Wall clock time and date at job start Fri Mar 5 2021 23:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35991 * 117.00364 * 2 1 4 4 C 1.39151 * 120.07619 * 179.72796 * 3 2 1 5 5 O 1.36002 * 120.06937 * 0.02562 * 4 3 2 6 6 C 1.42902 * 116.99631 * 180.02562 * 5 4 3 7 7 C 1.52999 * 109.46696 * 179.97438 * 6 5 4 8 8 O 1.42894 * 109.47502 * 65.00158 * 7 6 5 9 9 Si 1.63102 * 114.00344 * 179.97438 * 8 7 6 10 10 C 1.86299 * 109.46776 * 299.99753 * 9 8 7 11 11 C 1.86296 * 109.47037 * 59.99650 * 9 8 7 12 12 C 1.86299 * 109.47312 * 179.97438 * 9 8 7 13 13 C 1.52998 * 109.47011 * 59.99795 * 12 9 8 14 14 C 1.52996 * 109.47094 * 179.97438 * 12 9 8 15 15 C 1.53004 * 109.47012 * 299.99852 * 12 9 8 16 16 C 1.38559 * 119.85592 * 179.72039 * 4 3 2 17 17 C 1.38247 * 119.99995 * 0.55606 * 16 4 3 18 18 C 1.50697 * 119.92893 * 179.74231 * 17 16 4 19 19 O 1.42904 * 109.46807 * 104.97894 * 18 17 16 20 20 Si 1.86296 * 109.47037 * 344.97555 * 18 17 16 21 21 H 1.48504 * 109.47138 * 60.00299 * 20 18 17 22 22 H 1.48505 * 109.46897 * 179.97438 * 20 18 17 23 23 H 1.48492 * 109.47416 * 299.99809 * 20 18 17 24 24 C 1.38254 * 120.14265 * 359.71512 * 17 16 4 25 25 C 1.50700 * 119.92546 * 179.97438 * 24 17 16 26 26 C 1.38239 * 120.14652 * 0.02562 * 24 17 16 27 27 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46938 * 59.99845 * 1 2 3 29 29 H 1.09004 * 109.46926 * 299.99967 * 1 2 3 30 30 H 1.09001 * 109.46853 * 299.99631 * 6 5 4 31 31 H 1.08996 * 109.47505 * 59.99406 * 6 5 4 32 32 H 1.09004 * 109.46524 * 184.99879 * 7 6 5 33 33 H 1.08999 * 109.47059 * 304.99436 * 7 6 5 34 34 H 1.08999 * 109.47167 * 60.00036 * 10 9 8 35 35 H 1.08997 * 109.46967 * 180.02562 * 10 9 8 36 36 H 1.08997 * 109.47215 * 299.99658 * 10 9 8 37 37 H 1.08997 * 109.47229 * 60.00022 * 11 9 8 38 38 H 1.08999 * 109.47131 * 180.02562 * 11 9 8 39 39 H 1.08999 * 109.47255 * 300.00178 * 11 9 8 40 40 H 1.08997 * 109.47153 * 60.00304 * 13 12 9 41 41 H 1.08999 * 109.47119 * 180.02562 * 13 12 9 42 42 H 1.08999 * 109.47344 * 299.99665 * 13 12 9 43 43 H 1.09004 * 109.47139 * 60.00311 * 14 12 9 44 44 H 1.09000 * 109.47064 * 179.97438 * 14 12 9 45 45 H 1.08997 * 109.47428 * 299.99916 * 14 12 9 46 46 H 1.09004 * 109.46801 * 59.99898 * 15 12 9 47 47 H 1.08999 * 109.46973 * 179.97438 * 15 12 9 48 48 H 1.08997 * 109.47225 * 300.00157 * 15 12 9 49 49 H 1.08001 * 120.00429 * 180.27535 * 16 4 3 50 50 H 1.08996 * 109.46996 * 224.97511 * 18 17 16 51 51 H 0.96703 * 113.99712 * 299.99244 * 19 18 17 52 52 H 1.09003 * 109.47268 * 270.02205 * 25 24 17 53 53 H 1.08999 * 109.47143 * 30.02542 * 25 24 17 54 54 H 1.09002 * 109.47287 * 150.02618 * 25 24 17 55 55 H 1.08008 * 120.00118 * 180.02562 * 26 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 3.4360 1.2862 0.0057 5 8 4.1795 0.1475 0.0108 6 6 5.6003 0.3005 0.0171 7 6 6.2617 -1.0792 0.0228 8 8 5.9599 -1.7572 -1.1983 9 14 6.6148 -3.2468 -1.3094 10 6 8.4699 -3.1196 -1.1953 11 6 5.9785 -4.3102 0.0816 12 6 6.1434 -4.0123 -2.9412 13 6 6.6655 -3.1391 -4.0839 14 6 6.7582 -5.4094 -3.0456 15 6 4.6198 -4.1168 -3.0343 16 6 4.0604 2.5232 -0.0002 17 6 3.3031 3.6798 -0.0001 18 6 3.9839 5.0242 -0.0006 19 8 3.8878 5.6062 -1.3022 20 14 5.7780 4.8119 0.4540 21 1 6.4376 3.9227 -0.5357 22 1 6.4490 6.1367 0.4529 23 1 5.8778 4.2072 1.8065 24 6 1.9225 3.6057 -0.0001 25 6 1.1018 4.8696 0.0006 26 6 1.2934 2.3748 0.0004 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 5.9106 0.8489 -0.8724 31 1 5.9025 0.8516 0.9075 32 1 7.3415 -0.9640 0.1171 33 1 5.8834 -1.6600 0.8640 34 1 8.7454 -2.6719 -0.2405 35 1 8.9076 -4.1151 -1.2700 36 1 8.8422 -2.4975 -2.0092 37 1 4.8931 -4.3846 0.0148 38 1 6.4165 -5.3056 0.0076 39 1 6.2539 -3.8625 1.0364 40 1 7.7509 -3.0647 -4.0176 41 1 6.3893 -3.5868 -5.0386 42 1 6.2278 -2.1437 -4.0097 43 1 6.3866 -6.0317 -2.2315 44 1 6.4821 -5.8575 -4.0001 45 1 7.8436 -5.3346 -2.9795 46 1 4.1822 -3.1213 -2.9600 47 1 4.3440 -4.5643 -3.9892 48 1 4.2478 -4.7388 -2.2202 49 1 5.1387 2.5838 -0.0002 50 1 3.4997 5.6769 0.7258 51 1 4.2986 5.0781 -2.0005 52 1 0.9043 5.1740 1.0285 53 1 1.6502 5.6591 -0.5132 54 1 0.1573 4.6898 -0.5129 55 1 0.2147 2.3196 0.0000 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_34_14060148_10902662.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 23:19:58 Heat of formation + Delta-G solvation = -178.809473 kcal Electronic energy + Delta-G solvation = -31268.212378 eV Core-core repulsion = 27201.498035 eV Total energy + Delta-G solvation = -4066.714343 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 356.202 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.76594 -39.67692 -39.20114 -37.75792 -36.91851 -36.83557 -33.05195 -32.12031 -30.70341 -29.34548 -29.07135 -28.66548 -27.84448 -27.64023 -27.39260 -25.82154 -24.34487 -22.47347 -22.04616 -20.42693 -19.63365 -18.36142 -18.10525 -17.98367 -17.41065 -16.91758 -16.41379 -16.14605 -16.12571 -15.98082 -15.66750 -15.50939 -15.42329 -14.87171 -14.84303 -14.75373 -14.63124 -14.27280 -14.05519 -13.87664 -13.57943 -13.50376 -13.38496 -13.22570 -13.17507 -13.03951 -12.97037 -12.93087 -12.73011 -12.69586 -12.41617 -12.26116 -12.15328 -12.10999 -11.99232 -11.81717 -11.71185 -11.60754 -11.59868 -11.48334 -11.26832 -10.36917 -10.32153 -10.06037 -9.74207 -8.74067 0.14911 0.31296 1.16425 1.40682 1.51172 1.51951 1.77657 1.89787 2.13014 2.18540 2.31391 2.47363 2.54075 3.52152 3.60269 3.77856 3.88217 3.92019 4.05957 4.11126 4.11857 4.14023 4.23835 4.27032 4.33133 4.36744 4.38138 4.45827 4.49418 4.60564 4.65346 4.70904 4.73847 4.76559 4.78483 4.79556 4.80856 4.82271 4.82428 4.87225 4.95560 4.98604 5.07926 5.08018 5.11434 5.18782 5.27367 5.32424 5.39321 5.42055 5.48162 5.56872 5.58649 5.64071 5.67554 6.09114 6.58261 6.70835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.330 6.330 3 C 0.089 3.911 4 C 0.083 3.917 5 O -0.313 6.313 6 C 0.041 3.959 7 C 0.077 3.923 8 O -0.639 6.639 9 Si 1.311 2.689 10 C -0.512 4.512 11 C -0.518 4.518 12 C -0.382 4.382 13 C -0.136 4.136 14 C -0.140 4.140 15 C -0.135 4.135 16 C -0.181 4.181 17 C -0.123 4.123 18 C -0.072 4.072 19 O -0.547 6.547 20 Si 0.964 3.036 21 H -0.246 1.246 22 H -0.268 1.268 23 H -0.255 1.255 24 C -0.060 4.060 25 C -0.117 4.117 26 C -0.175 4.175 27 H 0.112 0.888 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.107 0.893 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.062 0.938 38 H 0.078 0.922 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.047 0.953 42 H 0.052 0.948 43 H 0.061 0.939 44 H 0.049 0.951 45 H 0.066 0.934 46 H 0.049 0.951 47 H 0.048 0.952 48 H 0.057 0.943 49 H 0.146 0.854 50 H 0.126 0.874 51 H 0.387 0.613 52 H 0.081 0.919 53 H 0.080 0.920 54 H 0.072 0.928 55 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.018 0.850 1.724 2.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.244 6.244 3 C 0.043 3.957 4 C 0.037 3.963 5 O -0.227 6.227 6 C -0.034 4.034 7 C 0.002 3.998 8 O -0.598 6.598 9 Si 1.441 2.559 10 C -0.615 4.615 11 C -0.619 4.619 12 C -0.425 4.425 13 C -0.193 4.193 14 C -0.197 4.197 15 C -0.192 4.192 16 C -0.199 4.199 17 C -0.124 4.124 18 C -0.182 4.182 19 O -0.354 6.354 20 Si 0.788 3.212 21 H -0.170 1.170 22 H -0.193 1.193 23 H -0.178 1.178 24 C -0.060 4.060 25 C -0.174 4.174 26 C -0.194 4.194 27 H 0.131 0.869 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.110 0.890 32 H 0.125 0.875 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.081 0.919 38 H 0.097 0.903 39 H 0.090 0.910 40 H 0.083 0.917 41 H 0.066 0.934 42 H 0.071 0.929 43 H 0.080 0.920 44 H 0.069 0.931 45 H 0.085 0.915 46 H 0.068 0.932 47 H 0.067 0.933 48 H 0.076 0.924 49 H 0.163 0.837 50 H 0.144 0.856 51 H 0.236 0.764 52 H 0.099 0.901 53 H 0.099 0.901 54 H 0.091 0.909 55 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 1.424 0.990 2.130 2.747 hybrid contribution -0.271 -0.847 -0.440 0.992 sum 1.153 0.143 1.690 2.051 Atomic orbital electron populations 1.23324 0.76693 1.05344 1.02237 1.86159 1.23066 1.26261 1.88937 1.18567 0.89530 0.85785 1.01794 1.18378 0.88684 0.86427 1.02820 1.86222 1.19367 1.28238 1.88920 1.23330 0.78125 0.98934 1.03008 1.22336 0.99942 0.91921 0.85608 1.85397 1.81176 1.52022 1.41219 0.76300 0.62328 0.53290 0.63966 1.27008 1.24184 1.05307 1.04961 1.27119 1.06616 1.12129 1.16076 1.25913 0.98934 1.01981 1.15642 1.21527 1.01117 0.99034 0.97588 1.21594 1.00972 0.94977 1.02120 1.21512 0.94731 1.01355 1.01629 1.21128 1.00657 0.90847 1.07269 1.19986 0.93811 0.94966 1.03615 1.24902 1.10888 0.92929 0.89499 1.86474 1.82466 1.49875 1.16578 0.85500 0.74845 0.79963 0.80891 1.17016 1.19324 1.17843 1.19714 0.93163 0.95244 0.97926 1.20885 0.99253 0.94022 1.03195 1.21228 1.00893 0.90516 1.06759 0.86936 0.91725 0.91507 0.90638 0.89008 0.87502 0.90994 0.90548 0.90223 0.90846 0.91876 0.90291 0.91040 0.91685 0.93370 0.92913 0.91961 0.93143 0.91478 0.93225 0.93270 0.92389 0.83690 0.85643 0.76361 0.90091 0.90088 0.90927 0.82874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.00 9.81 113.37 1.11 1.11 16 2 O -0.33 -2.99 10.28 -79.59 -0.82 -3.81 16 3 C 0.09 0.74 6.70 22.57 0.15 0.89 16 4 C 0.08 0.69 6.70 22.57 0.15 0.84 16 5 O -0.31 -2.85 9.89 -73.52 -0.73 -3.58 16 6 C 0.04 0.06 5.12 71.98 0.37 0.43 16 7 C 0.08 -0.06 5.50 71.98 0.40 0.33 16 8 O -0.64 -1.91 8.52 -144.34 -1.23 -3.14 16 9 Si 1.31 -1.27 8.45 68.60 0.58 -0.69 16 10 C -0.51 1.40 8.50 113.37 0.96 2.36 16 11 C -0.52 -0.13 8.50 113.37 0.96 0.83 16 12 C -0.38 -0.49 0.53 -10.79 -0.01 -0.50 16 13 C -0.14 -0.25 7.84 71.98 0.56 0.32 16 14 C -0.14 0.04 7.85 71.98 0.56 0.60 16 15 C -0.14 -0.50 7.85 71.98 0.56 0.07 16 16 C -0.18 -0.70 7.65 22.35 0.17 -0.53 16 17 C -0.12 -0.31 5.26 -19.86 -0.10 -0.41 16 18 C -0.07 0.06 1.88 71.23 0.13 0.19 16 19 O -0.55 0.05 11.92 -148.98 -1.78 -1.73 16 20 Si 0.96 -1.32 25.49 68.60 1.75 0.43 16 21 H -0.25 0.60 6.73 99.48 0.67 1.27 16 22 H -0.27 -0.42 7.11 99.48 0.71 0.29 16 23 H -0.25 0.07 7.11 99.48 0.71 0.78 16 24 C -0.06 -0.17 5.88 -19.86 -0.12 -0.29 16 25 C -0.12 0.11 9.32 71.24 0.66 0.78 16 26 C -0.18 -0.68 8.69 22.35 0.19 -0.48 16 27 H 0.11 -0.34 8.14 -2.39 -0.02 -0.36 16 28 H 0.06 -0.14 7.66 -2.39 -0.02 -0.16 16 29 H 0.07 -0.18 7.66 -2.38 -0.02 -0.20 16 30 H 0.08 0.02 7.65 -2.39 -0.02 0.00 16 31 H 0.09 -0.31 7.68 -2.39 -0.02 -0.33 16 32 H 0.11 -0.79 7.21 -2.38 -0.02 -0.81 16 33 H 0.07 -0.14 7.21 -2.39 -0.02 -0.16 16 34 H 0.08 -0.34 7.48 -2.39 -0.02 -0.36 16 35 H 0.08 -0.26 7.79 -2.39 -0.02 -0.28 16 36 H 0.07 -0.17 7.79 -2.39 -0.02 -0.19 16 37 H 0.06 0.17 7.79 -2.39 -0.02 0.15 16 38 H 0.08 -0.08 7.79 -2.39 -0.02 -0.10 16 39 H 0.07 -0.06 7.48 -2.39 -0.02 -0.08 16 40 H 0.06 -0.04 7.80 -2.39 -0.02 -0.05 16 41 H 0.05 0.13 8.14 -2.39 -0.02 0.11 16 42 H 0.05 0.17 7.97 -2.39 -0.02 0.15 16 43 H 0.06 -0.09 7.79 -2.39 -0.02 -0.11 16 44 H 0.05 0.05 8.14 -2.39 -0.02 0.03 16 45 H 0.07 -0.17 7.79 -2.39 -0.02 -0.18 16 46 H 0.05 0.29 7.97 -2.38 -0.02 0.27 16 47 H 0.05 0.19 8.14 -2.39 -0.02 0.17 16 48 H 0.06 0.15 7.79 -2.39 -0.02 0.13 16 49 H 0.15 0.02 3.12 -2.91 -0.01 0.01 16 50 H 0.13 -0.34 7.38 -2.39 -0.02 -0.36 16 51 H 0.39 -2.17 8.70 -74.06 -0.64 -2.82 16 52 H 0.08 -0.24 8.14 -2.39 -0.02 -0.26 16 53 H 0.08 0.01 6.19 -2.39 -0.01 -0.01 16 54 H 0.07 -0.17 8.08 -2.39 -0.02 -0.19 16 55 H 0.15 -0.11 6.30 -2.91 -0.02 -0.12 16 Total: 0.00 -15.22 427.85 5.45 -9.78 By element: Atomic # 1 Polarization: -4.73 SS G_CDS: 0.93 Total: -3.80 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: 6.74 Total: 6.54 kcal Atomic # 8 Polarization: -7.70 SS G_CDS: -4.55 Total: -12.26 kcal Atomic # 14 Polarization: -2.59 SS G_CDS: 2.33 Total: -0.26 kcal Total: -15.22 5.45 -9.78 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_34_14060148_10902662.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -169.032 kcal (2) G-P(sol) polarization free energy of solvation -15.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds