Wall clock time and date at job start Fri Mar 5 2021 23:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42901 * 112.85046 * 2 1 4 4 C 1.53788 * 113.61405 * 131.19596 * 2 1 3 5 5 C 1.53776 * 87.08141 * 89.11848 * 4 2 1 6 6 H 1.09011 * 113.61082 * 270.80216 * 5 4 2 7 7 N 1.46499 * 113.61676 * 139.98638 * 5 4 2 8 8 S 1.65596 * 120.00275 * 131.15262 * 7 5 4 9 9 O 1.42097 * 106.40334 * 307.89213 * 8 7 5 10 10 O 1.42098 * 106.40108 * 174.97463 * 8 7 5 11 11 C 1.76206 * 107.21924 * 61.43333 * 8 7 5 12 12 C 1.33387 * 122.53530 * 165.14033 * 11 8 7 13 13 C 1.50691 * 125.20822 * 0.02562 * 12 11 8 14 14 O 1.42903 * 109.47018 * 39.61703 * 13 12 11 15 15 Si 1.86306 * 109.47114 * 159.60952 * 13 12 11 16 16 S 1.75894 * 109.58692 * 179.75227 * 12 11 8 17 17 C 1.75884 * 90.97016 * 0.22750 * 16 12 11 18 18 C 1.33381 * 109.59525 * 0.02562 * 17 16 12 19 19 C 1.53782 * 87.08335 * 25.43350 * 5 4 2 20 20 H 1.08997 * 109.46600 * 288.80319 * 1 2 3 21 21 H 1.08998 * 109.46872 * 48.80411 * 1 2 3 22 22 H 1.08997 * 109.47144 * 168.80315 * 1 2 3 23 23 H 0.96691 * 114.00183 * 311.19228 * 3 2 1 24 24 H 1.09000 * 113.61364 * 334.56455 * 4 2 1 25 25 H 1.09000 * 113.61239 * 203.66370 * 4 2 1 26 26 H 0.96994 * 119.99468 * 311.14865 * 7 5 4 27 27 H 1.08990 * 109.47190 * 279.61258 * 13 12 11 28 28 H 0.96694 * 114.00409 * 63.77163 * 14 13 12 29 29 H 1.48500 * 109.99960 * 58.68458 * 15 13 12 30 30 H 1.48496 * 109.99745 * 180.02562 * 15 13 12 31 31 H 1.08000 * 125.20017 * 179.97438 * 17 16 12 32 32 H 1.08006 * 122.54054 * 179.97438 * 18 17 16 33 33 H 1.08988 * 113.61340 * 89.11975 * 19 5 4 34 34 H 1.09002 * 113.61543 * 220.02603 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0849 1.3169 0.0000 4 6 2.1460 -0.9281 1.0603 5 6 2.0930 -2.0425 0.0020 6 1 1.1574 -2.6019 0.0035 7 7 3.2740 -2.9094 0.0029 8 16 3.0930 -4.5554 0.0069 9 8 2.2180 -4.8603 1.0842 10 8 4.3988 -5.1030 -0.1124 11 6 2.2346 -4.9894 -1.4694 12 6 2.1764 -6.2422 -1.9236 13 6 2.8153 -7.4364 -1.2629 14 8 2.6665 -7.3328 0.1546 15 14 1.9877 -8.9943 -1.8619 16 16 1.2332 -6.2883 -3.4075 17 6 0.9689 -4.5512 -3.3288 18 6 1.5728 -4.0554 -2.2478 19 6 2.1461 -0.9301 -1.0584 20 1 -0.3632 0.3312 0.9728 21 1 -0.3633 0.6769 -0.7733 22 1 -0.3633 -1.0081 -0.1995 23 1 1.7016 1.9052 -0.6647 24 1 1.4945 -1.1068 1.9157 25 1 3.1591 -0.6486 1.3496 26 1 4.1620 -2.5191 0.0011 27 1 3.8751 -7.4677 -1.5156 28 1 1.7482 -7.3580 0.4566 29 1 2.1077 -9.0977 -3.3384 30 1 2.6084 -10.1792 -1.2171 31 1 0.4046 -3.9742 -4.0464 32 1 1.5442 -3.0053 -1.9966 33 1 3.1591 -0.6513 -1.3483 34 1 1.4946 -1.1105 -1.9134 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_11245586_14772022.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 23:50:32 Heat of formation + Delta-G solvation = -88.280294 kcal Electronic energy + Delta-G solvation = -22162.111567 eV Core-core repulsion = 18702.568743 eV Total energy + Delta-G solvation = -3459.542824 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 306.047 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.99306 -39.69581 -38.24493 -37.78451 -36.87064 -36.59708 -33.72866 -31.84969 -29.36416 -27.62146 -26.92218 -24.59900 -24.00305 -21.74491 -20.58689 -20.25832 -19.38231 -18.45367 -18.14938 -17.84397 -17.15528 -16.94822 -16.59324 -16.11752 -16.06277 -15.54695 -15.25999 -15.09344 -14.60207 -14.37154 -14.13480 -13.97455 -13.77665 -13.50539 -13.23948 -13.13801 -13.10946 -12.82860 -12.74840 -12.68075 -12.56265 -12.19307 -12.07413 -11.62507 -11.47836 -11.05566 -10.70997 -10.53837 -10.18290 -9.78234 -5.18504 -0.76846 -0.54116 0.31930 0.62844 1.02718 1.13026 1.47224 1.80183 1.91636 2.64562 3.11648 3.23080 3.29124 3.38760 3.51816 3.60102 3.68610 3.81032 3.98794 4.06413 4.10276 4.26770 4.50524 4.52822 4.60924 4.75504 4.82913 4.85469 4.87370 5.03123 5.11123 5.15606 5.22610 5.41499 5.90528 6.37907 6.90914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.104 3.896 3 O -0.571 6.571 4 C -0.144 4.144 5 C 0.118 3.882 6 H 0.133 0.867 7 N -1.099 6.099 8 S 2.727 3.273 9 O -0.970 6.970 10 O -0.989 6.989 11 C -0.668 4.668 12 C -0.119 4.119 13 C -0.093 4.093 14 O -0.553 6.553 15 Si 0.760 3.240 16 S 0.179 5.821 17 C -0.201 4.201 18 C -0.107 4.107 19 C -0.171 4.171 20 H 0.064 0.936 21 H 0.080 0.920 22 H 0.084 0.916 23 H 0.393 0.607 24 H 0.084 0.916 25 H 0.089 0.911 26 H 0.427 0.573 27 H 0.130 0.870 28 H 0.403 0.597 29 H -0.242 1.242 30 H -0.262 1.262 31 H 0.206 0.794 32 H 0.175 0.825 33 H 0.098 0.902 34 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.166 2.969 -5.612 9.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.062 3.938 3 O -0.380 6.380 4 C -0.184 4.184 5 C 0.011 3.989 6 H 0.150 0.850 7 N -0.861 5.861 8 S 2.815 3.185 9 O -0.960 6.960 10 O -0.979 6.979 11 C -0.770 4.770 12 C -0.240 4.240 13 C -0.202 4.202 14 O -0.362 6.362 15 Si 0.658 3.342 16 S 0.443 5.557 17 C -0.336 4.336 18 C -0.134 4.134 19 C -0.210 4.210 20 H 0.083 0.917 21 H 0.099 0.901 22 H 0.103 0.897 23 H 0.243 0.757 24 H 0.103 0.897 25 H 0.108 0.892 26 H 0.264 0.736 27 H 0.147 0.853 28 H 0.254 0.746 29 H -0.167 1.167 30 H -0.187 1.187 31 H 0.223 0.777 32 H 0.192 0.808 33 H 0.116 0.884 34 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -6.428 0.201 -5.965 8.772 hybrid contribution 1.004 2.085 0.073 2.316 sum -5.424 2.287 -5.892 8.328 Atomic orbital electron populations 1.22253 0.92110 1.04426 1.03624 1.22447 0.93351 0.81811 0.96149 1.86541 1.66095 1.23207 1.62135 1.23645 1.02937 0.93939 0.97863 1.22374 0.88073 0.90289 0.98189 0.84958 1.55375 1.15282 1.24420 1.90976 1.00848 0.72727 0.71524 0.73402 1.93542 1.68152 1.83049 1.51232 1.93532 1.39813 1.77300 1.87294 1.29720 1.21030 1.00341 1.25873 1.25111 1.00716 0.97576 1.00607 1.25470 1.05800 1.04344 0.84611 1.86539 1.34977 1.96081 1.18637 0.93768 0.88304 0.72697 0.79432 1.84434 1.44901 1.07015 1.19396 1.26306 1.06787 0.97099 1.03447 1.20162 0.97847 1.01001 0.94372 1.24282 1.03762 0.94915 0.98043 0.91744 0.90095 0.89715 0.75703 0.89747 0.89248 0.73597 0.85271 0.74561 1.16660 1.18661 0.77669 0.80824 0.88373 0.87845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 1.29 9.32 71.98 0.67 1.96 16 2 C 0.10 -0.45 1.94 -10.26 -0.02 -0.47 16 3 O -0.57 0.73 13.50 -148.98 -2.01 -1.28 16 4 C -0.14 0.19 7.30 31.12 0.23 0.42 16 5 C 0.12 -0.42 2.40 45.52 0.11 -0.31 16 6 H 0.13 -0.80 6.93 -2.38 -0.02 -0.82 16 7 N -1.10 0.15 5.61 -167.19 -0.94 -0.79 16 8 S 2.73 18.09 4.14 -56.49 -0.23 17.86 16 9 O -0.97 -10.38 16.68 -120.67 -2.01 -12.40 16 10 O -0.99 -14.08 17.06 -123.22 -2.10 -16.18 16 11 C -0.67 -1.78 5.72 21.22 0.12 -1.66 16 12 C -0.12 -0.28 5.77 24.58 0.14 -0.14 16 13 C -0.09 -0.32 2.36 71.23 0.17 -0.16 16 14 O -0.55 -3.42 9.75 -125.54 -1.22 -4.64 16 15 Si 0.76 -1.43 31.11 68.60 2.13 0.70 16 16 S 0.18 -0.48 20.85 -56.49 -1.18 -1.66 16 17 C -0.20 1.07 11.23 66.72 0.75 1.82 16 18 C -0.11 0.32 9.22 21.21 0.20 0.51 16 19 C -0.17 1.16 6.49 31.12 0.20 1.36 16 20 H 0.06 -0.36 8.14 -2.39 -0.02 -0.38 16 21 H 0.08 -0.83 8.14 -2.39 -0.02 -0.85 16 22 H 0.08 -0.85 7.34 -2.39 -0.02 -0.87 16 23 H 0.39 -3.53 9.04 -74.06 -0.67 -4.20 16 24 H 0.08 -0.11 8.10 -2.39 -0.02 -0.13 16 25 H 0.09 0.05 8.14 -2.39 -0.02 0.03 16 26 H 0.43 -1.04 8.96 -96.75 -0.87 -1.90 16 27 H 0.13 0.72 7.96 -2.39 -0.02 0.70 16 28 H 0.40 -0.55 8.50 -74.06 -0.63 -1.18 16 29 H -0.24 0.11 7.11 99.48 0.71 0.81 16 30 H -0.26 -0.99 7.11 99.48 0.71 -0.29 16 31 H 0.21 -2.45 8.06 -2.91 -0.02 -2.47 16 32 H 0.17 -1.38 3.66 -2.91 -0.01 -1.39 16 33 H 0.10 -0.55 8.14 -2.39 -0.02 -0.57 16 34 H 0.10 -1.19 7.02 -2.39 -0.02 -1.21 16 Total: 0.00 -23.82 302.78 -5.95 -29.77 By element: Atomic # 1 Polarization: -13.76 SS G_CDS: -0.95 Total: -14.72 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: 2.56 Total: 3.34 kcal Atomic # 7 Polarization: 0.15 SS G_CDS: -0.94 Total: -0.79 kcal Atomic # 8 Polarization: -27.15 SS G_CDS: -7.35 Total: -34.50 kcal Atomic # 14 Polarization: -1.43 SS G_CDS: 2.13 Total: 0.70 kcal Atomic # 16 Polarization: 17.61 SS G_CDS: -1.41 Total: 16.20 kcal Total: -23.82 -5.95 -29.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_11245586_14772022.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.508 kcal (2) G-P(sol) polarization free energy of solvation -23.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds