Wall clock time and date at job start Fri Mar 5 2021 22:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35994 * 117.00211 * 2 1 4 4 C 1.39160 * 120.07225 * 179.97438 * 3 2 1 5 5 O 1.35987 * 120.07091 * 359.97438 * 4 3 2 6 6 C 1.42905 * 116.99717 * 179.72553 * 5 4 3 7 7 C 1.50701 * 109.47046 * 180.02562 * 6 5 4 8 8 C 1.38234 * 120.00243 * 89.99998 * 7 6 5 9 9 C 1.38234 * 120.00240 * 180.02562 * 8 7 6 10 10 C 1.38233 * 120.00037 * 0.26327 * 9 8 7 11 11 Si 1.86796 * 120.00338 * 179.72477 * 10 9 8 12 12 C 1.86298 * 109.47345 * 89.99399 * 11 10 9 13 13 C 1.86292 * 109.47215 * 209.99657 * 11 10 9 14 14 C 1.86304 * 109.46695 * 329.99459 * 11 10 9 15 15 C 1.38238 * 119.99752 * 359.47832 * 10 9 8 16 16 C 1.38234 * 120.00005 * 0.52168 * 15 10 9 17 17 C 1.38562 * 119.85084 * 179.72576 * 4 3 2 18 18 C 1.38241 * 120.00152 * 0.27755 * 17 4 3 19 19 C 1.50699 * 119.92901 * 179.97438 * 18 17 4 20 20 O 1.42904 * 109.47077 * 104.99579 * 19 18 17 21 21 Si 1.86300 * 109.46992 * 345.00243 * 19 18 17 22 22 H 1.48496 * 109.47432 * 59.99586 * 21 19 18 23 23 H 1.48503 * 109.47223 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47153 * 299.99807 * 21 19 18 25 25 C 1.38256 * 120.14645 * 0.02562 * 18 17 4 26 26 C 1.50697 * 119.92432 * 179.97438 * 25 18 17 27 27 C 1.38240 * 120.14569 * 0.02562 * 25 18 17 28 28 H 1.09005 * 109.46683 * 59.99807 * 1 2 3 29 29 H 1.08994 * 109.47172 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46851 * 300.00085 * 1 2 3 31 31 H 1.08996 * 109.47095 * 59.99943 * 6 5 4 32 32 H 1.08999 * 109.47350 * 299.99879 * 6 5 4 33 33 H 1.07999 * 119.99751 * 359.97438 * 8 7 6 34 34 H 1.08002 * 119.99744 * 179.97438 * 9 8 7 35 35 H 1.08998 * 109.47461 * 60.00145 * 12 11 10 36 36 H 1.08995 * 109.47041 * 180.02562 * 12 11 10 37 37 H 1.09000 * 109.46941 * 300.00096 * 12 11 10 38 38 H 1.08997 * 109.47556 * 59.99827 * 13 11 10 39 39 H 1.09003 * 109.47107 * 179.97438 * 13 11 10 40 40 H 1.09001 * 109.47298 * 299.99936 * 13 11 10 41 41 H 1.09004 * 109.47045 * 60.00345 * 14 11 10 42 42 H 1.09003 * 109.47110 * 180.02562 * 14 11 10 43 43 H 1.09000 * 109.47158 * 300.00133 * 14 11 10 44 44 H 1.07999 * 119.99927 * 180.24100 * 15 10 9 45 45 H 1.08001 * 120.00310 * 179.72165 * 16 15 10 46 46 H 1.08004 * 120.00011 * 180.24908 * 17 4 3 47 47 H 1.08999 * 109.47420 * 224.99717 * 19 18 17 48 48 H 0.96696 * 113.99924 * 300.00308 * 20 19 18 49 49 H 1.08996 * 109.47500 * 90.00105 * 26 25 18 50 50 H 1.09007 * 109.46857 * 209.99418 * 26 25 18 51 51 H 1.08997 * 109.47330 * 329.99241 * 26 25 18 52 52 H 1.08003 * 120.00162 * 180.02562 * 27 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 3.4361 1.2862 0.0005 5 8 4.1795 0.1476 0.0016 6 6 5.6003 0.3005 -0.0040 7 6 6.2518 -1.0584 -0.0025 8 6 6.5463 -1.6851 -1.1990 9 6 7.1434 -2.9318 -1.1976 10 6 7.4411 -3.5543 0.0002 11 14 8.2410 -5.2423 0.0021 12 6 10.0942 -5.0515 -0.0011 13 6 7.7156 -6.1767 1.5257 14 6 7.7109 -6.1823 -1.5165 15 6 7.1515 -2.9253 1.1966 16 6 6.5544 -1.6786 1.1953 17 6 4.0604 2.5232 -0.0052 18 6 3.3031 3.6797 -0.0057 19 6 3.9838 5.0242 -0.0114 20 8 3.8837 5.6033 -1.3140 21 14 5.7795 4.8130 0.4378 22 1 6.4358 3.9216 -0.5520 23 1 6.4505 6.1377 0.4316 24 1 5.8837 4.2111 1.7914 25 6 1.9225 3.6057 0.0001 26 6 1.1019 4.8696 0.0002 27 6 1.2933 2.3748 0.0070 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 5.9098 0.8532 0.8830 32 1 5.9034 0.8473 -0.8969 33 1 6.3091 -1.2010 -2.1348 34 1 7.3731 -3.4215 -2.1324 35 1 10.4044 -4.5015 0.8874 36 1 10.5608 -6.0364 -0.0004 37 1 10.4016 -4.5048 -0.8926 38 1 6.6314 -6.2885 1.5276 39 1 8.1820 -7.1619 1.5266 40 1 8.0257 -5.6268 2.4142 41 1 8.0183 -5.6356 -2.4080 42 1 8.1772 -7.1675 -1.5152 43 1 6.6266 -6.2940 -1.5147 44 1 7.3877 -3.4099 2.1325 45 1 6.3241 -1.1891 2.1300 46 1 5.1387 2.5838 -0.0089 47 1 3.5020 5.6785 0.7152 48 1 4.2921 5.0737 -2.0123 49 1 0.8998 5.1717 -1.0274 50 1 0.1596 4.6909 0.5183 51 1 1.6524 5.6603 0.5098 52 1 0.2147 2.3196 0.0111 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_34_14060148_9403676.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 22:23:13 Heat of formation + Delta-G solvation = -94.069516 kcal Electronic energy + Delta-G solvation = -29655.076064 eV Core-core repulsion = 25708.889189 eV Total energy + Delta-G solvation = -3946.186875 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 360.172 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.87377 -40.34535 -39.37523 -39.04106 -37.01009 -33.56007 -32.59599 -31.94323 -31.91771 -29.46524 -28.86306 -28.30611 -28.27820 -27.76416 -27.35468 -25.63179 -23.52067 -23.36673 -22.09937 -21.92030 -19.66300 -18.50519 -18.10528 -17.68860 -17.33142 -17.07847 -16.56198 -16.37111 -16.16995 -16.00077 -15.63522 -15.46462 -15.08861 -14.78968 -14.47596 -14.37128 -14.24609 -14.07819 -14.05724 -13.85899 -13.74497 -13.63005 -13.47291 -13.25461 -13.15378 -13.12076 -13.10612 -12.97700 -12.74952 -12.60452 -12.32058 -12.24399 -12.20013 -12.03151 -11.90566 -11.65023 -11.60293 -10.93639 -10.80299 -10.76969 -10.40962 -9.84199 -9.79856 -9.72085 -8.82822 0.08782 0.12463 0.24858 0.48686 1.11891 1.34576 1.46126 1.81663 1.84658 1.96916 2.01335 2.25814 2.26974 2.48322 2.65433 2.98305 3.43798 3.55970 3.70768 3.72970 3.73572 3.82725 4.03688 4.09151 4.16541 4.17689 4.28688 4.29497 4.34212 4.40882 4.49530 4.60772 4.67427 4.67482 4.75079 4.83979 4.84017 4.87631 4.87740 4.88468 4.88711 4.88980 4.90198 4.96214 5.04232 5.12498 5.21644 5.36298 5.52704 5.53420 5.56387 5.58296 5.62116 5.67223 5.69357 5.98330 6.09074 6.49385 6.67824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.332 6.332 3 C 0.092 3.908 4 C 0.078 3.922 5 O -0.316 6.316 6 C 0.095 3.905 7 C -0.104 4.104 8 C -0.122 4.122 9 C -0.102 4.102 10 C -0.374 4.374 11 Si 1.127 2.873 12 C -0.460 4.460 13 C -0.463 4.463 14 C -0.462 4.462 15 C -0.102 4.102 16 C -0.123 4.123 17 C -0.179 4.179 18 C -0.122 4.122 19 C -0.068 4.068 20 O -0.545 6.545 21 Si 0.960 3.040 22 H -0.250 1.250 23 H -0.265 1.265 24 H -0.259 1.259 25 C -0.056 4.056 26 C -0.110 4.110 27 C -0.173 4.173 28 H 0.067 0.933 29 H 0.112 0.888 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.126 0.874 34 H 0.142 0.858 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.066 0.934 44 H 0.141 0.859 45 H 0.125 0.875 46 H 0.142 0.858 47 H 0.130 0.870 48 H 0.387 0.613 49 H 0.077 0.923 50 H 0.075 0.925 51 H 0.077 0.923 52 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.029 -0.494 0.002 0.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.246 6.246 3 C 0.046 3.954 4 C 0.033 3.967 5 O -0.231 6.231 6 C 0.020 3.980 7 C -0.104 4.104 8 C -0.140 4.140 9 C -0.120 4.120 10 C -0.413 4.413 11 Si 1.314 2.686 12 C -0.567 4.567 13 C -0.570 4.570 14 C -0.569 4.569 15 C -0.120 4.120 16 C -0.141 4.141 17 C -0.197 4.197 18 C -0.123 4.123 19 C -0.179 4.179 20 O -0.351 6.351 21 Si 0.785 3.215 22 H -0.174 1.174 23 H -0.190 1.190 24 H -0.183 1.183 25 C -0.057 4.057 26 C -0.167 4.167 27 C -0.191 4.191 28 H 0.085 0.915 29 H 0.131 0.869 30 H 0.086 0.914 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.144 0.856 34 H 0.159 0.841 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.095 0.905 43 H 0.085 0.915 44 H 0.159 0.841 45 H 0.143 0.857 46 H 0.159 0.841 47 H 0.147 0.853 48 H 0.236 0.764 49 H 0.096 0.904 50 H 0.094 0.906 51 H 0.096 0.904 52 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 0.520 -0.445 0.552 0.879 hybrid contribution -0.412 0.003 -0.358 0.546 sum 0.108 -0.441 0.194 0.494 Atomic orbital electron populations 1.23344 0.76474 1.05418 1.02383 1.86160 1.23283 1.26267 1.88909 1.18557 0.89313 0.85903 1.01599 1.18366 0.88652 0.86165 1.03490 1.86236 1.18831 1.28860 1.89199 1.21771 0.77944 0.95490 1.02752 1.19601 1.00481 0.95772 0.94591 1.21368 0.98908 0.96325 0.97393 1.21400 0.96974 0.94251 0.99378 1.28134 1.03734 1.15657 0.93725 0.77185 0.64868 0.60397 0.66153 1.26252 1.21075 1.04896 1.04474 1.26281 1.05817 1.09063 1.15810 1.26278 1.05844 1.09104 1.15719 1.21395 0.97012 0.94210 0.99399 1.21371 0.98956 0.96396 0.97381 1.21100 1.00506 0.90948 1.07180 1.19976 0.93877 0.94851 1.03617 1.24854 1.10349 0.93016 0.89668 1.86490 1.82532 1.49782 1.16339 0.85554 0.75329 0.79970 0.80666 1.17447 1.18978 1.18339 1.19730 0.93060 0.95373 0.97515 1.20829 0.99123 0.93478 1.03247 1.21238 1.00997 0.90328 1.06569 0.91484 0.86933 0.91429 0.90547 0.90281 0.85557 0.84078 0.91342 0.90536 0.91326 0.91480 0.90505 0.90892 0.90863 0.90507 0.91472 0.84122 0.85657 0.84093 0.85268 0.76401 0.90431 0.90584 0.90421 0.82541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.01 9.81 113.37 1.11 1.11 16 2 O -0.33 -3.07 10.28 -79.61 -0.82 -3.89 16 3 C 0.09 0.78 6.70 22.57 0.15 0.93 16 4 C 0.08 0.72 6.70 22.57 0.15 0.87 16 5 O -0.32 -3.50 9.91 -79.54 -0.79 -4.29 16 6 C 0.09 0.52 4.87 71.24 0.35 0.87 16 7 C -0.10 -0.68 5.51 -19.86 -0.11 -0.79 16 8 C -0.12 -0.63 9.70 22.27 0.22 -0.41 16 9 C -0.10 -0.26 9.29 22.27 0.21 -0.05 16 10 C -0.37 -0.41 4.59 22.27 0.10 -0.31 16 11 Si 1.13 -5.37 12.32 68.60 0.85 -4.53 16 12 C -0.46 1.50 8.65 113.37 0.98 2.48 16 13 C -0.46 1.53 8.54 113.37 0.97 2.50 16 14 C -0.46 1.56 8.53 113.37 0.97 2.53 16 15 C -0.10 -0.27 9.29 22.27 0.21 -0.07 16 16 C -0.12 -0.66 9.70 22.27 0.22 -0.44 16 17 C -0.18 -0.85 7.65 22.35 0.17 -0.68 16 18 C -0.12 -0.34 5.26 -19.86 -0.10 -0.44 16 19 C -0.07 0.03 2.04 71.24 0.15 0.18 16 20 O -0.54 0.04 12.81 -148.98 -1.91 -1.87 16 21 Si 0.96 -0.10 25.49 68.60 1.75 1.65 16 22 H -0.25 0.16 6.73 99.48 0.67 0.83 16 23 H -0.27 -0.64 7.11 99.48 0.71 0.06 16 24 H -0.26 -0.46 7.11 99.48 0.71 0.25 16 25 C -0.06 -0.14 5.88 -19.86 -0.12 -0.26 16 26 C -0.11 0.16 9.53 71.23 0.68 0.84 16 27 C -0.17 -0.61 8.69 22.35 0.19 -0.42 16 28 H 0.07 -0.19 7.68 -2.38 -0.02 -0.21 16 29 H 0.11 -0.35 8.14 -2.39 -0.02 -0.37 16 30 H 0.07 -0.20 7.65 -2.39 -0.02 -0.21 16 31 H 0.08 0.22 7.61 -2.39 -0.02 0.20 16 32 H 0.08 0.20 7.61 -2.39 -0.02 0.18 16 33 H 0.13 0.34 8.06 -2.91 -0.02 0.32 16 34 H 0.14 -0.30 7.43 -2.91 -0.02 -0.32 16 35 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 36 H 0.08 -0.31 7.96 -2.39 -0.02 -0.33 16 37 H 0.07 -0.19 7.96 -2.39 -0.02 -0.20 16 38 H 0.07 -0.14 7.96 -2.39 -0.02 -0.16 16 39 H 0.08 -0.31 7.96 -2.39 -0.02 -0.32 16 40 H 0.07 -0.27 7.69 -2.39 -0.02 -0.29 16 41 H 0.07 -0.28 7.69 -2.38 -0.02 -0.30 16 42 H 0.08 -0.31 7.96 -2.39 -0.02 -0.33 16 43 H 0.07 -0.15 7.96 -2.39 -0.02 -0.16 16 44 H 0.14 -0.27 7.44 -2.91 -0.02 -0.29 16 45 H 0.13 0.39 8.06 -2.91 -0.02 0.36 16 46 H 0.14 0.28 3.12 -2.91 -0.01 0.27 16 47 H 0.13 -0.36 6.48 -2.39 -0.02 -0.37 16 48 H 0.39 -2.19 8.70 -74.06 -0.64 -2.83 16 49 H 0.08 -0.10 8.14 -2.39 -0.02 -0.12 16 50 H 0.08 -0.29 8.08 -2.38 -0.02 -0.31 16 51 H 0.08 -0.18 6.22 -2.39 -0.01 -0.20 16 52 H 0.16 -0.21 6.30 -2.91 -0.02 -0.23 16 Total: 0.00 -16.33 420.50 6.55 -9.78 By element: Atomic # 1 Polarization: -6.26 SS G_CDS: 0.99 Total: -5.27 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: 6.48 Total: 8.42 kcal Atomic # 8 Polarization: -6.54 SS G_CDS: -3.51 Total: -10.05 kcal Atomic # 14 Polarization: -5.47 SS G_CDS: 2.59 Total: -2.88 kcal Total: -16.33 6.55 -9.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_34_14060148_9403676.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.292 kcal (2) G-P(sol) polarization free energy of solvation -16.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds