Wall clock time and date at job start Fri Mar 5 2021 22:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35994 * 117.00211 * 2 1 4 4 C 1.39160 * 120.07225 * 179.97438 * 3 2 1 5 5 O 1.35987 * 120.07091 * 359.97438 * 4 3 2 6 6 C 1.42905 * 116.99717 * 179.72553 * 5 4 3 7 7 C 1.50701 * 109.47046 * 180.02562 * 6 5 4 8 8 C 1.38234 * 120.00243 * 89.99998 * 7 6 5 9 9 C 1.38234 * 120.00240 * 180.02562 * 8 7 6 10 10 C 1.38233 * 120.00037 * 0.26327 * 9 8 7 11 11 Si 1.86796 * 120.00338 * 179.72477 * 10 9 8 12 12 C 1.86298 * 109.47345 * 89.99399 * 11 10 9 13 13 C 1.86292 * 109.47215 * 209.99657 * 11 10 9 14 14 C 1.86304 * 109.46695 * 329.99459 * 11 10 9 15 15 C 1.38238 * 119.99752 * 359.47832 * 10 9 8 16 16 C 1.38234 * 120.00005 * 0.52168 * 15 10 9 17 17 C 1.38562 * 119.85084 * 179.72576 * 4 3 2 18 18 C 1.38241 * 120.00152 * 0.27755 * 17 4 3 19 19 C 1.50699 * 119.92901 * 179.97438 * 18 17 4 20 20 O 1.42904 * 109.47077 * 104.99579 * 19 18 17 21 21 Si 1.86300 * 109.46992 * 345.00243 * 19 18 17 22 22 H 1.48496 * 109.47432 * 59.99586 * 21 19 18 23 23 H 1.48503 * 109.47223 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47153 * 299.99807 * 21 19 18 25 25 C 1.38256 * 120.14645 * 0.02562 * 18 17 4 26 26 C 1.50697 * 119.92432 * 179.97438 * 25 18 17 27 27 C 1.38240 * 120.14569 * 0.02562 * 25 18 17 28 28 H 1.09005 * 109.46683 * 59.99807 * 1 2 3 29 29 H 1.08994 * 109.47172 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46851 * 300.00085 * 1 2 3 31 31 H 1.08996 * 109.47095 * 59.99943 * 6 5 4 32 32 H 1.08999 * 109.47350 * 299.99879 * 6 5 4 33 33 H 1.07999 * 119.99751 * 359.97438 * 8 7 6 34 34 H 1.08002 * 119.99744 * 179.97438 * 9 8 7 35 35 H 1.08998 * 109.47461 * 60.00145 * 12 11 10 36 36 H 1.08995 * 109.47041 * 180.02562 * 12 11 10 37 37 H 1.09000 * 109.46941 * 300.00096 * 12 11 10 38 38 H 1.08997 * 109.47556 * 59.99827 * 13 11 10 39 39 H 1.09003 * 109.47107 * 179.97438 * 13 11 10 40 40 H 1.09001 * 109.47298 * 299.99936 * 13 11 10 41 41 H 1.09004 * 109.47045 * 60.00345 * 14 11 10 42 42 H 1.09003 * 109.47110 * 180.02562 * 14 11 10 43 43 H 1.09000 * 109.47158 * 300.00133 * 14 11 10 44 44 H 1.07999 * 119.99927 * 180.24100 * 15 10 9 45 45 H 1.08001 * 120.00310 * 179.72165 * 16 15 10 46 46 H 1.08004 * 120.00011 * 180.24908 * 17 4 3 47 47 H 1.08999 * 109.47420 * 224.99717 * 19 18 17 48 48 H 0.96696 * 113.99924 * 300.00308 * 20 19 18 49 49 H 1.08996 * 109.47500 * 90.00105 * 26 25 18 50 50 H 1.09007 * 109.46857 * 209.99418 * 26 25 18 51 51 H 1.08997 * 109.47330 * 329.99241 * 26 25 18 52 52 H 1.08003 * 120.00162 * 180.02562 * 27 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 3.4361 1.2862 0.0005 5 8 4.1795 0.1476 0.0016 6 6 5.6003 0.3005 -0.0040 7 6 6.2518 -1.0584 -0.0025 8 6 6.5463 -1.6851 -1.1990 9 6 7.1434 -2.9318 -1.1976 10 6 7.4411 -3.5543 0.0002 11 14 8.2410 -5.2423 0.0021 12 6 10.0942 -5.0515 -0.0011 13 6 7.7156 -6.1767 1.5257 14 6 7.7109 -6.1823 -1.5165 15 6 7.1515 -2.9253 1.1966 16 6 6.5544 -1.6786 1.1953 17 6 4.0604 2.5232 -0.0052 18 6 3.3031 3.6797 -0.0057 19 6 3.9838 5.0242 -0.0114 20 8 3.8837 5.6033 -1.3140 21 14 5.7795 4.8130 0.4378 22 1 6.4358 3.9216 -0.5520 23 1 6.4505 6.1377 0.4316 24 1 5.8837 4.2111 1.7914 25 6 1.9225 3.6057 0.0001 26 6 1.1019 4.8696 0.0002 27 6 1.2933 2.3748 0.0070 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 5.9098 0.8532 0.8830 32 1 5.9034 0.8473 -0.8969 33 1 6.3091 -1.2010 -2.1348 34 1 7.3731 -3.4215 -2.1324 35 1 10.4044 -4.5015 0.8874 36 1 10.5608 -6.0364 -0.0004 37 1 10.4016 -4.5048 -0.8926 38 1 6.6314 -6.2885 1.5276 39 1 8.1820 -7.1619 1.5266 40 1 8.0257 -5.6268 2.4142 41 1 8.0183 -5.6356 -2.4080 42 1 8.1772 -7.1675 -1.5152 43 1 6.6266 -6.2940 -1.5147 44 1 7.3877 -3.4099 2.1325 45 1 6.3241 -1.1891 2.1300 46 1 5.1387 2.5838 -0.0089 47 1 3.5020 5.6785 0.7152 48 1 4.2921 5.0737 -2.0123 49 1 0.8998 5.1717 -1.0274 50 1 0.1596 4.6909 0.5183 51 1 1.6524 5.6603 0.5098 52 1 0.2147 2.3196 0.0111 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_34_14060148_9403676.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 22:23:14 Heat of formation + Delta-G solvation = -103.074740 kcal Electronic energy + Delta-G solvation = -29655.466560 eV Core-core repulsion = 25708.889189 eV Total energy + Delta-G solvation = -3946.577371 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 360.172 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.75299 -40.26257 -39.27301 -38.94160 -36.97334 -33.49208 -32.51523 -31.86267 -31.86171 -29.58807 -28.85806 -28.43905 -28.41515 -27.72036 -27.28797 -25.58587 -23.46046 -23.28751 -21.99818 -21.84272 -19.53773 -18.42667 -18.01462 -17.63843 -17.20380 -17.01833 -16.48100 -16.30470 -16.15291 -15.96129 -15.58043 -15.36674 -15.03284 -14.75307 -14.44453 -14.34783 -14.25481 -14.19098 -14.11256 -13.88106 -13.85353 -13.62584 -13.47837 -13.27291 -13.26928 -13.20287 -13.10894 -13.10038 -12.75253 -12.58230 -12.29122 -12.18376 -12.15219 -11.98472 -11.85831 -11.60594 -11.54077 -11.03853 -10.90284 -10.82076 -10.40472 -9.75647 -9.69011 -9.66735 -8.67775 0.19482 0.20468 0.38289 0.57156 1.11460 1.34857 1.47786 1.70868 1.85186 1.86838 1.89712 2.30142 2.31253 2.54806 2.60176 3.05650 3.45776 3.57141 3.75103 3.80478 3.81064 3.89187 4.09009 4.12357 4.23120 4.23437 4.24204 4.25390 4.37672 4.44686 4.52577 4.58565 4.60922 4.68188 4.70384 4.71891 4.75025 4.75348 4.76021 4.76522 4.77978 4.84035 4.95753 5.02392 5.12320 5.17501 5.23032 5.41291 5.46754 5.50898 5.53549 5.59860 5.63699 5.64910 5.67458 6.08976 6.13681 6.53559 6.61493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.304 6.304 3 C 0.112 3.888 4 C 0.102 3.898 5 O -0.294 6.294 6 C 0.097 3.903 7 C -0.087 4.087 8 C -0.105 4.105 9 C -0.092 4.092 10 C -0.361 4.361 11 Si 1.059 2.941 12 C -0.449 4.449 13 C -0.450 4.450 14 C -0.450 4.450 15 C -0.092 4.092 16 C -0.106 4.106 17 C -0.178 4.178 18 C -0.121 4.121 19 C -0.073 4.073 20 O -0.535 6.535 21 Si 0.938 3.062 22 H -0.253 1.253 23 H -0.250 1.250 24 H -0.248 1.248 25 C -0.051 4.051 26 C -0.112 4.112 27 C -0.174 4.174 28 H 0.056 0.944 29 H 0.102 0.898 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.121 0.879 34 H 0.123 0.877 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.123 0.877 45 H 0.121 0.879 46 H 0.133 0.867 47 H 0.119 0.881 48 H 0.376 0.624 49 H 0.076 0.924 50 H 0.063 0.937 51 H 0.072 0.928 52 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.056 -0.551 0.103 0.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.217 6.217 3 C 0.066 3.934 4 C 0.056 3.944 5 O -0.208 6.208 6 C 0.022 3.978 7 C -0.087 4.087 8 C -0.123 4.123 9 C -0.110 4.110 10 C -0.403 4.403 11 Si 1.251 2.749 12 C -0.556 4.556 13 C -0.557 4.557 14 C -0.557 4.557 15 C -0.109 4.109 16 C -0.124 4.124 17 C -0.197 4.197 18 C -0.121 4.121 19 C -0.184 4.184 20 O -0.340 6.340 21 Si 0.761 3.239 22 H -0.177 1.177 23 H -0.174 1.174 24 H -0.171 1.171 25 C -0.051 4.051 26 C -0.169 4.169 27 C -0.193 4.193 28 H 0.074 0.926 29 H 0.120 0.880 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.139 0.861 34 H 0.141 0.859 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.090 0.910 44 H 0.141 0.859 45 H 0.139 0.861 46 H 0.151 0.849 47 H 0.137 0.863 48 H 0.223 0.777 49 H 0.095 0.905 50 H 0.082 0.918 51 H 0.091 0.909 52 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 0.614 -0.515 0.664 1.041 hybrid contribution -0.427 0.021 -0.385 0.576 sum 0.187 -0.494 0.279 0.597 Atomic orbital electron populations 1.23114 0.78240 1.04288 1.01336 1.86207 1.21252 1.25640 1.88632 1.18273 0.89025 0.85375 1.00720 1.18064 0.88233 0.85793 1.02287 1.86280 1.17744 1.27973 1.88836 1.21663 0.78850 0.95310 1.01980 1.19422 0.99874 0.95264 0.94116 1.21138 0.98402 0.95610 0.97196 1.21070 0.97229 0.94430 0.98221 1.27478 1.04314 1.14328 0.94170 0.78186 0.66437 0.62897 0.67368 1.26118 1.20229 1.04655 1.04613 1.26134 1.06020 1.08525 1.15062 1.26135 1.06041 1.08570 1.14989 1.21070 0.97243 0.94399 0.98234 1.21144 0.98389 0.95654 0.97188 1.20974 0.99971 0.91235 1.07498 1.19771 0.93647 0.94498 1.04209 1.24859 1.10568 0.93562 0.89395 1.86518 1.82284 1.49265 1.15957 0.85867 0.75527 0.81127 0.81375 1.17678 1.17365 1.17101 1.19441 0.92771 0.94768 0.98121 1.20798 0.98779 0.94286 1.02988 1.21011 1.00095 0.90832 1.07335 0.92557 0.87988 0.92551 0.91287 0.91196 0.86141 0.85886 0.91170 0.91015 0.91172 0.91019 0.90945 0.91172 0.91170 0.90945 0.91019 0.85889 0.86137 0.84936 0.86318 0.77746 0.90499 0.91774 0.90915 0.84397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.01 9.81 101.05 0.99 0.98 16 2 O -0.30 -1.19 10.28 -34.23 -0.35 -1.54 16 3 C 0.11 0.40 6.70 -39.12 -0.26 0.14 16 4 C 0.10 0.38 6.70 -39.12 -0.26 0.12 16 5 O -0.29 -1.32 9.91 -34.20 -0.34 -1.66 16 6 C 0.10 0.18 4.87 36.01 0.18 0.36 16 7 C -0.09 -0.21 5.51 -104.62 -0.58 -0.79 16 8 C -0.11 -0.20 9.70 -39.58 -0.38 -0.59 16 9 C -0.09 -0.09 9.29 -39.58 -0.37 -0.46 16 10 C -0.36 -0.15 4.59 -39.58 -0.18 -0.33 16 11 Si 1.06 -2.27 12.32 -169.99 -2.09 -4.37 16 12 C -0.45 0.60 8.65 101.05 0.87 1.47 16 13 C -0.45 0.64 8.54 101.05 0.86 1.50 16 14 C -0.45 0.64 8.53 101.05 0.86 1.50 16 15 C -0.09 -0.09 9.29 -39.58 -0.37 -0.46 16 16 C -0.11 -0.21 9.70 -39.58 -0.38 -0.59 16 17 C -0.18 -0.35 7.65 -39.46 -0.30 -0.65 16 18 C -0.12 -0.16 5.26 -104.61 -0.55 -0.71 16 19 C -0.07 0.01 2.04 36.01 0.07 0.08 16 20 O -0.54 -0.13 12.81 -35.23 -0.45 -0.58 16 21 Si 0.94 -0.14 25.49 -169.99 -4.33 -4.47 16 22 H -0.25 0.09 6.73 56.52 0.38 0.47 16 23 H -0.25 -0.26 7.11 56.52 0.40 0.15 16 24 H -0.25 -0.14 7.11 56.52 0.40 0.26 16 25 C -0.05 -0.07 5.88 -104.62 -0.62 -0.69 16 26 C -0.11 0.03 9.53 36.00 0.34 0.37 16 27 C -0.17 -0.29 8.69 -39.46 -0.34 -0.63 16 28 H 0.06 -0.08 7.68 -51.93 -0.40 -0.48 16 29 H 0.10 -0.17 8.14 -51.93 -0.42 -0.60 16 30 H 0.06 -0.08 7.65 -51.93 -0.40 -0.48 16 31 H 0.07 0.04 7.61 -51.93 -0.40 -0.36 16 32 H 0.07 0.03 7.61 -51.93 -0.40 -0.36 16 33 H 0.12 0.07 8.06 -52.49 -0.42 -0.35 16 34 H 0.12 -0.13 7.43 -52.49 -0.39 -0.52 16 35 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 36 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 37 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 38 H 0.07 -0.07 7.96 -51.93 -0.41 -0.48 16 39 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 40 H 0.07 -0.11 7.69 -51.93 -0.40 -0.51 16 41 H 0.07 -0.11 7.69 -51.93 -0.40 -0.51 16 42 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 43 H 0.07 -0.07 7.96 -51.93 -0.41 -0.48 16 44 H 0.12 -0.12 7.44 -52.49 -0.39 -0.51 16 45 H 0.12 0.08 8.06 -52.49 -0.42 -0.34 16 46 H 0.13 0.07 3.12 -52.48 -0.16 -0.09 16 47 H 0.12 -0.12 6.48 -51.93 -0.34 -0.46 16 48 H 0.38 -0.99 8.70 45.56 0.40 -0.59 16 49 H 0.08 -0.01 8.14 -51.93 -0.42 -0.43 16 50 H 0.06 -0.08 8.08 -51.93 -0.42 -0.50 16 51 H 0.07 -0.04 6.22 -51.93 -0.32 -0.37 16 52 H 0.14 -0.06 6.30 -52.48 -0.33 -0.39 16 LS Contribution 420.50 15.07 6.34 6.34 Total: 0.00 -6.76 420.50 -9.39 -16.15 By element: Atomic # 1 Polarization: -2.77 SS G_CDS: -7.74 Total: -10.51 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: -0.41 Total: 0.64 kcal Atomic # 8 Polarization: -2.64 SS G_CDS: -1.14 Total: -3.78 kcal Atomic # 14 Polarization: -2.42 SS G_CDS: -6.43 Total: -8.84 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -6.76 -9.39 -16.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_34_14060148_9403676.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.923 kcal (2) G-P(sol) polarization free energy of solvation -6.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds