Wall clock time and date at job start Fri Mar 5 2021 23:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33392 * 125.20047 * 2 1 4 4 C 1.50691 * 122.54005 * 0.02562 * 3 2 1 5 5 O 1.42901 * 109.47325 * 65.37948 * 4 3 2 6 6 Si 1.86303 * 109.47152 * 305.38395 * 4 3 2 7 7 C 1.38421 * 114.91520 * 179.75660 * 3 2 1 8 8 S 1.76212 * 122.53513 * 180.26860 * 7 3 2 9 9 O 1.42103 * 106.40168 * 29.63674 * 8 7 3 10 10 O 1.42095 * 106.40221 * 162.55643 * 8 7 3 11 11 N 1.65600 * 107.21541 * 276.09719 * 8 7 3 12 12 C 1.46501 * 119.99993 * 65.00187 * 11 8 7 13 13 H 1.08997 * 112.85177 * 346.19341 * 12 11 8 14 14 C 1.53785 * 113.61318 * 117.49882 * 12 11 8 15 15 C 1.53783 * 87.08026 * 89.11755 * 14 12 11 16 16 C 1.53001 * 113.61774 * 139.98099 * 15 14 12 17 17 O 1.42901 * 113.60970 * 270.88415 * 15 14 12 18 18 C 1.53776 * 113.61436 * 214.99642 * 12 11 8 19 19 C 1.33386 * 114.92725 * 0.24520 * 7 3 2 20 20 C 1.50696 * 125.20403 * 180.02562 * 19 7 3 21 21 S 1.75886 * 109.59283 * 0.02562 * 19 7 3 22 22 H 1.08996 * 109.47038 * 91.86834 * 1 2 3 23 23 H 1.09002 * 109.46932 * 211.86350 * 1 2 3 24 24 H 1.08993 * 109.47386 * 331.86430 * 1 2 3 25 25 H 1.08996 * 109.47629 * 185.38459 * 4 3 2 26 26 H 0.96704 * 113.99505 * 65.80078 * 5 4 3 27 27 H 1.48495 * 109.99835 * 307.62299 * 6 4 3 28 28 H 1.48501 * 110.00276 * 68.94393 * 6 4 3 29 29 H 0.96998 * 119.99760 * 244.99424 * 11 8 7 30 30 H 1.09000 * 113.61200 * 203.66217 * 14 12 11 31 31 H 1.08993 * 113.61377 * 334.56583 * 14 12 11 32 32 H 1.09004 * 109.46760 * 322.50220 * 16 15 14 33 33 H 1.08997 * 109.47130 * 82.49906 * 16 15 14 34 34 H 1.08998 * 109.47057 * 202.50454 * 16 15 14 35 35 H 0.96705 * 113.99924 * 277.49315 * 17 15 14 36 36 H 1.09002 * 113.61367 * 25.42992 * 18 12 11 37 37 H 1.08997 * 113.61745 * 156.33758 * 18 12 11 38 38 H 1.09003 * 109.47087 * 84.58571 * 20 19 7 39 39 H 1.08997 * 109.47266 * 204.58446 * 20 19 7 40 40 H 1.08999 * 109.47502 * 324.58378 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 1.7051 2.4846 0.0006 5 8 1.0056 2.7126 1.2257 6 14 0.5280 2.6744 -1.4310 7 6 3.6379 0.8429 0.0053 8 16 4.8356 2.1353 0.0133 9 8 4.2363 3.2336 0.6872 10 8 6.0604 1.5449 0.4259 11 7 5.0522 2.6124 -1.5576 12 6 3.9491 3.2365 -2.2924 13 1 2.9871 3.1164 -1.7942 14 6 4.2411 4.6810 -2.7321 15 6 4.8330 4.0857 -4.0206 16 6 4.4839 4.8811 -5.2801 17 8 6.2258 3.7813 -3.9232 18 6 3.9192 2.8713 -3.7859 19 6 3.9751 -0.4477 0.0045 20 6 5.3860 -0.9770 0.0101 21 16 2.5210 -1.4372 -0.0042 22 1 -0.3633 -0.0335 -1.0271 23 1 -0.3633 -0.8728 0.5425 24 1 -0.3634 0.9062 0.4846 25 1 2.5142 3.2085 -0.0960 26 1 1.5741 2.7176 2.0080 27 1 1.1928 2.2622 -2.6932 28 1 -0.6858 1.8497 -1.2034 29 1 5.9096 2.4788 -1.9912 30 1 3.3435 5.2766 -2.8986 31 1 4.9765 5.1874 -2.1071 32 1 3.4621 5.2530 -5.2033 33 1 5.1700 5.7221 -5.3804 34 1 4.5708 4.2350 -6.1536 35 1 6.8057 4.5412 -4.0698 36 1 4.3949 1.9169 -4.0116 37 1 2.9337 2.9722 -4.2404 38 1 5.7555 -1.0157 1.0349 39 1 5.4000 -1.9787 -0.4193 40 1 6.0232 -0.3193 -0.5812 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_11245586_15065288.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 23:50:39 Heat of formation + Delta-G solvation = -83.374325 kcal Electronic energy + Delta-G solvation = -26938.609870 eV Core-core repulsion = 23168.204547 eV Total energy + Delta-G solvation = -3770.405323 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 334.079 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.04727 -40.37714 -38.73278 -37.18816 -37.07953 -36.30476 -34.41322 -33.70015 -31.02583 -29.73845 -28.16610 -26.81380 -26.11740 -23.77472 -23.33246 -21.16301 -20.68194 -20.03495 -19.33871 -18.63921 -18.23229 -17.52073 -17.30616 -16.90997 -16.45871 -16.22165 -15.92112 -15.51873 -15.45356 -15.21501 -14.88391 -14.66495 -14.56504 -14.32882 -14.00965 -13.90052 -13.61718 -13.55566 -13.41492 -13.37951 -13.20757 -13.03988 -12.82841 -12.76867 -12.69102 -12.53837 -12.29611 -11.83694 -11.72972 -11.35633 -11.24896 -10.93479 -10.61399 -10.53641 -10.14626 -9.68223 -4.91284 -0.93050 -0.59135 0.23427 0.54159 0.68968 1.26672 1.57230 1.86230 1.92475 2.47588 3.04800 3.10460 3.35580 3.40548 3.55620 3.60386 3.71570 3.75628 3.84050 3.88374 4.03077 4.10915 4.15732 4.35983 4.40733 4.44883 4.52196 4.58575 4.61519 4.75581 4.79518 4.82204 4.88708 4.92293 4.98600 5.08237 5.08758 5.19350 5.23627 5.36966 5.97294 6.53205 6.87753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.185 4.185 3 C -0.088 4.088 4 C -0.114 4.114 5 O -0.535 6.535 6 Si 0.762 3.238 7 C -0.698 4.698 8 S 2.716 3.284 9 O -0.968 6.968 10 O -0.973 6.973 11 N -1.083 6.083 12 C 0.109 3.891 13 H 0.094 0.906 14 C -0.176 4.176 15 C 0.107 3.893 16 C -0.168 4.168 17 O -0.561 6.561 18 C -0.141 4.141 19 C -0.054 4.054 20 C -0.117 4.117 21 S 0.177 5.823 22 H 0.082 0.918 23 H 0.086 0.914 24 H 0.093 0.907 25 H 0.100 0.900 26 H 0.375 0.625 27 H -0.240 1.240 28 H -0.246 1.246 29 H 0.431 0.569 30 H 0.128 0.872 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.069 0.931 34 H 0.059 0.941 35 H 0.396 0.604 36 H 0.075 0.925 37 H 0.124 0.876 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.816 1.535 -5.582 6.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.303 4.303 3 C -0.099 4.099 4 C -0.222 4.222 5 O -0.341 6.341 6 Si 0.658 3.342 7 C -0.798 4.798 8 S 2.804 3.196 9 O -0.958 6.958 10 O -0.963 6.963 11 N -0.845 5.845 12 C 0.001 3.999 13 H 0.111 0.889 14 C -0.216 4.216 15 C 0.066 3.934 16 C -0.226 4.226 17 O -0.370 6.370 18 C -0.180 4.180 19 C -0.175 4.175 20 C -0.175 4.175 21 S 0.443 5.557 22 H 0.101 0.899 23 H 0.105 0.895 24 H 0.111 0.889 25 H 0.118 0.882 26 H 0.223 0.777 27 H -0.165 1.165 28 H -0.171 1.171 29 H 0.270 0.730 30 H 0.146 0.854 31 H 0.099 0.901 32 H 0.103 0.897 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.246 0.754 36 H 0.094 0.906 37 H 0.142 0.858 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.011 -0.673 -5.668 6.453 hybrid contribution 1.675 0.308 0.758 1.864 sum -1.336 -0.365 -4.910 5.102 Atomic orbital electron populations 1.20826 0.86450 1.05036 1.03464 1.24701 1.01091 0.95426 1.09048 1.18759 0.90248 0.97744 1.03103 1.26184 1.06594 0.91305 0.98127 1.86589 1.37456 1.94297 1.15768 0.93752 0.78239 0.89813 0.72362 1.29554 1.11904 1.13766 1.24580 1.01141 0.72505 0.73127 0.72831 1.93511 1.78167 1.51555 1.72524 1.93571 1.43469 1.78528 1.80707 1.55116 1.22033 1.75013 1.32356 1.21952 0.88448 0.95646 0.93830 0.88878 1.24308 1.03839 0.95663 0.97758 1.22159 0.81784 0.95282 0.94196 1.22289 1.03698 1.00129 0.96456 1.86371 1.15738 1.40635 1.94271 1.23645 1.01067 0.99071 0.94191 1.24871 1.01662 0.95048 0.95914 1.21049 0.87279 1.03392 1.05803 1.84273 0.94566 1.07920 1.68941 0.89924 0.89518 0.88871 0.88219 0.77683 1.16483 1.17116 0.73043 0.85375 0.90148 0.89674 0.91213 0.92163 0.75365 0.90583 0.85794 0.88061 0.88041 0.88365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.23 8.12 71.24 0.58 0.35 16 2 C -0.18 -0.89 6.09 24.59 0.15 -0.74 16 3 C -0.09 -0.52 4.46 -20.92 -0.09 -0.61 16 4 C -0.11 -0.49 1.74 71.23 0.12 -0.37 16 5 O -0.54 -2.79 11.54 -148.98 -1.72 -4.51 16 6 Si 0.76 -0.39 27.90 68.60 1.91 1.53 16 7 C -0.70 -4.16 5.86 21.21 0.12 -4.03 16 8 S 2.72 17.33 5.33 -56.49 -0.30 17.02 16 9 O -0.97 -9.66 14.68 -128.00 -1.88 -11.54 16 10 O -0.97 -9.72 14.83 -128.00 -1.90 -11.62 16 11 N -1.08 -1.87 5.68 -167.20 -0.95 -2.82 16 12 C 0.11 -0.05 4.35 45.52 0.20 0.14 16 13 H 0.09 -0.05 2.20 -2.39 -0.01 -0.06 16 14 C -0.18 0.68 7.26 31.12 0.23 0.91 16 15 C 0.11 -0.44 1.82 -10.27 -0.02 -0.45 16 16 C -0.17 1.18 9.44 71.98 0.68 1.86 16 17 O -0.56 1.47 12.00 -148.98 -1.79 -0.32 16 18 C -0.14 0.37 7.26 31.12 0.23 0.60 16 19 C -0.05 -0.23 6.50 24.59 0.16 -0.07 16 20 C -0.12 -0.14 8.90 71.23 0.63 0.50 16 21 S 0.18 0.46 23.31 -56.49 -1.32 -0.86 16 22 H 0.08 0.08 6.88 -2.39 -0.02 0.06 16 23 H 0.09 -0.02 8.14 -2.39 -0.02 -0.04 16 24 H 0.09 0.34 5.36 -2.39 -0.01 0.33 16 25 H 0.10 0.44 3.21 -2.39 -0.01 0.43 16 26 H 0.37 1.01 9.12 -74.05 -0.68 0.33 16 27 H -0.24 0.24 7.03 99.48 0.70 0.94 16 28 H -0.25 -0.46 5.07 99.48 0.50 0.04 16 29 H 0.43 0.16 7.53 -96.75 -0.73 -0.57 16 30 H 0.13 -1.10 7.96 -2.39 -0.02 -1.12 16 31 H 0.08 -0.19 8.14 -2.39 -0.02 -0.21 16 32 H 0.08 -0.79 7.94 -2.38 -0.02 -0.81 16 33 H 0.07 -0.57 8.14 -2.39 -0.02 -0.59 16 34 H 0.06 -0.33 8.14 -2.39 -0.02 -0.35 16 35 H 0.40 -3.59 9.04 -74.05 -0.67 -4.26 16 36 H 0.08 -0.04 8.14 -2.39 -0.02 -0.06 16 37 H 0.12 -0.75 8.10 -2.39 -0.02 -0.77 16 38 H 0.10 0.12 8.14 -2.39 -0.02 0.10 16 39 H 0.10 -0.35 8.14 -2.39 -0.02 -0.37 16 40 H 0.10 0.16 6.40 -2.39 -0.02 0.14 16 Total: 0.00 -15.77 329.90 -6.07 -21.84 By element: Atomic # 1 Polarization: -5.68 SS G_CDS: -1.12 Total: -6.80 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: 2.99 Total: -1.92 kcal Atomic # 7 Polarization: -1.87 SS G_CDS: -0.95 Total: -2.82 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: -7.28 Total: -27.99 kcal Atomic # 14 Polarization: -0.39 SS G_CDS: 1.91 Total: 1.53 kcal Atomic # 16 Polarization: 17.79 SS G_CDS: -1.62 Total: 16.17 kcal Total: -15.77 -6.07 -21.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_11245586_15065288.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.533 kcal (2) G-P(sol) polarization free energy of solvation -15.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds