Wall clock time and date at job start Fri Mar 5 2021 23:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33392 * 125.20047 * 2 1 4 4 C 1.50691 * 122.54005 * 0.02562 * 3 2 1 5 5 O 1.42901 * 109.47325 * 65.37948 * 4 3 2 6 6 Si 1.86303 * 109.47152 * 305.38395 * 4 3 2 7 7 C 1.38421 * 114.91520 * 179.75660 * 3 2 1 8 8 S 1.76212 * 122.53513 * 180.26860 * 7 3 2 9 9 O 1.42103 * 106.40168 * 29.63674 * 8 7 3 10 10 O 1.42095 * 106.40221 * 162.55643 * 8 7 3 11 11 N 1.65600 * 107.21541 * 276.09719 * 8 7 3 12 12 C 1.46501 * 119.99993 * 65.00187 * 11 8 7 13 13 H 1.08997 * 112.85177 * 346.19341 * 12 11 8 14 14 C 1.53785 * 113.61318 * 117.49882 * 12 11 8 15 15 C 1.53783 * 87.08026 * 89.11755 * 14 12 11 16 16 C 1.53001 * 113.61774 * 139.98099 * 15 14 12 17 17 O 1.42901 * 113.60970 * 270.88415 * 15 14 12 18 18 C 1.53776 * 113.61436 * 214.99642 * 12 11 8 19 19 C 1.33386 * 114.92725 * 0.24520 * 7 3 2 20 20 C 1.50696 * 125.20403 * 180.02562 * 19 7 3 21 21 S 1.75886 * 109.59283 * 0.02562 * 19 7 3 22 22 H 1.08996 * 109.47038 * 91.86834 * 1 2 3 23 23 H 1.09002 * 109.46932 * 211.86350 * 1 2 3 24 24 H 1.08993 * 109.47386 * 331.86430 * 1 2 3 25 25 H 1.08996 * 109.47629 * 185.38459 * 4 3 2 26 26 H 0.96704 * 113.99505 * 65.80078 * 5 4 3 27 27 H 1.48495 * 109.99835 * 307.62299 * 6 4 3 28 28 H 1.48501 * 110.00276 * 68.94393 * 6 4 3 29 29 H 0.96998 * 119.99760 * 244.99424 * 11 8 7 30 30 H 1.09000 * 113.61200 * 203.66217 * 14 12 11 31 31 H 1.08993 * 113.61377 * 334.56583 * 14 12 11 32 32 H 1.09004 * 109.46760 * 322.50220 * 16 15 14 33 33 H 1.08997 * 109.47130 * 82.49906 * 16 15 14 34 34 H 1.08998 * 109.47057 * 202.50454 * 16 15 14 35 35 H 0.96705 * 113.99924 * 277.49315 * 17 15 14 36 36 H 1.09002 * 113.61367 * 25.42992 * 18 12 11 37 37 H 1.08997 * 113.61745 * 156.33758 * 18 12 11 38 38 H 1.09003 * 109.47087 * 84.58571 * 20 19 7 39 39 H 1.08997 * 109.47266 * 204.58446 * 20 19 7 40 40 H 1.08999 * 109.47502 * 324.58378 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 1.7051 2.4846 0.0006 5 8 1.0056 2.7126 1.2257 6 14 0.5280 2.6744 -1.4310 7 6 3.6379 0.8429 0.0053 8 16 4.8356 2.1353 0.0133 9 8 4.2363 3.2336 0.6872 10 8 6.0604 1.5449 0.4259 11 7 5.0522 2.6124 -1.5576 12 6 3.9491 3.2365 -2.2924 13 1 2.9871 3.1164 -1.7942 14 6 4.2411 4.6810 -2.7321 15 6 4.8330 4.0857 -4.0206 16 6 4.4839 4.8811 -5.2801 17 8 6.2258 3.7813 -3.9232 18 6 3.9192 2.8713 -3.7859 19 6 3.9751 -0.4477 0.0045 20 6 5.3860 -0.9770 0.0101 21 16 2.5210 -1.4372 -0.0042 22 1 -0.3633 -0.0335 -1.0271 23 1 -0.3633 -0.8728 0.5425 24 1 -0.3634 0.9062 0.4846 25 1 2.5142 3.2085 -0.0960 26 1 1.5741 2.7176 2.0080 27 1 1.1928 2.2622 -2.6932 28 1 -0.6858 1.8497 -1.2034 29 1 5.9096 2.4788 -1.9912 30 1 3.3435 5.2766 -2.8986 31 1 4.9765 5.1874 -2.1071 32 1 3.4621 5.2530 -5.2033 33 1 5.1700 5.7221 -5.3804 34 1 4.5708 4.2350 -6.1536 35 1 6.8057 4.5412 -4.0698 36 1 4.3949 1.9169 -4.0116 37 1 2.9337 2.9722 -4.2404 38 1 5.7555 -1.0157 1.0349 39 1 5.4000 -1.9787 -0.4193 40 1 6.0232 -0.3193 -0.5812 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_40_11245586_15065288.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 23:50:39 Heat of formation + Delta-G solvation = -80.774260 kcal Electronic energy + Delta-G solvation = -26938.497123 eV Core-core repulsion = 23168.204547 eV Total energy + Delta-G solvation = -3770.292576 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 334.079 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -41.16291 -40.27646 -38.49490 -36.96323 -36.90439 -36.40331 -34.31920 -33.74528 -30.95147 -29.92380 -28.08392 -26.96025 -26.00944 -23.86843 -23.22895 -21.14196 -20.66556 -19.93142 -19.20413 -18.51208 -18.10705 -17.55478 -17.35614 -16.79189 -16.45591 -16.14415 -15.94272 -15.57019 -15.33796 -15.15896 -14.83904 -14.74917 -14.49243 -14.26815 -14.05793 -13.86971 -13.57471 -13.43086 -13.36898 -13.29216 -13.13571 -12.95121 -12.87011 -12.74318 -12.69788 -12.57207 -12.41927 -11.72745 -11.70524 -11.37535 -11.25754 -10.84493 -10.72712 -10.57349 -10.03551 -9.56957 -4.93476 -0.76864 -0.45179 0.34254 0.66846 0.82521 1.28903 1.56536 1.92693 1.97015 2.64645 2.90643 3.20586 3.27883 3.42705 3.46108 3.60929 3.66687 3.71928 3.83689 3.96737 3.97267 4.16663 4.19471 4.33891 4.38630 4.41992 4.47002 4.54470 4.55429 4.60627 4.64094 4.76211 4.87649 4.90329 4.96791 4.99057 5.03321 5.06451 5.17214 5.19685 5.97199 6.57236 6.61833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.169 4.169 3 C -0.078 4.078 4 C -0.095 4.095 5 O -0.527 6.527 6 Si 0.715 3.285 7 C -0.688 4.688 8 S 2.705 3.295 9 O -0.946 6.946 10 O -0.950 6.950 11 N -1.089 6.089 12 C 0.124 3.876 13 H 0.095 0.905 14 C -0.177 4.177 15 C 0.105 3.895 16 C -0.171 4.171 17 O -0.545 6.545 18 C -0.138 4.138 19 C -0.047 4.047 20 C -0.111 4.111 21 S 0.156 5.844 22 H 0.077 0.923 23 H 0.076 0.924 24 H 0.099 0.901 25 H 0.103 0.897 26 H 0.372 0.628 27 H -0.242 1.242 28 H -0.231 1.231 29 H 0.428 0.572 30 H 0.107 0.893 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.383 0.617 36 H 0.085 0.915 37 H 0.109 0.891 38 H 0.101 0.899 39 H 0.080 0.920 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.348 1.439 -4.614 5.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.287 4.287 3 C -0.089 4.089 4 C -0.206 4.206 5 O -0.333 6.333 6 Si 0.612 3.388 7 C -0.787 4.787 8 S 2.792 3.208 9 O -0.936 6.936 10 O -0.941 6.941 11 N -0.851 5.851 12 C 0.016 3.984 13 H 0.112 0.888 14 C -0.217 4.217 15 C 0.064 3.936 16 C -0.228 4.228 17 O -0.352 6.352 18 C -0.177 4.177 19 C -0.168 4.168 20 C -0.170 4.170 21 S 0.422 5.578 22 H 0.095 0.905 23 H 0.094 0.906 24 H 0.118 0.882 25 H 0.120 0.880 26 H 0.219 0.781 27 H -0.166 1.166 28 H -0.154 1.154 29 H 0.266 0.734 30 H 0.125 0.875 31 H 0.105 0.895 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.232 0.768 36 H 0.104 0.896 37 H 0.127 0.873 38 H 0.119 0.881 39 H 0.099 0.901 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.573 -0.786 -4.711 5.425 hybrid contribution 1.513 0.368 0.435 1.617 sum -1.060 -0.418 -4.276 4.425 Atomic orbital electron populations 1.20790 0.87083 1.04845 1.02998 1.24469 1.00401 0.95010 1.08849 1.18617 0.90171 0.97199 1.02897 1.25812 1.05694 0.91628 0.97441 1.86621 1.37006 1.94293 1.15349 0.94235 0.80133 0.90703 0.73711 1.29579 1.11878 1.13575 1.23663 1.01663 0.73075 0.73486 0.72530 1.93541 1.77884 1.50666 1.71534 1.93607 1.42407 1.78180 1.79858 1.55309 1.21548 1.75096 1.33098 1.21714 0.88817 0.94455 0.93424 0.88777 1.24223 1.03036 0.96419 0.97999 1.22155 0.82086 0.95624 0.93710 1.22302 1.02786 1.00240 0.97502 1.86406 1.15148 1.39436 1.94174 1.23557 1.00081 0.99180 0.94888 1.24613 1.00754 0.94973 0.96436 1.20938 0.88103 1.02305 1.05643 1.84418 0.95310 1.08671 1.69412 0.90502 0.90566 0.88222 0.88005 0.78050 1.16637 1.15435 0.73437 0.87517 0.89503 0.90852 0.91869 0.91578 0.76781 0.89593 0.87298 0.88056 0.90085 0.88164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.11 8.12 36.01 0.29 0.18 16 2 C -0.17 -0.39 6.09 -36.00 -0.22 -0.61 16 3 C -0.08 -0.20 4.46 -106.25 -0.47 -0.68 16 4 C -0.10 -0.18 1.74 36.00 0.06 -0.11 16 5 O -0.53 -1.13 11.54 -35.23 -0.41 -1.54 16 6 Si 0.72 -0.11 27.90 -169.99 -4.74 -4.85 16 7 C -0.69 -1.75 5.86 -41.21 -0.24 -1.99 16 8 S 2.71 6.95 5.33 -107.50 -0.57 6.38 16 9 O -0.95 -4.06 14.68 -57.17 -0.84 -4.89 16 10 O -0.95 -4.09 14.83 -57.17 -0.85 -4.94 16 11 N -1.09 -0.48 5.68 -4.20 -0.02 -0.51 16 12 C 0.12 -0.04 4.35 -67.12 -0.29 -0.33 16 13 H 0.09 -0.03 2.20 -51.93 -0.11 -0.15 16 14 C -0.18 0.30 7.26 -25.92 -0.19 0.12 16 15 C 0.11 -0.19 1.82 -89.80 -0.16 -0.35 16 16 C -0.17 0.51 9.44 37.16 0.35 0.86 16 17 O -0.55 0.72 12.00 -35.23 -0.42 0.30 16 18 C -0.14 0.16 7.26 -25.92 -0.19 -0.03 16 19 C -0.05 -0.09 6.50 -36.01 -0.23 -0.32 16 20 C -0.11 -0.04 8.90 36.00 0.32 0.28 16 21 S 0.16 0.20 23.31 -107.50 -2.51 -2.30 16 22 H 0.08 0.04 6.88 -51.93 -0.36 -0.31 16 23 H 0.08 0.00 8.14 -51.93 -0.42 -0.42 16 24 H 0.10 0.16 5.36 -51.93 -0.28 -0.12 16 25 H 0.10 0.18 3.21 -51.93 -0.17 0.01 16 26 H 0.37 0.23 9.12 45.56 0.42 0.64 16 27 H -0.24 0.02 7.03 56.52 0.40 0.42 16 28 H -0.23 -0.22 5.07 56.52 0.29 0.06 16 29 H 0.43 -0.13 7.53 -34.47 -0.26 -0.39 16 30 H 0.11 -0.39 7.96 -51.93 -0.41 -0.80 16 31 H 0.09 -0.11 8.14 -51.93 -0.42 -0.53 16 32 H 0.07 -0.28 7.94 -51.93 -0.41 -0.69 16 33 H 0.06 -0.22 8.14 -51.93 -0.42 -0.64 16 34 H 0.07 -0.16 8.14 -51.93 -0.42 -0.58 16 35 H 0.38 -1.73 9.04 45.56 0.41 -1.32 16 36 H 0.09 -0.04 8.14 -51.93 -0.42 -0.46 16 37 H 0.11 -0.27 8.10 -51.93 -0.42 -0.70 16 38 H 0.10 0.03 8.14 -51.93 -0.42 -0.40 16 39 H 0.08 -0.12 8.14 -51.93 -0.42 -0.55 16 40 H 0.10 0.04 6.40 -51.93 -0.33 -0.29 16 LS Contribution 329.90 15.07 4.97 4.97 Total: 0.00 -7.02 329.90 -10.57 -17.58 By element: Atomic # 1 Polarization: -3.01 SS G_CDS: -4.20 Total: -7.21 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: -0.97 Total: -2.99 kcal Atomic # 7 Polarization: -0.48 SS G_CDS: -0.02 Total: -0.51 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: -2.52 Total: -11.07 kcal Atomic # 14 Polarization: -0.11 SS G_CDS: -4.74 Total: -4.85 kcal Atomic # 16 Polarization: 7.15 SS G_CDS: -3.08 Total: 4.07 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -7.02 -10.57 -17.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_11245586_15065288.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.191 kcal (2) G-P(sol) polarization free energy of solvation -7.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds