Wall clock time and date at job start Fri Mar 5 2021 23:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42901 * 112.84909 * 2 1 4 4 C 1.53779 * 113.61836 * 131.19879 * 2 1 3 5 5 C 1.53780 * 87.08101 * 89.20290 * 4 2 1 6 6 H 1.09001 * 113.61451 * 270.80484 * 5 4 2 7 7 N 1.46500 * 113.61886 * 139.98583 * 5 4 2 8 8 S 1.65591 * 120.00361 * 146.52712 * 7 5 4 9 9 O 1.42101 * 106.40500 * 311.46049 * 8 7 5 10 10 O 1.42104 * 106.40278 * 178.54374 * 8 7 5 11 11 C 1.76195 * 107.22084 * 65.00206 * 8 7 5 12 12 C 1.38233 * 120.00186 * 89.99343 * 11 8 7 13 13 C 1.38234 * 120.00037 * 179.72636 * 12 11 8 14 14 C 1.38235 * 120.00220 * 0.28719 * 13 12 11 15 15 C 1.50700 * 120.00273 * 179.97438 * 14 13 12 16 16 O 1.42904 * 109.46813 * 299.99481 * 15 14 13 17 17 Si 1.86299 * 109.47262 * 179.97438 * 15 14 13 18 18 C 1.38238 * 119.99712 * 359.97124 * 14 13 12 19 19 C 1.38234 * 120.00028 * 359.97438 * 18 14 13 20 20 C 1.53781 * 87.17250 * 25.39281 * 5 4 2 21 21 H 1.08996 * 109.47488 * 288.80152 * 1 2 3 22 22 H 1.08998 * 109.47059 * 48.80376 * 1 2 3 23 23 H 1.08998 * 109.46865 * 168.79772 * 1 2 3 24 24 H 0.96691 * 114.00393 * 311.19910 * 3 2 1 25 25 H 1.09008 * 113.61115 * 334.65682 * 4 2 1 26 26 H 1.08999 * 113.69517 * 203.75724 * 4 2 1 27 27 H 0.96998 * 119.99441 * 326.53403 * 7 5 4 28 28 H 1.08002 * 120.00157 * 0.02562 * 12 11 8 29 29 H 1.07999 * 120.00009 * 180.25939 * 13 12 11 30 30 H 1.08992 * 109.47325 * 59.99363 * 15 14 13 31 31 H 0.96702 * 114.00005 * 299.99907 * 16 15 14 32 32 H 1.48505 * 109.99694 * 58.68029 * 17 15 14 33 33 H 1.48498 * 110.00265 * 179.97438 * 17 15 14 34 34 H 1.08002 * 119.99691 * 179.97438 * 18 14 13 35 35 H 1.07999 * 119.99968 * 179.97438 * 19 18 14 36 36 H 1.09000 * 113.61216 * 89.16229 * 20 5 4 37 37 H 1.09003 * 113.61256 * 220.05977 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0848 1.3169 0.0000 4 6 2.1460 -0.9281 1.0602 5 6 2.0951 -2.0419 0.0011 6 1 1.1601 -2.6022 0.0014 7 7 3.2770 -2.9075 0.0024 8 16 3.1280 -4.5129 -0.3751 9 8 2.0443 -5.0083 0.3991 10 8 4.4377 -5.0616 -0.3193 11 6 2.6203 -4.6078 -2.0597 12 6 3.5674 -4.6703 -3.0646 13 6 3.1690 -4.7504 -4.3858 14 6 1.8235 -4.7619 -4.7026 15 6 1.3892 -4.8487 -6.1431 16 8 1.9039 -3.7273 -6.8641 17 14 -0.4716 -4.8438 -6.2320 18 6 0.8764 -4.6940 -3.6980 19 6 1.2748 -4.6150 -2.3767 20 6 2.1467 -0.9303 -1.0603 21 1 -0.3634 0.3312 0.9728 22 1 -0.3633 0.6768 -0.7733 23 1 -0.3633 -1.0081 -0.1996 24 1 1.7014 1.9053 -0.6646 25 1 1.4939 -1.1081 1.9149 26 1 3.1585 -0.6488 1.3516 27 1 4.1468 -2.5402 0.2245 28 1 4.6187 -4.6615 -2.8172 29 1 3.9090 -4.8035 -5.1707 30 1 1.7712 -5.7698 -6.5829 31 1 1.6047 -2.8719 -6.5268 32 1 -1.0067 -3.6076 -5.6067 33 1 -0.9127 -4.9283 -7.6475 34 1 -0.1749 -4.7026 -3.9455 35 1 0.5348 -4.5615 -1.5919 36 1 3.1594 -0.6507 -1.3507 37 1 1.4952 -1.1122 -1.9150 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_11245586_13421422.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 23:50:26 Heat of formation + Delta-G solvation = -101.818528 kcal Electronic energy + Delta-G solvation = -22990.274066 eV Core-core repulsion = 19440.991934 eV Total energy + Delta-G solvation = -3549.282132 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 300.091 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.91196 -40.68644 -38.44054 -37.85821 -37.06471 -36.62771 -33.70364 -33.04859 -32.20237 -29.38049 -27.26744 -26.81794 -24.23435 -23.92903 -23.01601 -20.82017 -20.29495 -19.37726 -18.69708 -18.25106 -18.03944 -17.16935 -16.74608 -16.43393 -16.25395 -15.99297 -15.82834 -15.64665 -15.25600 -14.80600 -14.63894 -14.51537 -13.99365 -13.83507 -13.79621 -13.50584 -13.35222 -13.25809 -13.09542 -12.81671 -12.67699 -12.57353 -12.53789 -12.15861 -11.92088 -11.76209 -11.52432 -10.81012 -10.72023 -10.50629 -10.37178 -10.14645 -4.94929 -0.77902 -0.38911 0.18700 1.22390 1.55535 1.84357 1.93000 2.31489 2.67262 3.13511 3.28187 3.30744 3.42933 3.47401 3.54645 3.69214 3.74910 3.80306 3.83777 4.08145 4.19133 4.31849 4.42866 4.51828 4.52855 4.61764 4.74032 4.81365 4.83438 4.85981 4.93748 4.98033 5.02013 5.13570 5.21305 5.24012 5.40678 5.69334 5.93731 6.40308 6.86447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.101 3.899 3 O -0.571 6.571 4 C -0.135 4.135 5 C 0.124 3.876 6 H 0.133 0.867 7 N -1.094 6.094 8 S 2.708 3.292 9 O -0.979 6.979 10 O -0.989 6.989 11 C -0.675 4.675 12 C -0.027 4.027 13 C -0.122 4.122 14 C -0.061 4.061 15 C -0.092 4.092 16 O -0.544 6.544 17 Si 0.765 3.235 18 C -0.137 4.137 19 C -0.021 4.021 20 C -0.171 4.171 21 H 0.066 0.934 22 H 0.075 0.925 23 H 0.084 0.916 24 H 0.391 0.609 25 H 0.088 0.912 26 H 0.092 0.908 27 H 0.428 0.572 28 H 0.145 0.855 29 H 0.141 0.859 30 H 0.130 0.870 31 H 0.388 0.612 32 H -0.271 1.271 33 H -0.303 1.303 34 H 0.160 0.840 35 H 0.161 0.839 36 H 0.091 0.909 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.495 2.469 -2.026 5.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.059 3.941 3 O -0.380 6.380 4 C -0.174 4.174 5 C 0.016 3.984 6 H 0.151 0.849 7 N -0.854 5.854 8 S 2.800 3.200 9 O -0.969 6.969 10 O -0.979 6.979 11 C -0.764 4.764 12 C -0.047 4.047 13 C -0.141 4.141 14 C -0.062 4.062 15 C -0.200 4.200 16 O -0.352 6.352 17 Si 0.669 3.331 18 C -0.155 4.155 19 C -0.040 4.040 20 C -0.211 4.211 21 H 0.085 0.915 22 H 0.094 0.906 23 H 0.103 0.897 24 H 0.241 0.759 25 H 0.107 0.893 26 H 0.110 0.890 27 H 0.265 0.735 28 H 0.163 0.837 29 H 0.159 0.841 30 H 0.148 0.852 31 H 0.238 0.762 32 H -0.197 1.197 33 H -0.232 1.232 34 H 0.177 0.823 35 H 0.179 0.821 36 H 0.110 0.890 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.566 1.367 -1.635 5.039 hybrid contribution 0.738 1.699 -1.186 2.199 sum -3.828 3.067 -2.820 5.658 Atomic orbital electron populations 1.22234 0.92283 1.04287 1.03500 1.22527 0.93301 0.81801 0.96459 1.86530 1.66109 1.23266 1.62065 1.23537 1.03053 0.93304 0.97516 1.22277 0.88289 0.90090 0.97695 0.84927 1.55264 1.17090 1.28073 1.84980 1.01208 0.72446 0.72454 0.73854 1.93574 1.56593 1.78559 1.68171 1.93572 1.39909 1.77046 1.87422 1.30783 1.02497 1.19215 1.23869 1.21112 0.99573 0.91569 0.92402 1.21306 0.96232 1.00106 0.96454 1.20781 0.94229 0.94866 0.96293 1.25405 1.12826 0.92845 0.88962 1.86608 1.73186 1.17243 1.58172 0.93983 0.72083 0.87276 0.79711 1.21395 1.00316 1.01461 0.92372 1.21175 0.93674 0.91129 0.98041 1.24236 1.03041 0.95756 0.98088 0.91524 0.90640 0.89748 0.75872 0.89332 0.88968 0.73515 0.83684 0.84134 0.85198 0.76250 1.19669 1.23159 0.82339 0.82117 0.89002 0.89310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 1.21 9.32 71.98 0.67 1.88 16 2 C 0.10 -0.42 1.94 -10.21 -0.02 -0.44 16 3 O -0.57 0.57 13.50 -148.98 -2.01 -1.44 16 4 C -0.13 0.41 7.28 31.12 0.23 0.63 16 5 C 0.12 -0.58 4.07 45.52 0.19 -0.39 16 6 H 0.13 -0.96 7.28 -2.39 -0.02 -0.98 16 7 N -1.09 3.35 5.79 -167.20 -0.97 2.38 16 8 S 2.71 5.96 5.71 -56.49 -0.32 5.64 16 9 O -0.98 -6.93 16.80 -128.00 -2.15 -9.08 16 10 O -0.99 -8.81 17.28 -128.00 -2.21 -11.02 16 11 C -0.67 0.21 5.95 22.27 0.13 0.34 16 12 C -0.03 0.00 9.52 22.27 0.21 0.21 16 13 C -0.12 0.15 9.61 22.27 0.21 0.36 16 14 C -0.06 0.19 5.39 -19.87 -0.11 0.08 16 15 C -0.09 0.37 2.82 71.24 0.20 0.57 16 16 O -0.54 0.54 12.77 -148.98 -1.90 -1.36 16 17 Si 0.77 -4.16 29.79 68.60 2.04 -2.12 16 18 C -0.14 0.67 8.67 22.27 0.19 0.86 16 19 C -0.02 0.07 9.52 22.27 0.21 0.28 16 20 C -0.17 0.97 7.29 31.18 0.23 1.20 16 21 H 0.07 -0.39 8.14 -2.39 -0.02 -0.41 16 22 H 0.07 -0.68 8.14 -2.39 -0.02 -0.70 16 23 H 0.08 -0.81 7.35 -2.39 -0.02 -0.83 16 24 H 0.39 -3.17 9.04 -74.06 -0.67 -3.84 16 25 H 0.09 -0.33 8.10 -2.38 -0.02 -0.35 16 26 H 0.09 -0.15 8.14 -2.39 -0.02 -0.17 16 27 H 0.43 -2.31 8.93 -96.75 -0.86 -3.18 16 28 H 0.15 -0.19 7.62 -2.91 -0.02 -0.21 16 29 H 0.14 -0.35 8.06 -2.91 -0.02 -0.37 16 30 H 0.13 -0.67 7.96 -2.39 -0.02 -0.69 16 31 H 0.39 -2.71 8.70 -74.06 -0.64 -3.35 16 32 H -0.27 0.85 7.11 99.48 0.71 1.55 16 33 H -0.30 -0.94 7.11 99.48 0.71 -0.23 16 34 H 0.16 -1.56 4.88 -2.91 -0.01 -1.57 16 35 H 0.16 -1.13 7.62 -2.91 -0.02 -1.15 16 36 H 0.09 -0.38 8.14 -2.39 -0.02 -0.40 16 37 H 0.09 -0.71 8.10 -2.39 -0.02 -0.73 16 Total: 0.00 -22.84 323.45 -6.19 -29.03 By element: Atomic # 1 Polarization: -16.59 SS G_CDS: -1.02 Total: -17.61 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: 2.35 Total: 5.59 kcal Atomic # 7 Polarization: 3.35 SS G_CDS: -0.97 Total: 2.38 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: -8.28 Total: -22.91 kcal Atomic # 14 Polarization: -4.16 SS G_CDS: 2.04 Total: -2.12 kcal Atomic # 16 Polarization: 5.96 SS G_CDS: -0.32 Total: 5.64 kcal Total: -22.84 -6.19 -29.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_11245586_13421422.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.786 kcal (2) G-P(sol) polarization free energy of solvation -22.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds