Wall clock time and date at job start Fri Mar 5 2021 23:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42896 * 112.84839 * 2 1 4 4 C 1.53787 * 113.60890 * 131.19410 * 2 1 3 5 5 C 1.53784 * 87.07923 * 139.98364 * 4 2 1 6 6 H 1.09004 * 113.61162 * 220.01809 * 5 4 2 7 7 N 1.46499 * 113.61434 * 89.11404 * 5 4 2 8 8 S 1.65595 * 119.99842 * 145.00050 * 7 5 4 9 9 O 1.42109 * 106.40358 * 178.53854 * 8 7 5 10 10 O 1.42099 * 106.40318 * 311.45792 * 8 7 5 11 11 C 1.76205 * 107.22094 * 65.00049 * 8 7 5 12 12 C 1.33388 * 122.53705 * 269.71402 * 11 8 7 13 13 S 1.75889 * 109.59008 * 179.90449 * 12 11 8 14 14 C 1.75880 * 90.97162 * 0.29724 * 13 12 11 15 15 C 1.50694 * 125.20520 * 179.86833 * 14 13 12 16 16 O 1.42901 * 109.47041 * 244.95878 * 15 14 13 17 17 Si 1.86300 * 109.46954 * 4.95678 * 15 14 13 18 18 C 1.33394 * 109.59665 * 359.83265 * 14 13 12 19 19 C 1.53779 * 87.08045 * 334.56667 * 5 4 2 20 20 H 1.08994 * 109.47401 * 288.80633 * 1 2 3 21 21 H 1.09006 * 109.46633 * 48.80673 * 1 2 3 22 22 H 1.09005 * 109.47442 * 168.79959 * 1 2 3 23 23 H 0.96696 * 114.00577 * 311.18793 * 3 2 1 24 24 H 1.09004 * 113.61202 * 254.53117 * 4 2 1 25 25 H 1.08994 * 113.61447 * 25.43549 * 4 2 1 26 26 H 0.96998 * 120.00234 * 325.00078 * 7 5 4 27 27 H 1.07996 * 125.20308 * 0.02562 * 12 11 8 28 28 H 1.09000 * 109.47450 * 124.95970 * 15 14 13 29 29 H 0.96700 * 114.00214 * 60.00030 * 16 15 14 30 30 H 1.48504 * 109.99938 * 58.68574 * 17 15 14 31 31 H 1.48504 * 109.99932 * 179.97438 * 17 15 14 32 32 H 1.07991 * 122.54665 * 180.02562 * 18 14 13 33 33 H 1.09006 * 113.61307 * 270.88660 * 19 5 4 34 34 H 1.09007 * 113.61642 * 139.98417 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0849 1.3168 0.0000 4 6 2.1459 -0.9281 1.0604 5 6 3.1923 -1.3137 0.0014 6 1 3.4443 -2.3742 0.0025 7 7 4.3734 -0.4469 0.0007 8 16 5.8651 -1.0804 -0.3395 9 8 6.7816 0.0048 -0.2949 10 8 5.9994 -2.2446 0.4642 11 6 5.8284 -1.6322 -2.0125 12 6 5.4668 -2.8705 -2.3517 13 16 5.5500 -3.0512 -4.0993 14 6 6.0955 -1.3885 -4.2754 15 6 6.4194 -0.7143 -5.5836 16 8 7.8110 -0.3915 -5.6214 17 14 6.0098 -1.8628 -6.9921 18 6 6.1780 -0.8151 -3.0738 19 6 2.1461 -0.9302 -1.0583 20 1 -0.3634 0.3313 0.9727 21 1 -0.3633 0.6769 -0.7734 22 1 -0.3634 -1.0081 -0.1996 23 1 1.7016 1.9052 -0.6647 24 1 2.5649 -0.3970 1.9151 25 1 1.4944 -1.7522 1.3507 26 1 4.2816 0.4981 0.1994 27 1 5.1670 -3.6432 -1.6594 28 1 5.8320 0.1991 -5.6769 29 1 8.3949 -1.1584 -5.5434 30 1 4.5720 -2.2313 -6.9453 31 1 6.3242 -1.2094 -8.2881 32 1 6.4933 0.2090 -2.9391 33 1 1.4945 -1.7549 -1.3471 34 1 2.5651 -0.4008 -1.9141 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_11245586_15065232.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 23:50:36 Heat of formation + Delta-G solvation = -92.001745 kcal Electronic energy + Delta-G solvation = -21642.447742 eV Core-core repulsion = 18182.743544 eV Total energy + Delta-G solvation = -3459.704198 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 306.047 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.92434 -39.48573 -38.42928 -37.55149 -37.06576 -36.25514 -33.62554 -31.83777 -29.71654 -27.21162 -26.77308 -24.91729 -23.65422 -21.48756 -20.89578 -20.11849 -19.11838 -18.69039 -17.88867 -17.66000 -17.37029 -17.03204 -16.34070 -16.13243 -15.77616 -15.53561 -15.44865 -14.93254 -14.64652 -14.30237 -14.11940 -13.95933 -13.85933 -13.40514 -13.33366 -13.28359 -13.14242 -12.94201 -12.73147 -12.54922 -12.51051 -12.27170 -12.20749 -11.68441 -11.21703 -10.69346 -10.59491 -10.45806 -10.18460 -9.81926 -5.18706 -0.81159 -0.47983 0.34684 0.58600 0.95461 1.17365 1.53414 1.83857 1.99864 2.64612 3.13741 3.18982 3.39933 3.47633 3.64720 3.64838 3.79047 3.89699 3.98999 4.13343 4.26041 4.36143 4.53503 4.61347 4.65162 4.78001 4.82319 4.90368 4.92802 5.01963 5.09672 5.18118 5.25857 5.39201 6.03736 6.62180 6.85384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.100 3.900 3 O -0.562 6.562 4 C -0.137 4.137 5 C 0.117 3.883 6 H 0.119 0.881 7 N -1.086 6.086 8 S 2.724 3.276 9 O -0.992 6.992 10 O -0.980 6.980 11 C -0.691 4.691 12 C -0.085 4.085 13 S 0.202 5.798 14 C -0.236 4.236 15 C -0.036 4.036 16 O -0.551 6.551 17 Si 0.734 3.266 18 C -0.058 4.058 19 C -0.174 4.174 20 H 0.057 0.943 21 H 0.064 0.936 22 H 0.082 0.918 23 H 0.393 0.607 24 H 0.070 0.930 25 H 0.129 0.871 26 H 0.427 0.573 27 H 0.207 0.793 28 H 0.121 0.879 29 H 0.397 0.603 30 H -0.257 1.257 31 H -0.271 1.271 32 H 0.145 0.855 33 H 0.120 0.880 34 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.962 -4.604 -3.598 8.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.059 3.941 3 O -0.371 6.371 4 C -0.177 4.177 5 C 0.009 3.991 6 H 0.137 0.863 7 N -0.847 5.847 8 S 2.813 3.187 9 O -0.982 6.982 10 O -0.970 6.970 11 C -0.793 4.793 12 C -0.224 4.224 13 S 0.466 5.534 14 C -0.354 4.354 15 C -0.149 4.149 16 O -0.359 6.359 17 Si 0.636 3.364 18 C -0.087 4.087 19 C -0.213 4.213 20 H 0.077 0.923 21 H 0.083 0.917 22 H 0.101 0.899 23 H 0.243 0.757 24 H 0.089 0.911 25 H 0.147 0.853 26 H 0.265 0.735 27 H 0.224 0.776 28 H 0.139 0.861 29 H 0.247 0.753 30 H -0.182 1.182 31 H -0.196 1.196 32 H 0.162 0.838 33 H 0.139 0.861 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.877 -5.793 -4.399 9.351 hybrid contribution -0.356 2.482 0.437 2.545 sum -6.233 -3.311 -3.962 8.093 Atomic orbital electron populations 1.22281 0.93841 1.03826 1.02560 1.22264 0.92434 0.82794 0.96611 1.86399 1.66240 1.22512 1.61916 1.23593 0.97587 0.99475 0.97006 1.21799 0.84921 0.94248 0.98101 0.86335 1.55123 1.22842 1.21075 1.85671 1.00799 0.72074 0.72464 0.73326 1.93561 1.61877 1.55329 1.87426 1.93567 1.85676 1.51165 1.66558 1.29718 1.20972 1.03753 1.24858 1.26267 0.96613 0.98545 1.01023 1.84149 1.60726 1.08151 1.00395 1.25181 1.11408 0.98886 0.99889 1.24670 0.86366 1.05280 0.98535 1.86511 1.14659 1.38716 1.96021 0.94141 0.82164 0.84043 0.76044 1.19607 0.98216 1.00873 0.89958 1.24243 0.98407 1.01178 0.97503 0.92349 0.91710 0.89928 0.75695 0.91098 0.85338 0.73540 0.77619 0.86148 0.75320 1.18191 1.19606 0.83779 0.86133 0.90604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 1.11 9.44 71.98 0.68 1.79 16 2 C 0.10 -0.45 1.81 -10.27 -0.02 -0.47 16 3 O -0.56 1.13 12.00 -148.98 -1.79 -0.66 16 4 C -0.14 0.51 7.26 31.12 0.23 0.74 16 5 C 0.12 -0.40 4.51 45.52 0.21 -0.20 16 6 H 0.12 -0.75 7.77 -2.39 -0.02 -0.77 16 7 N -1.09 -0.54 5.68 -167.19 -0.95 -1.49 16 8 S 2.72 13.77 5.77 -56.49 -0.33 13.44 16 9 O -0.99 -12.58 17.63 -128.00 -2.26 -14.84 16 10 O -0.98 -9.05 17.16 -128.00 -2.20 -11.25 16 11 C -0.69 -0.99 5.86 21.22 0.12 -0.87 16 12 C -0.09 0.25 10.70 66.72 0.71 0.96 16 13 S 0.20 -0.93 20.59 -56.49 -1.16 -2.09 16 14 C -0.24 0.15 5.70 24.59 0.14 0.29 16 15 C -0.04 0.05 2.96 71.23 0.21 0.26 16 16 O -0.55 -0.23 12.88 -148.98 -1.92 -2.14 16 17 Si 0.73 -2.77 30.98 68.60 2.13 -0.64 16 18 C -0.06 -0.15 9.59 21.22 0.20 0.06 16 19 C -0.17 1.11 7.26 31.12 0.23 1.33 16 20 H 0.06 -0.27 8.14 -2.39 -0.02 -0.29 16 21 H 0.06 -0.47 8.14 -2.38 -0.02 -0.49 16 22 H 0.08 -0.73 7.94 -2.38 -0.02 -0.75 16 23 H 0.39 -3.21 9.04 -74.06 -0.67 -3.88 16 24 H 0.07 -0.01 8.14 -2.39 -0.02 -0.03 16 25 H 0.13 -1.04 8.10 -2.39 -0.02 -1.06 16 26 H 0.43 0.40 7.53 -96.75 -0.73 -0.32 16 27 H 0.21 -1.61 8.00 -2.91 -0.02 -1.64 16 28 H 0.12 -0.13 7.96 -2.39 -0.02 -0.15 16 29 H 0.40 -2.97 8.70 -74.06 -0.64 -3.62 16 30 H -0.26 0.19 7.11 99.48 0.71 0.90 16 31 H -0.27 -0.74 7.11 99.48 0.71 -0.04 16 32 H 0.14 0.61 7.96 -2.92 -0.02 0.59 16 33 H 0.12 -1.25 7.96 -2.38 -0.02 -1.26 16 34 H 0.08 -0.38 8.14 -2.38 -0.02 -0.40 16 Total: 0.00 -22.38 315.56 -6.61 -28.99 By element: Atomic # 1 Polarization: -12.37 SS G_CDS: -0.85 Total: -13.22 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: 2.71 Total: 3.90 kcal Atomic # 7 Polarization: -0.54 SS G_CDS: -0.95 Total: -1.49 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: -8.16 Total: -28.89 kcal Atomic # 14 Polarization: -2.77 SS G_CDS: 2.13 Total: -0.64 kcal Atomic # 16 Polarization: 12.84 SS G_CDS: -1.49 Total: 11.36 kcal Total: -22.38 -6.61 -28.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_11245586_15065232.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.008 kcal (2) G-P(sol) polarization free energy of solvation -22.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds