1.46497 * 119.99726 * 180.02562 * 6 4 3 8 8 H 1.09009 * 109.47371 * 34.99462 * 7 6 4 9 9 C 1.52995 * 109.47213 * 154.99734 * 7 6 4 10 10 C 1.53005 * 109.47400 * 179.97438 * 9 7 6 11 11 C 1.53003 * 109.46890 * 300.00224 * 10 9 7 12 12 H 1.08991 * 109.46915 * 299.99566 * 11 10 9 13 13 O 1.42906 * 109.46622 * 179.97438 * 11 10 9 14 14 C 1.35615 * 116.99214 * 149.99846 * 13 11 10 15 15 N 1.32136 * 119.76818 * 359.72598 * 14 13 11 16 16 C 1.31995 * 121.76687 * 179.75334 * 15 14 13 17 17 C 1.38138 * 121.09021 * 0.52409 * 16 15 14 18 18 C 1.38594 * 119.41267 * 359.74796 * 17 16 15 19 19 C 1.39485 * 118.37869 * 359.97438 * 18 17 16 20 20 C 1.48389 * 120.55936 * 179.97438 * 19 18 17 21 21 N 1.31833 * 126.68257 * 0.02562 * 20 19 18 22 22 N 1.28865 * 107.81957 * 179.97438 * 21 20 19 23 23 N 1.28733 * 109.32157 * 359.97438 * 22 21 20 24 24 N 1.28982 * 108.95103 * 359.72560 * 23 22 21 25 25 C 1.52994 * 109.47428 * 60.00067 * 11 10 9 26 26 C 1.53005 * 109.47030 * 299.99847 * 25 11 10 27 27 C 1.46692 * 106.11680 * 180.02562 * 3 2 1 28 28 C 1.34482 * 106.33230 * 0.22793 * 27 3 2 29 29 C 1.50702 * 125.57233 * 179.73667 * 28 27 3 30 30 O 1.42901 * 109.46830 * 65.00089 * 29 28 27 31 31 Si 1.86301 * 109.46924 * 184.99980 * 29 28 27 32 32 N 1.34662 * 125.79609 * 180.02562 * 2 1 3 33 33 H 1.09000 * 109.47312 * 89.99541 * 1 2 3 34 34 H 1.08990 * 109.47410 * 210.00006 * 1 2 3 35 35 H 1.09005 * 109.46465 * 329.99847 * 1 2 3 36 36 H 0.96997 * 119.99990 * 359.97438 * 6 4 3 37 37 H 1.08997 * 109.47138 * 300.00019 * 9 7 6 38 38 H 1.09003 * 109.47327 * 60.00051 * 9 7 6 39 39 H 1.09003 * 109.46611 * 59.99891 * 10 9 7 40 40 H 1.08993 * 109.47512 * 179.97438 * 10 9 7 41 41 H 1.07991 * 119.45048 * 180.29772 * 16 15 14 42 42 H 1.08006 * 120.29459 * 179.72429 * 17 16 15 43 43 H 1.08003 * 120.80929 * 179.97438 * 18 17 16 44 44 H 0.97000 * 125.34365 * 180.02562 * 22 21 20 45 45 H 1.09003 * 109.47551 * 59.99428 * 25 11 10 46 46 H 1.08994 * 109.47400 * 180.02562 * 25 11 10 47 47 H 1.09003 * 109.46611 * 300.00157 * 26 25 11 48 48 H 1.09002 * 109.47491 * 179.97438 * 26 25 11 49 49 H 1.08002 * 126.83095 * 179.97438 * 27 3 2 50 50 H 1.08997 * 109.46922 * 304.99968 * 29 28 27 51 51 H 0.96697 * 113.99765 * 59.99954 * 30 29 28 52 52 H 1.48505 * 109.99758 * 180.02562 * 31 29 28 53 53 H 1.48493 * 109.99962 * 301.31846 * 31 29 28 54 54 H 0.96995 * 124.85549 * 359.97438 * 32 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3072 1.1092 0.0000 4 6 1.8704 2.5156 0.0008 5 8 0.6840 2.7839 0.0021 6 7 2.7853 3.5053 0.0002 7 6 2.3507 4.9043 0.0016 8 1 1.4397 5.0013 0.5922 9 6 3.4487 5.7788 0.6103 10 6 2.9952 7.2401 0.6112 11 6 2.7225 7.6902 -0.8255 12 1 3.6335 7.5929 -1.4158 13 8 2.2983 9.0549 -0.8245 14 6 2.6023 9.7947 -1.9197 15 7 3.2671 9.2435 -2.9199 16 6 3.5794 9.9253 -4.0061 17 6 3.2309 11.2555 -4.1382 18 6 2.5372 11.8822 -3.1150 19 6 2.2142 11.1382 -1.9803 20 6 1.4730 11.7608 -0.8556 21 7 1.0517 13.0080 -0.7847 22 7 0.4531 13.1583 0.3465 23 7 0.4811 12.0462 0.9943 24 7 1.0950 11.1625 0.2831 25 6 1.6244 6.8159 -1.4342 26 6 2.0779 5.3546 -1.4351 27 6 3.6883 0.6149 -0.0006 28 6 3.6096 -0.7276 -0.0061 29 6 4.7819 -1.6745 -0.0144 30 8 5.5146 -1.5360 1.2047 31 14 4.1649 -3.4252 -0.1727 32 7 2.2947 -1.0923 -0.0005 33 1 -0.3634 0.0001 -1.0277 34 1 -0.3634 -0.8899 0.5138 35 1 -0.3632 0.8900 0.5139 36 1 3.7313 3.2912 -0.0004 37 1 3.6433 5.4578 1.6336 38 1 4.3597 5.6819 0.0196 39 1 2.0841 7.3373 1.2016 40 1 3.7772 7.8630 1.0452 41 1 4.1196 9.4361 -4.8031 42 1 3.4968 11.8023 -5.0308 43 1 2.2538 12.9213 -3.1944 44 1 0.0447 13.9803 0.6604 45 1 0.7133 6.9131 -0.8438 46 1 1.4305 7.1363 -2.4578 47 1 2.9891 5.2574 -2.0255 48 1 1.2955 4.7315 -1.8683 49 1 4.5891 1.2107 -0.0012 50 1 5.4318 -1.4406 -0.8575 51 1 4.9973 -1.7292 1.9985 52 1 5.3115 -4.3689 -0.1815 53 1 3.2523 -3.7459 0.9540 54 1 1.9733 -2.0074 -0.0005 There are 78 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 78 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_280130_17857882_17907338.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 06:37:03 Heat of formation + Delta-G solvation = 99.488167 kcal Electronic energy + Delta-G solvation = -40594.510438 eV Core-core repulsion = 35343.887161 eV Total energy + Delta-G solvation = -5250.623277 eV No. of doubly occupied orbitals = 78 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 426.185 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -45.43609 -42.47523 -41.80483 -40.68331 -39.54165 -37.99072 -37.75722 -35.58645 -34.94093 -34.82284 -32.87012 -32.80050 -32.29860 -31.88509 -31.36299 -29.59396 -28.82157 -26.25317 -25.77619 -25.53422 -24.52174 -23.91906 -23.48201 -23.10933 -22.34202 -21.49685 -21.25912 -20.45102 -20.21718 -19.37625 -18.73565 -18.14781 -17.91401 -17.71706 -17.40322 -17.30473 -16.81463 -16.63945 -16.54878 -16.00739 -15.84199 -15.71236 -15.43469 -15.15556 -15.12424 -14.95322 -14.68179 -14.50401 -14.47358 -14.24329 -14.14573 -13.95786 -13.85274 -13.79254 -13.49012 -13.36300 -13.28110 -12.99282 -12.86971 -12.74680 -12.62093 -12.60565 -12.49213 -12.24202 -12.17969 -12.16528 -12.13358 -12.04385 -11.48949 -11.22827 -10.97219 -10.69003 -10.66191 -10.58762 -10.10901 -9.78908 -9.38748 -9.14944 -5.04105 -0.43141 0.17280 0.26475 0.71955 1.14300 1.28531 1.29070 1.41671 1.45751 1.81917 1.91469 2.07238 2.43838 2.55671 2.63031 2.76441 3.11063 3.32083 3.35137 3.59997 3.66541 3.67963 3.86678 3.89306 3.98855 4.02427 4.06592 4.15481 4.17010 4.19674 4.24414 4.27039 4.35897 4.40141 4.43755 4.46671 4.52346 4.56584 4.59183 4.65402 4.72849 4.79164 4.81565 4.91417 5.00497 5.02928 5.04978 5.08899 5.11926 5.15953 5.22679 5.26915 5.32777 5.49538 5.59835 5.60522 5.71042 5.87463 6.27199 6.40822 6.46018 6.69877 6.77758 7.14986 7.38969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.118 3.882 3 C -0.264 4.264 4 C 0.587 3.413 5 O -0.586 6.586 6 N -0.712 5.712 7 C 0.149 3.851 8 H 0.066 0.934 9 C -0.110 4.110 10 C -0.108 4.108 11 C 0.091 3.909 12 H 0.095 0.905 13 O -0.289 6.289 14 C 0.345 3.655 15 N -0.552 5.552 16 C 0.157 3.843 17 C -0.203 4.203 18 C -0.003 4.003 19 C -0.119 4.119 20 C 0.215 3.785 21 N -0.295 5.295 22 N -0.204 5.204 23 N -0.066 5.066 24 N -0.276 5.276 25 C -0.121 4.121 26 C -0.112 4.112 27 C -0.135 4.135 28 C -0.022 4.022 29 C -0.047 4.047 30 O -0.541 6.541 31 Si 0.754 3.246 32 N -0.535 5.535 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.412 0.588 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.066 0.934 40 H 0.081 0.919 41 H 0.197 0.803 42 H 0.180 0.820 43 H 0.165 0.835 44 H 0.493 0.507 45 H 0.056 0.944 46 H 0.062 0.938 47 H 0.080 0.920 48 H 0.053 0.947 49 H 0.159 0.841 50 H 0.141 0.859 51 H 0.386 0.614 52 H -0.293 1.293 53 H -0.275 1.275 54 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.134 -0.050 -5.008 5.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.002 4.002 3 C -0.274 4.274 4 C 0.378 3.622 5 O -0.469 6.469 6 N -0.362 5.362 7 C 0.044 3.956 8 H 0.084 0.916 9 C -0.148 4.148 10 C -0.146 4.146 11 C 0.035 3.965 12 H 0.113 0.887 13 O -0.194 6.194 14 C 0.164 3.836 15 N -0.276 5.276 16 C 0.001 3.999 17 C -0.223 4.223 18 C -0.030 4.030 19 C -0.126 4.126 20 C -0.065 4.065 21 N -0.148 5.148 22 N -0.054 5.054 23 N -0.062 5.062 24 N -0.148 5.148 25 C -0.160 4.160 26 C -0.150 4.150 27 C -0.159 4.159 28 C -0.130 4.130 29 C -0.156 4.156 30 O -0.348 6.348 31 Si 0.658 3.342 32 N -0.136 5.136 33 H 0.105 0.895 34 H 0.107 0.893 35 H 0.098 0.902 36 H 0.248 0.752 37 H 0.105 0.895 38 H 0.109 0.891 39 H 0.085 0.915 40 H 0.099 0.901 41 H 0.214 0.786 42 H 0.197 0.803 43 H 0.182 0.818 44 H 0.352 0.648 45 H 0.074 0.926 46 H 0.081 0.919 47 H 0.099 0.901 48 H 0.071 0.929 49 H 0.177 0.823 50 H 0.158 0.842 51 H 0.236 0.764 52 H -0.220 1.220 53 H -0.202 1.202 54 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 2.546 -1.457 -4.067 5.014 hybrid contribution -0.083 1.240 0.998 1.594 sum 2.463 -0.217 -3.069 3.941 Atomic orbital electron populations 1.20606 0.86233 1.04398 1.04158 1.20537 0.94222 0.85655 0.99800 1.20196 0.94246 0.91639 1.21301 1.17632 0.85015 0.84987 0.74596 1.90734 1.18174 1.84982 1.52967 1.45698 1.10159 1.05116 1.75225 1.20921 0.98337 0.80098 0.96267 0.91585 1.21679 0.98022 0.92335 1.02758 1.21493 1.02730 0.96065 0.94290 1.22505 0.98295 0.77317 0.98344 0.88698 1.86507 1.73440 1.24666 1.34829 1.19887 0.89267 0.87782 0.86702 1.67493 1.17344 1.39836 1.02901 1.23312 0.91982 0.91729 0.92868 1.22340 1.02098 0.96333 1.01507 1.21788 0.91240 1.00719 0.89247 1.17389 1.08453 0.92063 0.94682 1.23476 1.00633 0.87204 0.95231 1.74832 1.14652 1.19353 1.05974 1.47790 1.35242 1.13767 1.08607 1.78936 1.15584 0.90597 1.21042 1.76297 1.12248 1.22946 1.03306 1.21780 0.98403 0.94797 1.00989 1.21723 1.01992 0.94386 0.96924 1.21980 0.95363 0.93170 1.05392 1.20618 0.84627 0.95565 1.12204 1.24630 0.93090 1.07514 0.90410 1.86630 1.40998 1.91015 1.16166 0.94549 0.80395 0.72023 0.87276 1.41703 1.05283 1.08734 1.57841 0.89525 0.89327 0.90212 0.75158 0.89450 0.89063 0.91529 0.90086 0.78620 0.80278 0.81775 0.64818 0.92563 0.91935 0.90089 0.92851 0.82348 0.84158 0.76414 1.22004 1.20152 0.73335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.10 9.88 71.24 0.70 0.61 16 2 C 0.12 0.29 7.17 41.78 0.30 0.59 16 3 C -0.26 -1.35 6.29 -19.04 -0.12 -1.47 16 4 C 0.59 5.10 7.77 86.62 0.67 5.77 16 5 O -0.59 -9.20 14.47 -4.14 -0.06 -9.26 16 6 N -0.71 -2.00 5.07 -445.94 -2.26 -4.26 16 7 C 0.15 0.52 2.45 44.99 0.11 0.63 16 8 H 0.07 0.60 7.58 -2.38 -0.02 0.58 16 9 C -0.11 0.12 5.39 30.59 0.16 0.29 16 10 C -0.11 -0.27 5.57 30.60 0.17 -0.10 16 11 C 0.09 0.45 2.38 30.59 0.07 0.53 16 12 H 0.10 0.38 6.98 -2.39 -0.02 0.37 16 13 O -0.29 -2.78 8.14 -89.26 -0.73 -3.51 16 14 C 0.34 2.68 7.47 85.07 0.64 3.31 16 15 N -0.55 -2.31 8.64 -308.22 -2.66 -4.98 16 16 C 0.16 -0.38 11.17 84.64 0.95 0.56 16 17 C -0.20 0.93 10.09 22.33 0.23 1.15 16 18 C 0.00 0.00 9.83 22.66 0.22 0.22 16 19 C -0.12 -0.76 5.91 -19.85 -0.12 -0.88 16 20 C 0.21 1.91 7.92 137.34 1.09 3.00 16 21 N -0.29 -1.37 12.15 -52.16 -0.63 -2.00 16 22 N -0.20 -0.21 7.90 37.02 0.29 0.08 16 23 N -0.07 -0.53 13.47 37.02 0.50 -0.03 16 24 N -0.28 -3.33 11.10 -52.21 -0.58 -3.91 16 25 C -0.12 -0.71 5.54 30.59 0.17 -0.55 16 26 C -0.11 -0.46 5.49 30.60 0.17 -0.30 16 27 C -0.13 -0.10 10.45 23.62 0.25 0.14 16 28 C -0.02 0.04 6.09 40.98 0.25 0.29 16 29 C -0.05 0.19 2.98 71.24 0.21 0.40 16 30 O -0.54 0.36 12.88 -148.98 -1.92 -1.56 16 31 Si 0.75 -4.40 30.96 68.60 2.12 -2.28 16 32 N -0.54 1.42 5.41 -171.07 -0.93 0.50 16 33 H 0.09 0.00 8.14 -2.39 -0.02 -0.02 16 34 H 0.09 -0.37 8.14 -2.39 -0.02 -0.39 16 35 H 0.08 0.53 6.46 -2.38 -0.02 0.52 16 36 H 0.41 -1.00 7.72 -92.71 -0.72 -1.72 16 37 H 0.09 -0.20 8.14 -2.39 -0.02 -0.21 16 38 H 0.09 -0.40 8.14 -2.39 -0.02 -0.42 16 39 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 40 H 0.08 0.15 8.14 -2.39 -0.02 0.13 16 41 H 0.20 -1.84 8.06 -2.91 -0.02 -1.87 16 42 H 0.18 -2.05 8.06 -2.91 -0.02 -2.07 16 43 H 0.16 -0.64 7.96 -2.91 -0.02 -0.67 16 44 H 0.49 -4.37 8.96 -347.53 -3.12 -7.49 16 45 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 46 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 47 H 0.08 0.13 8.14 -2.39 -0.02 0.11 16 48 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 49 H 0.16 -0.41 7.70 -2.91 -0.02 -0.43 16 50 H 0.14 -0.88 7.96 -2.39 -0.02 -0.90 16 51 H 0.39 -2.17 8.70 -74.06 -0.64 -2.82 16 52 H -0.29 -0.68 7.11 99.48 0.71 0.03 16 53 H -0.28 0.74 7.11 99.48 0.71 1.45 16 54 H 0.43 -3.37 6.72 -92.71 -0.62 -3.99 16 Total: 0.00 -30.35 448.54 -4.77 -35.12 By element: Atomic # 1 Polarization: -14.08 SS G_CDS: -4.04 Total: -18.12 kcal Atomic # 6 Polarization: 8.09 SS G_CDS: 6.12 Total: 14.21 kcal Atomic # 7 Polarization: -8.33 SS G_CDS: -6.27 Total: -14.60 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: -2.71 Total: -14.33 kcal Atomic # 14 Polarization: -4.40 SS G_CDS: 2.12 Total: -2.28 kcal Total: -30.35 -4.77 -35.12 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_280130_17857882_17907338.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.610 kcal (2) G-P(sol) polarization free energy of solvation -30.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds