Wall clock time and date at job start Fri Mar 5 2021 23:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42901 * 112.84909 * 2 1 4 4 C 1.53779 * 113.61836 * 131.19879 * 2 1 3 5 5 C 1.53780 * 87.08101 * 89.20290 * 4 2 1 6 6 H 1.09001 * 113.61451 * 270.80484 * 5 4 2 7 7 N 1.46500 * 113.61886 * 139.98583 * 5 4 2 8 8 S 1.65591 * 120.00361 * 146.52712 * 7 5 4 9 9 O 1.42101 * 106.40500 * 311.46049 * 8 7 5 10 10 O 1.42104 * 106.40278 * 178.54374 * 8 7 5 11 11 C 1.76195 * 107.22084 * 65.00206 * 8 7 5 12 12 C 1.38233 * 120.00186 * 89.99343 * 11 8 7 13 13 C 1.38234 * 120.00037 * 179.72636 * 12 11 8 14 14 C 1.38235 * 120.00220 * 0.28719 * 13 12 11 15 15 C 1.50700 * 120.00273 * 179.97438 * 14 13 12 16 16 O 1.42904 * 109.46813 * 299.99481 * 15 14 13 17 17 Si 1.86299 * 109.47262 * 179.97438 * 15 14 13 18 18 C 1.38238 * 119.99712 * 359.97124 * 14 13 12 19 19 C 1.38234 * 120.00028 * 359.97438 * 18 14 13 20 20 C 1.53781 * 87.17250 * 25.39281 * 5 4 2 21 21 H 1.08996 * 109.47488 * 288.80152 * 1 2 3 22 22 H 1.08998 * 109.47059 * 48.80376 * 1 2 3 23 23 H 1.08998 * 109.46865 * 168.79772 * 1 2 3 24 24 H 0.96691 * 114.00393 * 311.19910 * 3 2 1 25 25 H 1.09008 * 113.61115 * 334.65682 * 4 2 1 26 26 H 1.08999 * 113.69517 * 203.75724 * 4 2 1 27 27 H 0.96998 * 119.99441 * 326.53403 * 7 5 4 28 28 H 1.08002 * 120.00157 * 0.02562 * 12 11 8 29 29 H 1.07999 * 120.00009 * 180.25939 * 13 12 11 30 30 H 1.08992 * 109.47325 * 59.99363 * 15 14 13 31 31 H 0.96702 * 114.00005 * 299.99907 * 16 15 14 32 32 H 1.48505 * 109.99694 * 58.68029 * 17 15 14 33 33 H 1.48498 * 110.00265 * 179.97438 * 17 15 14 34 34 H 1.08002 * 119.99691 * 179.97438 * 18 14 13 35 35 H 1.07999 * 119.99968 * 179.97438 * 19 18 14 36 36 H 1.09000 * 113.61216 * 89.16229 * 20 5 4 37 37 H 1.09003 * 113.61256 * 220.05977 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0848 1.3169 0.0000 4 6 2.1460 -0.9281 1.0602 5 6 2.0951 -2.0419 0.0011 6 1 1.1601 -2.6022 0.0014 7 7 3.2770 -2.9075 0.0024 8 16 3.1280 -4.5129 -0.3751 9 8 2.0443 -5.0083 0.3991 10 8 4.4377 -5.0616 -0.3193 11 6 2.6203 -4.6078 -2.0597 12 6 3.5674 -4.6703 -3.0646 13 6 3.1690 -4.7504 -4.3858 14 6 1.8235 -4.7619 -4.7026 15 6 1.3892 -4.8487 -6.1431 16 8 1.9039 -3.7273 -6.8641 17 14 -0.4716 -4.8438 -6.2320 18 6 0.8764 -4.6940 -3.6980 19 6 1.2748 -4.6150 -2.3767 20 6 2.1467 -0.9303 -1.0603 21 1 -0.3634 0.3312 0.9728 22 1 -0.3633 0.6768 -0.7733 23 1 -0.3633 -1.0081 -0.1996 24 1 1.7014 1.9053 -0.6646 25 1 1.4939 -1.1081 1.9149 26 1 3.1585 -0.6488 1.3516 27 1 4.1468 -2.5402 0.2245 28 1 4.6187 -4.6615 -2.8172 29 1 3.9090 -4.8035 -5.1707 30 1 1.7712 -5.7698 -6.5829 31 1 1.6047 -2.8719 -6.5268 32 1 -1.0067 -3.6076 -5.6067 33 1 -0.9127 -4.9283 -7.6475 34 1 -0.1749 -4.7026 -3.9455 35 1 0.5348 -4.5615 -1.5919 36 1 3.1594 -0.6507 -1.3507 37 1 1.4952 -1.1122 -1.9150 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_40_11245586_13421422.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 23:50:26 Heat of formation + Delta-G solvation = -95.615939 kcal Electronic energy + Delta-G solvation = -22990.005101 eV Core-core repulsion = 19440.991934 eV Total energy + Delta-G solvation = -3549.013168 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 300.091 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.08206 -40.79261 -38.27659 -37.94658 -36.89427 -36.74179 -33.81161 -33.13050 -32.30650 -29.62071 -27.36639 -26.99457 -24.36543 -24.06503 -23.09785 -20.85679 -20.41715 -19.43265 -18.73072 -18.25878 -18.16047 -17.22415 -16.84672 -16.54154 -16.33253 -16.15728 -15.91709 -15.68134 -15.41105 -14.92845 -14.75302 -14.56677 -14.11796 -13.97864 -13.84705 -13.54868 -13.27917 -13.15236 -13.08201 -12.99186 -12.75492 -12.70887 -12.58761 -12.31692 -11.95432 -11.85295 -11.69871 -10.92942 -10.88103 -10.62840 -10.46435 -10.24281 -5.12386 -0.76499 -0.42824 0.08570 1.06532 1.41610 1.79039 1.81270 2.24805 2.68836 3.00345 3.11884 3.21661 3.25651 3.34300 3.36321 3.50160 3.57873 3.65441 3.68501 3.89235 4.05181 4.20003 4.26507 4.28519 4.36377 4.49695 4.51495 4.59769 4.65130 4.70455 4.81537 4.83761 4.87932 4.89923 4.98332 5.13480 5.20746 5.58834 5.77783 6.16862 6.57416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.103 3.897 3 O -0.549 6.549 4 C -0.125 4.125 5 C 0.126 3.874 6 H 0.121 0.879 7 N -1.101 6.101 8 S 2.692 3.308 9 O -0.952 6.952 10 O -0.954 6.954 11 C -0.672 4.672 12 C -0.016 4.016 13 C -0.113 4.113 14 C -0.061 4.061 15 C -0.085 4.085 16 O -0.525 6.525 17 Si 0.688 3.312 18 C -0.138 4.138 19 C -0.016 4.016 20 C -0.178 4.178 21 H 0.072 0.928 22 H 0.065 0.935 23 H 0.072 0.928 24 H 0.378 0.622 25 H 0.086 0.914 26 H 0.100 0.900 27 H 0.422 0.578 28 H 0.143 0.857 29 H 0.137 0.863 30 H 0.125 0.875 31 H 0.377 0.623 32 H -0.257 1.257 33 H -0.253 1.253 34 H 0.137 0.863 35 H 0.144 0.856 36 H 0.098 0.902 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.456 2.261 -1.664 4.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.061 3.939 3 O -0.355 6.355 4 C -0.165 4.165 5 C 0.019 3.981 6 H 0.138 0.862 7 N -0.860 5.860 8 S 2.782 3.218 9 O -0.941 6.941 10 O -0.944 6.944 11 C -0.759 4.759 12 C -0.035 4.035 13 C -0.132 4.132 14 C -0.062 4.062 15 C -0.194 4.194 16 O -0.331 6.331 17 Si 0.588 3.412 18 C -0.156 4.156 19 C -0.035 4.035 20 C -0.218 4.218 21 H 0.091 0.909 22 H 0.084 0.916 23 H 0.091 0.909 24 H 0.226 0.774 25 H 0.105 0.895 26 H 0.118 0.882 27 H 0.258 0.742 28 H 0.161 0.839 29 H 0.155 0.845 30 H 0.143 0.857 31 H 0.225 0.775 32 H -0.182 1.182 33 H -0.178 1.178 34 H 0.155 0.845 35 H 0.162 0.838 36 H 0.117 0.883 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.551 1.150 -1.311 3.956 hybrid contribution 0.423 1.710 -1.227 2.147 sum -3.129 2.860 -2.538 4.940 Atomic orbital electron populations 1.22223 0.93364 1.03310 1.03467 1.22435 0.92539 0.82323 0.96581 1.86572 1.65344 1.22395 1.61212 1.23465 1.03303 0.92679 0.97026 1.22108 0.88187 0.90158 0.97684 0.86150 1.55487 1.16392 1.28991 1.85124 1.01995 0.73731 0.72313 0.73769 1.93616 1.56012 1.77562 1.66954 1.93624 1.38241 1.75803 1.86727 1.30998 1.01823 1.18126 1.24957 1.21001 0.99271 0.91125 0.92112 1.21192 0.95625 0.99846 0.96547 1.20687 0.94343 0.95252 0.95931 1.25206 1.12062 0.92873 0.89290 1.86638 1.72625 1.16271 1.57588 0.94853 0.74174 0.88973 0.83199 1.21150 0.99292 1.02343 0.92852 1.20889 0.93825 0.91672 0.97162 1.24302 1.03180 0.96385 0.97932 0.90930 0.91555 0.90907 0.77360 0.89542 0.88187 0.74243 0.83893 0.84486 0.85693 0.77541 1.18209 1.17772 0.84544 0.83817 0.88331 0.90551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 0.53 9.32 37.15 0.35 0.88 16 2 C 0.10 -0.20 1.94 -89.72 -0.17 -0.37 16 3 O -0.55 0.29 13.50 -35.23 -0.48 -0.19 16 4 C -0.13 0.20 7.28 -25.92 -0.19 0.02 16 5 C 0.13 -0.28 4.07 -67.12 -0.27 -0.55 16 6 H 0.12 -0.38 7.28 -51.93 -0.38 -0.76 16 7 N -1.10 1.91 5.79 -4.20 -0.02 1.89 16 8 S 2.69 2.14 5.71 -107.50 -0.61 1.52 16 9 O -0.95 -3.19 16.80 -57.17 -0.96 -4.15 16 10 O -0.95 -3.63 17.28 -57.17 -0.99 -4.62 16 11 C -0.67 0.08 5.95 -39.58 -0.24 -0.16 16 12 C -0.02 0.00 9.52 -39.58 -0.38 -0.37 16 13 C -0.11 0.06 9.61 -39.58 -0.38 -0.32 16 14 C -0.06 0.07 5.39 -104.62 -0.56 -0.49 16 15 C -0.08 0.14 2.82 36.01 0.10 0.24 16 16 O -0.53 0.15 12.77 -35.23 -0.45 -0.30 16 17 Si 0.69 -1.57 29.79 -169.99 -5.06 -6.64 16 18 C -0.14 0.23 8.67 -39.58 -0.34 -0.11 16 19 C -0.02 0.02 9.52 -39.58 -0.38 -0.36 16 20 C -0.18 0.46 7.29 -25.83 -0.19 0.27 16 21 H 0.07 -0.20 8.14 -51.93 -0.42 -0.62 16 22 H 0.07 -0.26 8.14 -51.93 -0.42 -0.68 16 23 H 0.07 -0.29 7.35 -51.93 -0.38 -0.68 16 24 H 0.38 -1.51 9.04 45.56 0.41 -1.10 16 25 H 0.09 -0.17 8.10 -51.92 -0.42 -0.59 16 26 H 0.10 -0.13 8.14 -51.93 -0.42 -0.55 16 27 H 0.42 -1.31 8.93 -34.46 -0.31 -1.62 16 28 H 0.14 -0.16 7.62 -52.49 -0.40 -0.56 16 29 H 0.14 -0.18 8.06 -52.49 -0.42 -0.60 16 30 H 0.13 -0.28 7.96 -51.93 -0.41 -0.70 16 31 H 0.38 -1.20 8.70 45.56 0.40 -0.81 16 32 H -0.26 0.19 7.11 56.52 0.40 0.59 16 33 H -0.25 -0.30 7.11 56.52 0.40 0.10 16 34 H 0.14 -0.51 4.88 -52.49 -0.26 -0.77 16 35 H 0.14 -0.39 7.62 -52.49 -0.40 -0.79 16 36 H 0.10 -0.20 8.14 -51.93 -0.42 -0.62 16 37 H 0.08 -0.25 8.10 -51.93 -0.42 -0.67 16 LS Contribution 323.45 15.07 4.87 4.87 Total: 0.00 -10.15 323.45 -10.24 -20.39 By element: Atomic # 1 Polarization: -7.55 SS G_CDS: -3.88 Total: -11.43 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: -2.65 Total: -1.34 kcal Atomic # 7 Polarization: 1.91 SS G_CDS: -0.02 Total: 1.89 kcal Atomic # 8 Polarization: -6.39 SS G_CDS: -2.87 Total: -9.26 kcal Atomic # 14 Polarization: -1.57 SS G_CDS: -5.06 Total: -6.64 kcal Atomic # 16 Polarization: 2.14 SS G_CDS: -0.61 Total: 1.52 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -10.15 -10.24 -20.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_11245586_13421422.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.225 kcal (2) G-P(sol) polarization free energy of solvation -10.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds