Wall clock time and date at job start Fri Mar 5 2021 23:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42896 * 112.84839 * 2 1 4 4 C 1.53787 * 113.60890 * 131.19410 * 2 1 3 5 5 C 1.53784 * 87.07923 * 139.98364 * 4 2 1 6 6 H 1.09004 * 113.61162 * 220.01809 * 5 4 2 7 7 N 1.46499 * 113.61434 * 89.11404 * 5 4 2 8 8 S 1.65595 * 119.99842 * 145.00050 * 7 5 4 9 9 O 1.42109 * 106.40358 * 178.53854 * 8 7 5 10 10 O 1.42099 * 106.40318 * 311.45792 * 8 7 5 11 11 C 1.76205 * 107.22094 * 65.00049 * 8 7 5 12 12 C 1.33388 * 122.53705 * 269.71402 * 11 8 7 13 13 S 1.75889 * 109.59008 * 179.90449 * 12 11 8 14 14 C 1.75880 * 90.97162 * 0.29724 * 13 12 11 15 15 C 1.50694 * 125.20520 * 179.86833 * 14 13 12 16 16 O 1.42901 * 109.47041 * 244.95878 * 15 14 13 17 17 Si 1.86300 * 109.46954 * 4.95678 * 15 14 13 18 18 C 1.33394 * 109.59665 * 359.83265 * 14 13 12 19 19 C 1.53779 * 87.08045 * 334.56667 * 5 4 2 20 20 H 1.08994 * 109.47401 * 288.80633 * 1 2 3 21 21 H 1.09006 * 109.46633 * 48.80673 * 1 2 3 22 22 H 1.09005 * 109.47442 * 168.79959 * 1 2 3 23 23 H 0.96696 * 114.00577 * 311.18793 * 3 2 1 24 24 H 1.09004 * 113.61202 * 254.53117 * 4 2 1 25 25 H 1.08994 * 113.61447 * 25.43549 * 4 2 1 26 26 H 0.96998 * 120.00234 * 325.00078 * 7 5 4 27 27 H 1.07996 * 125.20308 * 0.02562 * 12 11 8 28 28 H 1.09000 * 109.47450 * 124.95970 * 15 14 13 29 29 H 0.96700 * 114.00214 * 60.00030 * 16 15 14 30 30 H 1.48504 * 109.99938 * 58.68574 * 17 15 14 31 31 H 1.48504 * 109.99932 * 179.97438 * 17 15 14 32 32 H 1.07991 * 122.54665 * 180.02562 * 18 14 13 33 33 H 1.09006 * 113.61307 * 270.88660 * 19 5 4 34 34 H 1.09007 * 113.61642 * 139.98417 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0849 1.3168 0.0000 4 6 2.1459 -0.9281 1.0604 5 6 3.1923 -1.3137 0.0014 6 1 3.4443 -2.3742 0.0025 7 7 4.3734 -0.4469 0.0007 8 16 5.8651 -1.0804 -0.3395 9 8 6.7816 0.0048 -0.2949 10 8 5.9994 -2.2446 0.4642 11 6 5.8284 -1.6322 -2.0125 12 6 5.4668 -2.8705 -2.3517 13 16 5.5500 -3.0512 -4.0993 14 6 6.0955 -1.3885 -4.2754 15 6 6.4194 -0.7143 -5.5836 16 8 7.8110 -0.3915 -5.6214 17 14 6.0098 -1.8628 -6.9921 18 6 6.1780 -0.8151 -3.0738 19 6 2.1461 -0.9302 -1.0583 20 1 -0.3634 0.3313 0.9727 21 1 -0.3633 0.6769 -0.7734 22 1 -0.3634 -1.0081 -0.1996 23 1 1.7016 1.9052 -0.6647 24 1 2.5649 -0.3970 1.9151 25 1 1.4944 -1.7522 1.3507 26 1 4.2816 0.4981 0.1994 27 1 5.1670 -3.6432 -1.6594 28 1 5.8320 0.1991 -5.6769 29 1 8.3949 -1.1584 -5.5434 30 1 4.5720 -2.2313 -6.9453 31 1 6.3242 -1.2094 -8.2881 32 1 6.4933 0.2090 -2.9391 33 1 1.4945 -1.7549 -1.3471 34 1 2.5651 -0.4008 -1.9141 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_40_11245586_15065232.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 23:50:36 Heat of formation + Delta-G solvation = -85.982360 kcal Electronic energy + Delta-G solvation = -21642.186722 eV Core-core repulsion = 18182.743544 eV Total energy + Delta-G solvation = -3459.443178 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 306.047 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.10323 -39.50908 -38.18141 -37.58080 -36.80908 -36.37982 -33.70811 -31.86925 -29.91921 -27.24937 -26.97787 -24.92067 -23.81564 -21.46493 -21.01379 -20.12106 -19.15966 -18.57840 -17.90170 -17.63216 -17.54049 -17.06670 -16.38890 -16.16519 -15.86294 -15.62304 -15.47873 -14.95552 -14.80488 -14.31875 -14.14870 -14.00076 -13.96062 -13.46452 -13.25983 -13.11548 -13.01458 -12.88565 -12.88083 -12.67698 -12.51900 -12.42843 -12.22943 -11.68627 -11.39233 -10.80354 -10.73553 -10.53671 -10.22641 -9.89155 -5.29544 -0.72944 -0.49965 0.28371 0.54261 0.97816 1.09797 1.45643 1.76954 2.02462 2.74715 2.91952 3.19881 3.26498 3.37070 3.44657 3.57151 3.63614 3.75268 3.79343 4.04012 4.20756 4.29865 4.33679 4.39078 4.52502 4.57815 4.62959 4.70808 4.87742 4.89089 4.96731 5.03995 5.05281 5.19304 6.02205 6.38306 6.55195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.104 3.896 3 O -0.544 6.544 4 C -0.132 4.132 5 C 0.130 3.870 6 H 0.106 0.894 7 N -1.090 6.090 8 S 2.709 3.291 9 O -0.950 6.950 10 O -0.953 6.953 11 C -0.684 4.684 12 C -0.085 4.085 13 S 0.156 5.844 14 C -0.230 4.230 15 C -0.027 4.027 16 O -0.532 6.532 17 Si 0.657 3.343 18 C -0.041 4.041 19 C -0.183 4.183 20 H 0.066 0.934 21 H 0.060 0.940 22 H 0.070 0.930 23 H 0.382 0.618 24 H 0.087 0.913 25 H 0.109 0.891 26 H 0.427 0.573 27 H 0.185 0.815 28 H 0.125 0.875 29 H 0.382 0.618 30 H -0.239 1.239 31 H -0.231 1.231 32 H 0.156 0.844 33 H 0.100 0.900 34 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.963 -3.145 -2.839 6.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.063 3.937 3 O -0.350 6.350 4 C -0.171 4.171 5 C 0.022 3.978 6 H 0.124 0.876 7 N -0.851 5.851 8 S 2.795 3.205 9 O -0.940 6.940 10 O -0.943 6.943 11 C -0.784 4.784 12 C -0.224 4.224 13 S 0.419 5.581 14 C -0.347 4.347 15 C -0.140 4.140 16 O -0.338 6.338 17 Si 0.556 3.444 18 C -0.069 4.069 19 C -0.223 4.223 20 H 0.085 0.915 21 H 0.079 0.921 22 H 0.089 0.911 23 H 0.230 0.770 24 H 0.106 0.894 25 H 0.127 0.873 26 H 0.265 0.735 27 H 0.202 0.798 28 H 0.142 0.858 29 H 0.229 0.771 30 H -0.163 1.163 31 H -0.154 1.154 32 H 0.174 0.826 33 H 0.119 0.881 34 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.885 -4.342 -3.682 7.501 hybrid contribution -0.636 2.022 0.261 2.136 sum -5.521 -2.319 -3.421 6.897 Atomic orbital electron populations 1.22303 0.94577 1.03038 1.02903 1.22179 0.91920 0.83081 0.96510 1.86428 1.65632 1.21751 1.61175 1.23472 0.97305 0.98782 0.97587 1.21518 0.85271 0.93843 0.97211 0.87614 1.55312 1.23056 1.20986 1.85706 1.01630 0.72200 0.73556 0.73103 1.93622 1.59874 1.53960 1.86572 1.93610 1.85047 1.50454 1.65208 1.30078 1.19134 1.02968 1.26203 1.25903 0.97911 0.98763 0.99856 1.84307 1.62072 1.10122 1.01565 1.25057 1.11728 0.97756 1.00191 1.24453 0.86588 1.04855 0.98123 1.86549 1.14049 1.37187 1.96000 0.95033 0.84354 0.85666 0.79347 1.19606 0.97133 1.00971 0.89224 1.24261 0.98882 1.00900 0.98258 0.91483 0.92109 0.91079 0.76958 0.89404 0.87266 0.73508 0.79760 0.85760 0.77057 1.16265 1.15417 0.82622 0.88126 0.90133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 0.51 9.44 37.16 0.35 0.86 16 2 C 0.10 -0.23 1.81 -89.81 -0.16 -0.39 16 3 O -0.54 0.73 12.00 -35.23 -0.42 0.31 16 4 C -0.13 0.25 7.26 -25.91 -0.19 0.06 16 5 C 0.13 -0.22 4.51 -67.12 -0.30 -0.52 16 6 H 0.11 -0.30 7.77 -51.93 -0.40 -0.70 16 7 N -1.09 0.31 5.68 -4.20 -0.02 0.28 16 8 S 2.71 5.02 5.77 -107.50 -0.62 4.40 16 9 O -0.95 -4.92 17.63 -57.17 -1.01 -5.93 16 10 O -0.95 -3.97 17.16 -57.17 -0.98 -4.95 16 11 C -0.68 -0.37 5.86 -41.21 -0.24 -0.61 16 12 C -0.09 0.08 10.70 29.04 0.31 0.39 16 13 S 0.16 -0.24 20.59 -107.50 -2.21 -2.45 16 14 C -0.23 0.05 5.70 -36.00 -0.21 -0.15 16 15 C -0.03 0.02 2.96 36.00 0.11 0.13 16 16 O -0.53 -0.03 12.88 -35.23 -0.45 -0.48 16 17 Si 0.66 -1.07 30.98 -169.99 -5.27 -6.34 16 18 C -0.04 -0.04 9.59 -41.20 -0.40 -0.43 16 19 C -0.18 0.51 7.26 -25.92 -0.19 0.32 16 20 H 0.07 -0.15 8.14 -51.93 -0.42 -0.58 16 21 H 0.06 -0.20 8.14 -51.93 -0.42 -0.62 16 22 H 0.07 -0.26 7.94 -51.93 -0.41 -0.67 16 23 H 0.38 -1.68 9.04 45.56 0.41 -1.27 16 24 H 0.09 -0.06 8.14 -51.93 -0.42 -0.48 16 25 H 0.11 -0.39 8.10 -51.93 -0.42 -0.81 16 26 H 0.43 -0.15 7.53 -34.46 -0.26 -0.41 16 27 H 0.19 -0.57 8.00 -52.49 -0.42 -0.99 16 28 H 0.13 -0.11 7.96 -51.93 -0.41 -0.52 16 29 H 0.38 -1.41 8.70 45.56 0.40 -1.01 16 30 H -0.24 -0.04 7.11 56.52 0.40 0.36 16 31 H -0.23 -0.25 7.11 56.52 0.40 0.15 16 32 H 0.16 0.16 7.96 -52.49 -0.42 -0.25 16 33 H 0.10 -0.41 7.96 -51.93 -0.41 -0.83 16 34 H 0.08 -0.18 8.14 -51.93 -0.42 -0.60 16 LS Contribution 315.56 15.07 4.76 4.76 Total: 0.00 -9.60 315.56 -10.39 -19.99 By element: Atomic # 1 Polarization: -6.00 SS G_CDS: -3.24 Total: -9.24 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: -0.92 Total: -0.35 kcal Atomic # 7 Polarization: 0.31 SS G_CDS: -0.02 Total: 0.28 kcal Atomic # 8 Polarization: -8.19 SS G_CDS: -2.87 Total: -11.05 kcal Atomic # 14 Polarization: -1.07 SS G_CDS: -5.27 Total: -6.34 kcal Atomic # 16 Polarization: 4.78 SS G_CDS: -2.83 Total: 1.94 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -9.60 -10.39 -19.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_11245586_15065232.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.989 kcal (2) G-P(sol) polarization free energy of solvation -9.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds