Wall clock time and date at job start Fri Mar 5 2021 23:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42904 * 112.84558 * 2 1 4 4 C 1.53779 * 113.61058 * 131.19150 * 2 1 3 5 5 C 1.53787 * 87.07934 * 89.20569 * 4 2 1 6 6 H 1.08996 * 113.60984 * 270.79320 * 5 4 2 7 7 N 1.46501 * 113.61521 * 139.97853 * 5 4 2 8 8 S 1.65597 * 120.00095 * 144.99433 * 7 5 4 9 9 O 1.42105 * 106.40506 * 311.46495 * 8 7 5 10 10 O 1.42093 * 106.40441 * 178.54083 * 8 7 5 11 11 C 1.76210 * 107.21483 * 65.00199 * 8 7 5 12 12 C 1.33384 * 125.20332 * 150.00141 * 11 8 7 13 13 C 1.50705 * 122.53849 * 359.97438 * 12 11 8 14 14 O 1.42894 * 109.47171 * 285.00444 * 13 12 11 15 15 Si 1.86298 * 109.46780 * 164.99885 * 13 12 11 16 16 C 1.38422 * 114.92254 * 180.24875 * 12 11 8 17 17 C 1.33388 * 114.91730 * 359.49346 * 16 12 11 18 18 S 1.75887 * 109.59657 * 0.47519 * 17 16 12 19 19 C 1.53773 * 113.69422 * 228.73018 * 2 1 3 20 20 H 1.09000 * 109.47570 * 288.80708 * 1 2 3 21 21 H 1.09005 * 109.47015 * 48.81242 * 1 2 3 22 22 H 1.09001 * 109.47270 * 168.80263 * 1 2 3 23 23 H 0.96697 * 113.99732 * 311.18628 * 3 2 1 24 24 H 1.08992 * 113.61674 * 334.65053 * 4 2 1 25 25 H 1.09007 * 113.61201 * 203.75168 * 4 2 1 26 26 H 0.97005 * 119.99994 * 325.00024 * 7 5 4 27 27 H 1.09004 * 109.46779 * 45.00767 * 13 12 11 28 28 H 0.96709 * 113.99337 * 180.02562 * 14 13 12 29 29 H 1.48506 * 109.99834 * 60.00830 * 15 13 12 30 30 H 1.48502 * 110.00011 * 181.32094 * 15 13 12 31 31 H 1.08004 * 122.54175 * 179.72749 * 16 12 11 32 32 H 1.08007 * 125.20485 * 180.21214 * 17 16 12 33 33 H 1.08995 * 113.61925 * 156.32608 * 19 2 1 34 34 H 1.09003 * 113.61732 * 25.42052 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0848 1.3169 0.0000 4 6 2.1459 -0.9280 1.0603 5 6 2.0950 -2.0420 0.0013 6 1 1.1601 -2.6023 0.0017 7 7 3.2770 -2.9075 0.0028 8 16 3.1223 -4.5208 -0.3374 9 8 2.0509 -4.9991 0.4642 10 8 4.4327 -5.0682 -0.2904 11 6 2.5881 -4.6518 -2.0115 12 6 2.8706 -5.6650 -2.8317 13 6 3.7040 -6.8457 -2.4044 14 8 5.0790 -6.4613 -2.3440 15 14 3.4991 -8.2286 -3.6358 16 6 2.3454 -5.5470 -4.1070 17 6 1.6274 -4.4430 -4.3191 18 16 1.6002 -3.4668 -2.8562 19 6 2.1479 -0.9288 -1.0584 20 1 -0.3634 0.3313 0.9728 21 1 -0.3633 0.6768 -0.7734 22 1 -0.3634 -1.0081 -0.1996 23 1 1.7014 1.9052 -0.6648 24 1 1.4939 -1.1078 1.9150 25 1 3.1585 -0.6476 1.3508 26 1 4.1502 -2.5356 0.2031 27 1 3.3777 -7.1837 -1.4208 28 1 5.6751 -7.1739 -2.0752 29 1 3.9406 -7.7804 -4.9810 30 1 4.2909 -9.4102 -3.2090 31 1 2.5017 -6.2941 -4.8711 32 1 1.1410 -4.1856 -5.2484 33 1 3.1609 -0.6487 -1.3472 34 1 1.4974 -1.1094 -1.9141 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_40_11245586_13652106.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 23:50:30 Heat of formation + Delta-G solvation = -78.037073 kcal Electronic energy + Delta-G solvation = -22017.637556 eV Core-core repulsion = 18558.538911 eV Total energy + Delta-G solvation = -3459.098644 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 306.047 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.08523 -39.92394 -38.07460 -37.15834 -36.76641 -36.72799 -33.80314 -31.50749 -29.58953 -28.03899 -27.02476 -24.22670 -24.19377 -21.67311 -20.46141 -19.96001 -19.55600 -18.59136 -18.19975 -18.06306 -17.26630 -17.00050 -16.25522 -16.19400 -15.97668 -15.66708 -15.36932 -14.78269 -14.55821 -14.26070 -14.20207 -14.03689 -13.65417 -13.49757 -13.23372 -13.02454 -12.98505 -12.93881 -12.68364 -12.63868 -12.49065 -12.34931 -12.24726 -11.73619 -11.56721 -10.84919 -10.64513 -10.50851 -10.38407 -9.66008 -5.03779 -0.72788 -0.56764 0.22365 0.58342 1.15149 1.21487 1.53602 1.86016 1.91977 2.64735 3.03382 3.19919 3.26967 3.37235 3.48573 3.58871 3.64835 3.79581 3.84814 3.92853 4.10594 4.19128 4.29238 4.37237 4.55004 4.61474 4.65335 4.68564 4.84794 4.87094 4.92728 5.00649 5.03441 5.22619 5.80859 6.49892 6.60752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.105 3.895 3 O -0.549 6.549 4 C -0.124 4.124 5 C 0.117 3.883 6 H 0.122 0.878 7 N -1.101 6.101 8 S 2.711 3.289 9 O -0.948 6.948 10 O -0.926 6.926 11 C -0.769 4.769 12 C 0.054 3.946 13 C -0.088 4.088 14 O -0.507 6.507 15 Si 0.695 3.305 16 C -0.159 4.159 17 C -0.166 4.166 18 S 0.204 5.796 19 C -0.180 4.180 20 H 0.072 0.928 21 H 0.067 0.933 22 H 0.073 0.927 23 H 0.379 0.621 24 H 0.087 0.913 25 H 0.101 0.899 26 H 0.424 0.576 27 H 0.074 0.926 28 H 0.383 0.617 29 H -0.249 1.249 30 H -0.253 1.253 31 H 0.156 0.844 32 H 0.179 0.821 33 H 0.103 0.897 34 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.256 1.675 -3.244 5.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.063 3.937 3 O -0.355 6.355 4 C -0.163 4.163 5 C 0.009 3.991 6 H 0.139 0.861 7 N -0.860 5.860 8 S 2.795 3.205 9 O -0.938 6.938 10 O -0.916 6.916 11 C -0.968 4.968 12 C 0.037 3.963 13 C -0.200 4.200 14 O -0.314 6.314 15 Si 0.594 3.406 16 C -0.189 4.189 17 C -0.303 4.303 18 S 0.471 5.529 19 C -0.220 4.220 20 H 0.091 0.909 21 H 0.086 0.914 22 H 0.092 0.908 23 H 0.227 0.773 24 H 0.105 0.895 25 H 0.119 0.881 26 H 0.260 0.740 27 H 0.092 0.908 28 H 0.232 0.768 29 H -0.173 1.173 30 H -0.177 1.177 31 H 0.173 0.827 32 H 0.196 0.804 33 H 0.121 0.879 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.459 2.097 -2.642 5.591 hybrid contribution 1.515 -0.578 -1.077 1.946 sum -2.944 1.519 -3.718 4.980 Atomic orbital electron populations 1.22240 0.93272 1.03431 1.03549 1.22381 0.92588 0.82313 0.96379 1.86575 1.65347 1.22339 1.61196 1.23460 1.03392 0.92449 0.96988 1.22214 0.88229 0.90466 0.98227 0.86072 1.55498 1.16152 1.28437 1.85957 1.01687 0.74166 0.72184 0.72458 1.93645 1.57408 1.78000 1.64707 1.93681 1.36907 1.75220 1.85804 1.35666 1.21929 1.08735 1.30518 1.17933 0.93202 0.93062 0.92111 1.24803 0.85006 1.02011 1.08150 1.86662 1.14120 1.39806 1.90846 0.95003 0.91660 0.75980 0.77930 1.20276 1.01417 1.00202 0.96973 1.26168 1.02860 0.98114 1.03149 1.84068 1.46920 1.19399 1.02518 1.24372 1.03570 0.96243 0.97863 0.90882 0.91405 0.90831 0.77316 0.89465 0.88074 0.73957 0.90756 0.76822 1.17325 1.17744 0.82700 0.80392 0.87900 0.90168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 0.49 9.32 37.16 0.35 0.84 16 2 C 0.11 -0.17 1.94 -89.81 -0.17 -0.34 16 3 O -0.55 0.23 13.49 -35.23 -0.48 -0.25 16 4 C -0.12 0.13 7.29 -25.92 -0.19 -0.06 16 5 C 0.12 -0.12 2.94 -67.11 -0.20 -0.32 16 6 H 0.12 -0.19 7.29 -51.93 -0.38 -0.57 16 7 N -1.10 0.21 5.79 -4.20 -0.02 0.18 16 8 S 2.71 7.29 5.38 -107.50 -0.58 6.72 16 9 O -0.95 -4.84 17.54 -57.17 -1.00 -5.84 16 10 O -0.93 -4.63 15.11 -65.82 -0.99 -5.62 16 11 C -0.77 -1.52 6.48 29.04 0.19 -1.33 16 12 C 0.05 0.11 5.16 -106.25 -0.55 -0.44 16 13 C -0.09 -0.15 1.86 36.01 0.07 -0.08 16 14 O -0.51 -1.54 11.02 -56.06 -0.62 -2.15 16 15 Si 0.70 -0.42 30.43 -169.99 -5.17 -5.59 16 16 C -0.16 -0.02 8.74 -41.21 -0.36 -0.38 16 17 C -0.17 0.20 11.23 29.04 0.33 0.53 16 18 S 0.20 -0.16 19.58 -107.50 -2.11 -2.26 16 19 C -0.18 0.37 6.40 -25.92 -0.17 0.20 16 20 H 0.07 -0.18 8.14 -51.93 -0.42 -0.61 16 21 H 0.07 -0.26 8.14 -51.93 -0.42 -0.69 16 22 H 0.07 -0.26 7.35 -51.93 -0.38 -0.65 16 23 H 0.38 -1.52 9.04 45.56 0.41 -1.11 16 24 H 0.09 -0.13 8.10 -51.93 -0.42 -0.55 16 25 H 0.10 -0.08 8.14 -51.92 -0.42 -0.50 16 26 H 0.42 -0.74 8.94 -34.47 -0.31 -1.05 16 27 H 0.07 0.07 7.60 -51.93 -0.39 -0.32 16 28 H 0.38 -0.24 8.74 45.56 0.40 0.15 16 29 H -0.25 -0.34 6.86 56.52 0.39 0.05 16 30 H -0.25 -0.30 7.11 56.52 0.40 0.10 16 31 H 0.16 -0.24 5.57 -52.48 -0.29 -0.53 16 32 H 0.18 -0.75 8.06 -52.48 -0.42 -1.17 16 33 H 0.10 -0.17 8.14 -51.93 -0.42 -0.59 16 34 H 0.08 -0.25 6.44 -51.93 -0.33 -0.59 16 LS Contribution 303.36 15.07 4.57 4.57 Total: 0.00 -10.14 303.36 -10.13 -20.27 By element: Atomic # 1 Polarization: -5.60 SS G_CDS: -3.03 Total: -8.62 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: -0.71 Total: -1.40 kcal Atomic # 7 Polarization: 0.21 SS G_CDS: -0.02 Total: 0.18 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: -3.09 Total: -13.86 kcal Atomic # 14 Polarization: -0.42 SS G_CDS: -5.17 Total: -5.59 kcal Atomic # 16 Polarization: 7.14 SS G_CDS: -2.68 Total: 4.45 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -10.14 -10.13 -20.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_11245586_13652106.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.768 kcal (2) G-P(sol) polarization free energy of solvation -10.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds