Wall clock time and date at job start Fri Mar 5 2021 23:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42904 * 112.84558 * 2 1 4 4 C 1.53779 * 113.61058 * 131.19150 * 2 1 3 5 5 C 1.53787 * 87.07934 * 89.20569 * 4 2 1 6 6 H 1.08996 * 113.60984 * 270.79320 * 5 4 2 7 7 N 1.46501 * 113.61521 * 139.97853 * 5 4 2 8 8 S 1.65597 * 120.00095 * 144.99433 * 7 5 4 9 9 O 1.42105 * 106.40506 * 311.46495 * 8 7 5 10 10 O 1.42093 * 106.40441 * 178.54083 * 8 7 5 11 11 C 1.76210 * 107.21483 * 65.00199 * 8 7 5 12 12 C 1.33384 * 125.20332 * 150.00141 * 11 8 7 13 13 C 1.50705 * 122.53849 * 359.97438 * 12 11 8 14 14 O 1.42894 * 109.47171 * 285.00444 * 13 12 11 15 15 Si 1.86298 * 109.46780 * 164.99885 * 13 12 11 16 16 C 1.38422 * 114.92254 * 180.24875 * 12 11 8 17 17 C 1.33388 * 114.91730 * 359.49346 * 16 12 11 18 18 S 1.75887 * 109.59657 * 0.47519 * 17 16 12 19 19 C 1.53773 * 113.69422 * 228.73018 * 2 1 3 20 20 H 1.09000 * 109.47570 * 288.80708 * 1 2 3 21 21 H 1.09005 * 109.47015 * 48.81242 * 1 2 3 22 22 H 1.09001 * 109.47270 * 168.80263 * 1 2 3 23 23 H 0.96697 * 113.99732 * 311.18628 * 3 2 1 24 24 H 1.08992 * 113.61674 * 334.65053 * 4 2 1 25 25 H 1.09007 * 113.61201 * 203.75168 * 4 2 1 26 26 H 0.97005 * 119.99994 * 325.00024 * 7 5 4 27 27 H 1.09004 * 109.46779 * 45.00767 * 13 12 11 28 28 H 0.96709 * 113.99337 * 180.02562 * 14 13 12 29 29 H 1.48506 * 109.99834 * 60.00830 * 15 13 12 30 30 H 1.48502 * 110.00011 * 181.32094 * 15 13 12 31 31 H 1.08004 * 122.54175 * 179.72749 * 16 12 11 32 32 H 1.08007 * 125.20485 * 180.21214 * 17 16 12 33 33 H 1.08995 * 113.61925 * 156.32608 * 19 2 1 34 34 H 1.09003 * 113.61732 * 25.42052 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0848 1.3169 0.0000 4 6 2.1459 -0.9280 1.0603 5 6 2.0950 -2.0420 0.0013 6 1 1.1601 -2.6023 0.0017 7 7 3.2770 -2.9075 0.0028 8 16 3.1223 -4.5208 -0.3374 9 8 2.0509 -4.9991 0.4642 10 8 4.4327 -5.0682 -0.2904 11 6 2.5881 -4.6518 -2.0115 12 6 2.8706 -5.6650 -2.8317 13 6 3.7040 -6.8457 -2.4044 14 8 5.0790 -6.4613 -2.3440 15 14 3.4991 -8.2286 -3.6358 16 6 2.3454 -5.5470 -4.1070 17 6 1.6274 -4.4430 -4.3191 18 16 1.6002 -3.4668 -2.8562 19 6 2.1479 -0.9288 -1.0584 20 1 -0.3634 0.3313 0.9728 21 1 -0.3633 0.6768 -0.7734 22 1 -0.3634 -1.0081 -0.1996 23 1 1.7014 1.9052 -0.6648 24 1 1.4939 -1.1078 1.9150 25 1 3.1585 -0.6476 1.3508 26 1 4.1502 -2.5356 0.2031 27 1 3.3777 -7.1837 -1.4208 28 1 5.6751 -7.1739 -2.0752 29 1 3.9406 -7.7804 -4.9810 30 1 4.2909 -9.4102 -3.2090 31 1 2.5017 -6.2941 -4.8711 32 1 1.1410 -4.1856 -5.2484 33 1 3.1609 -0.6487 -1.3472 34 1 1.4974 -1.1094 -1.9141 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_11245586_13652106.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 23:50:29 Heat of formation + Delta-G solvation = -84.602711 kcal Electronic energy + Delta-G solvation = -22017.922263 eV Core-core repulsion = 18558.538911 eV Total energy + Delta-G solvation = -3459.383352 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 306.047 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.97302 -39.93064 -38.34793 -37.27151 -37.03423 -36.66854 -33.77642 -31.48932 -29.39368 -28.10050 -26.90464 -24.17323 -24.13907 -21.74635 -20.37632 -20.03333 -19.58403 -18.72493 -18.22840 -18.07020 -17.28529 -17.01712 -16.27718 -16.17546 -15.99704 -15.70384 -15.26743 -14.74125 -14.57948 -14.26440 -14.20533 -13.91931 -13.68136 -13.51032 -13.30672 -13.24312 -13.11787 -12.89392 -12.69226 -12.61421 -12.52646 -12.41882 -12.16818 -11.69471 -11.48614 -10.72152 -10.61820 -10.57537 -10.38226 -9.60183 -4.99465 -0.83303 -0.63326 0.23227 0.65047 1.15529 1.23208 1.56133 1.82905 1.86863 2.48383 3.15189 3.22582 3.36934 3.47919 3.49746 3.65628 3.76332 3.78630 3.86541 4.01281 4.14872 4.26652 4.46245 4.50282 4.70032 4.72601 4.79634 4.83783 4.92332 5.00169 5.07138 5.12625 5.19666 5.37658 5.85709 6.51206 6.88991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.107 3.893 3 O -0.569 6.569 4 C -0.132 4.132 5 C 0.110 3.890 6 H 0.126 0.874 7 N -1.094 6.094 8 S 2.722 3.278 9 O -0.980 6.980 10 O -0.958 6.958 11 C -0.798 4.798 12 C 0.039 3.961 13 C -0.117 4.117 14 O -0.531 6.531 15 Si 0.787 3.213 16 C -0.178 4.178 17 C -0.154 4.154 18 S 0.236 5.764 19 C -0.174 4.174 20 H 0.067 0.933 21 H 0.081 0.919 22 H 0.081 0.919 23 H 0.393 0.607 24 H 0.089 0.911 25 H 0.095 0.905 26 H 0.430 0.570 27 H 0.071 0.929 28 H 0.393 0.607 29 H -0.271 1.271 30 H -0.280 1.280 31 H 0.170 0.830 32 H 0.213 0.787 33 H 0.099 0.901 34 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.451 2.324 -4.771 7.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.065 3.935 3 O -0.377 6.377 4 C -0.172 4.172 5 C 0.002 3.998 6 H 0.144 0.856 7 N -0.856 5.856 8 S 2.809 3.191 9 O -0.970 6.970 10 O -0.948 6.948 11 C -1.000 5.000 12 C 0.021 3.979 13 C -0.226 4.226 14 O -0.340 6.340 15 Si 0.687 3.313 16 C -0.207 4.207 17 C -0.291 4.291 18 S 0.503 5.497 19 C -0.214 4.214 20 H 0.086 0.914 21 H 0.100 0.900 22 H 0.100 0.900 23 H 0.243 0.757 24 H 0.107 0.893 25 H 0.113 0.887 26 H 0.268 0.732 27 H 0.089 0.911 28 H 0.243 0.757 29 H -0.197 1.197 30 H -0.206 1.206 31 H 0.188 0.812 32 H 0.229 0.771 33 H 0.117 0.883 34 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.652 2.773 -4.126 7.528 hybrid contribution 1.883 -0.694 -0.601 2.095 sum -3.770 2.079 -4.728 6.394 Atomic orbital electron populations 1.22262 0.92136 1.04307 1.03816 1.22409 0.93338 0.81860 0.95897 1.86534 1.66064 1.23038 1.62092 1.23535 1.03297 0.92917 0.97442 1.22399 0.87941 0.90457 0.98958 0.85591 1.55282 1.16953 1.27462 1.85859 1.00942 0.73042 0.72507 0.72612 1.93597 1.58103 1.79069 1.66197 1.93632 1.38230 1.76407 1.86517 1.35487 1.23858 1.10417 1.30191 1.18230 0.93434 0.93146 0.93095 1.25315 0.84412 1.03546 1.09331 1.86611 1.15082 1.41215 1.91114 0.93949 0.89985 0.72628 0.74732 1.20439 1.02221 1.01453 0.96548 1.26657 1.01409 0.97039 1.04005 1.83859 1.45454 1.18255 1.02141 1.24328 1.03693 0.95340 0.98007 0.91373 0.90042 0.90046 0.75660 0.89283 0.88662 0.73190 0.91133 0.75675 1.19690 1.20634 0.81248 0.77051 0.88260 0.88722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 1.13 9.32 71.98 0.67 1.80 16 2 C 0.11 -0.38 1.94 -10.27 -0.02 -0.40 16 3 O -0.57 0.62 13.49 -148.98 -2.01 -1.39 16 4 C -0.13 0.20 7.29 31.12 0.23 0.42 16 5 C 0.11 -0.20 2.94 45.52 0.13 -0.06 16 6 H 0.13 -0.37 7.29 -2.39 -0.02 -0.38 16 7 N -1.09 -0.88 5.79 -167.19 -0.97 -1.85 16 8 S 2.72 19.34 5.38 -56.49 -0.30 19.04 16 9 O -0.98 -11.88 17.54 -128.00 -2.25 -14.13 16 10 O -0.96 -11.87 15.11 -119.73 -1.81 -13.68 16 11 C -0.80 -3.67 6.48 66.72 0.43 -3.24 16 12 C 0.04 0.18 5.16 -20.92 -0.11 0.07 16 13 C -0.12 -0.54 1.86 71.24 0.13 -0.41 16 14 O -0.53 -4.16 11.02 -129.06 -1.42 -5.59 16 15 Si 0.79 -0.83 30.43 68.60 2.09 1.25 16 16 C -0.18 0.10 8.74 21.22 0.19 0.28 16 17 C -0.15 0.67 11.23 66.72 0.75 1.42 16 18 S 0.24 -0.61 19.58 -56.49 -1.11 -1.71 16 19 C -0.17 0.78 6.40 31.12 0.20 0.98 16 20 H 0.07 -0.37 8.14 -2.39 -0.02 -0.39 16 21 H 0.08 -0.76 8.14 -2.38 -0.02 -0.78 16 22 H 0.08 -0.67 7.35 -2.39 -0.02 -0.69 16 23 H 0.39 -3.40 9.04 -74.06 -0.67 -4.07 16 24 H 0.09 -0.20 8.10 -2.39 -0.02 -0.22 16 25 H 0.09 -0.05 8.14 -2.38 -0.02 -0.07 16 26 H 0.43 -0.87 8.94 -96.74 -0.87 -1.73 16 27 H 0.07 0.29 7.60 -2.38 -0.02 0.28 16 28 H 0.39 0.32 8.74 -74.05 -0.65 -0.33 16 29 H -0.27 -0.65 6.86 99.48 0.68 0.03 16 30 H -0.28 -0.84 7.11 99.48 0.71 -0.13 16 31 H 0.17 -0.72 5.57 -2.91 -0.02 -0.74 16 32 H 0.21 -2.49 8.06 -2.91 -0.02 -2.52 16 33 H 0.10 -0.35 8.14 -2.39 -0.02 -0.36 16 34 H 0.09 -0.72 6.44 -2.39 -0.02 -0.74 16 Total: 0.00 -23.83 303.36 -6.17 -30.01 By element: Atomic # 1 Polarization: -11.84 SS G_CDS: -1.00 Total: -12.84 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: 2.60 Total: 0.87 kcal Atomic # 7 Polarization: -0.88 SS G_CDS: -0.97 Total: -1.85 kcal Atomic # 8 Polarization: -27.29 SS G_CDS: -7.49 Total: -34.78 kcal Atomic # 14 Polarization: -0.83 SS G_CDS: 2.09 Total: 1.25 kcal Atomic # 16 Polarization: 18.74 SS G_CDS: -1.41 Total: 17.33 kcal Total: -23.83 -6.17 -30.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_11245586_13652106.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.596 kcal (2) G-P(sol) polarization free energy of solvation -23.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds