Wall clock time and date at job start Fri Mar 5 2021 23:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42904 * 112.84894 * 2 1 4 4 C 1.53778 * 113.69816 * 131.27458 * 2 1 3 5 5 C 1.53772 * 87.08489 * 139.99115 * 4 2 1 6 6 H 1.09003 * 113.69482 * 220.00985 * 5 4 2 7 7 N 1.46504 * 113.61491 * 89.11274 * 5 4 2 8 8 S 1.65607 * 119.99538 * 119.48196 * 7 5 4 9 9 O 1.42095 * 106.40132 * 313.96667 * 8 7 5 10 10 O 1.42098 * 106.39802 * 181.04820 * 8 7 5 11 11 C 1.76203 * 107.21716 * 67.50823 * 8 7 5 12 12 C 1.38218 * 119.99938 * 164.97524 * 11 8 7 13 13 C 1.50700 * 119.99790 * 359.97438 * 12 11 8 14 14 O 1.42896 * 109.47190 * 75.57320 * 13 12 11 15 15 Si 1.86303 * 109.47115 * 195.57769 * 13 12 11 16 16 C 1.38253 * 119.99923 * 179.97438 * 12 11 8 17 17 C 1.38205 * 120.00036 * 359.96103 * 16 12 11 18 18 C 1.38256 * 120.00445 * 359.97438 * 17 16 12 19 19 C 1.38217 * 119.99692 * 0.07286 * 18 17 16 20 20 C 1.53783 * 113.61476 * 228.81456 * 2 1 3 21 21 H 1.09004 * 109.46764 * 191.19446 * 1 2 3 22 22 H 1.09001 * 109.47062 * 311.18897 * 1 2 3 23 23 H 1.09000 * 109.47527 * 71.19637 * 1 2 3 24 24 H 0.96701 * 113.99252 * 48.80863 * 3 2 1 25 25 H 1.09002 * 113.61142 * 25.43998 * 4 2 1 26 26 H 1.09004 * 113.61203 * 254.54541 * 4 2 1 27 27 H 0.96994 * 120.00124 * 299.48396 * 7 5 4 28 28 H 1.09000 * 109.47061 * 315.57334 * 13 12 11 29 29 H 0.96692 * 114.00313 * 305.06620 * 14 13 12 30 30 H 1.48497 * 109.99599 * 298.68216 * 15 13 12 31 31 H 1.48501 * 109.99844 * 59.99308 * 15 13 12 32 32 H 1.08000 * 120.00063 * 179.97438 * 16 12 11 33 33 H 1.08003 * 120.00124 * 179.72359 * 17 16 12 34 34 H 1.08004 * 120.00871 * 180.02562 * 18 17 16 35 35 H 1.08007 * 120.00048 * 179.97438 * 19 18 17 36 36 H 1.08995 * 113.61701 * 105.37788 * 20 2 1 37 37 H 1.09003 * 113.61069 * 334.47351 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0849 1.3169 0.0000 4 6 2.1481 -0.9289 1.0583 5 6 3.1937 -1.3118 -0.0022 6 1 3.4480 -2.3718 -0.0039 7 7 4.3739 -0.4437 -0.0030 8 16 5.8731 -1.0843 0.2879 9 8 5.7330 -1.9374 1.4155 10 8 6.7887 0.0015 0.2437 11 6 6.2693 -2.1252 -1.0775 12 6 7.5709 -2.5493 -1.2683 13 6 8.6512 -2.1209 -0.3089 14 8 8.5315 -2.8638 0.9059 15 14 10.3210 -2.4410 -1.0707 16 6 7.8817 -3.3665 -2.3393 17 6 6.8908 -3.7600 -3.2186 18 6 5.5885 -3.3369 -3.0271 19 6 5.2779 -2.5192 -1.9569 20 6 2.1460 -0.9279 -1.0604 21 1 -0.3633 -1.0082 0.1995 22 1 -0.3633 0.6768 0.7734 23 1 -0.3634 0.3312 -0.9728 24 1 1.7014 1.9052 0.6648 25 1 1.4977 -1.7542 1.3481 26 1 2.5672 -0.3985 1.9134 27 1 4.2771 0.5062 -0.1738 28 1 8.5470 -1.0570 -0.0959 29 1 7.6585 -2.8063 1.3177 30 1 10.4880 -3.8924 -1.3366 31 1 10.4579 -1.6741 -2.3349 32 1 8.8988 -3.6975 -2.4886 33 1 7.1343 -4.3947 -4.0578 34 1 4.8140 -3.6447 -3.7140 35 1 4.2607 -2.1883 -1.8075 36 1 2.5636 -0.3968 -1.9158 37 1 1.4951 -1.7529 -1.3498 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_11245586_2726874.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 23:50:42 Heat of formation + Delta-G solvation = -91.737573 kcal Electronic energy + Delta-G solvation = -23697.167358 eV Core-core repulsion = 20148.322369 eV Total energy + Delta-G solvation = -3548.844989 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 300.091 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.07757 -40.87448 -38.58903 -38.14119 -37.12839 -36.35841 -33.84214 -32.97569 -32.60304 -29.76315 -27.15951 -26.83526 -24.64554 -23.86223 -23.08560 -21.16867 -20.54881 -19.61483 -18.74880 -18.34067 -17.47404 -17.33665 -17.20095 -16.84276 -16.44044 -16.12879 -15.87715 -15.64330 -15.47899 -15.29211 -14.68751 -14.20521 -13.97412 -13.86851 -13.76080 -13.63055 -13.46781 -13.43437 -13.23540 -13.04911 -12.76916 -12.54518 -12.35577 -12.30133 -12.11420 -11.69811 -11.27436 -11.20468 -10.70700 -10.63572 -10.56278 -10.25675 -4.93961 -0.95994 -0.50722 -0.08932 1.15382 1.50617 1.60032 1.73876 2.18468 2.24827 3.06631 3.09195 3.16021 3.40136 3.43324 3.50784 3.60612 3.72916 3.74625 3.87138 3.94412 4.00689 4.09932 4.18291 4.37478 4.49110 4.55377 4.58918 4.73174 4.75730 4.81564 4.90467 4.95912 5.06641 5.08726 5.16194 5.21854 5.34776 5.55897 5.91466 6.08681 6.83591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.102 3.898 3 O -0.563 6.563 4 C -0.178 4.178 5 C 0.107 3.893 6 H 0.116 0.884 7 N -1.080 6.080 8 S 2.700 3.300 9 O -0.973 6.973 10 O -0.981 6.981 11 C -0.679 4.679 12 C -0.038 4.038 13 C -0.177 4.177 14 O -0.541 6.541 15 Si 0.830 3.170 16 C -0.155 4.155 17 C -0.059 4.059 18 C -0.128 4.128 19 C -0.036 4.036 20 C -0.136 4.136 21 H 0.082 0.918 22 H 0.063 0.937 23 H 0.062 0.938 24 H 0.394 0.606 25 H 0.121 0.879 26 H 0.070 0.930 27 H 0.432 0.568 28 H 0.099 0.901 29 H 0.365 0.635 30 H -0.264 1.264 31 H -0.253 1.253 32 H 0.137 0.863 33 H 0.167 0.833 34 H 0.175 0.825 35 H 0.167 0.833 36 H 0.085 0.915 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.275 -1.007 -3.982 7.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.061 3.939 3 O -0.371 6.371 4 C -0.218 4.218 5 C -0.001 4.001 6 H 0.134 0.866 7 N -0.843 5.843 8 S 2.790 3.210 9 O -0.963 6.963 10 O -0.971 6.971 11 C -0.767 4.767 12 C -0.040 4.040 13 C -0.282 4.282 14 O -0.350 6.350 15 Si 0.726 3.274 16 C -0.174 4.174 17 C -0.077 4.077 18 C -0.146 4.146 19 C -0.055 4.055 20 C -0.175 4.175 21 H 0.101 0.899 22 H 0.082 0.918 23 H 0.081 0.919 24 H 0.245 0.755 25 H 0.139 0.861 26 H 0.089 0.911 27 H 0.271 0.729 28 H 0.117 0.883 29 H 0.216 0.784 30 H -0.190 1.190 31 H -0.178 1.178 32 H 0.154 0.846 33 H 0.184 0.816 34 H 0.192 0.808 35 H 0.184 0.816 36 H 0.104 0.896 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -4.377 -1.705 -4.496 6.502 hybrid contribution -2.087 0.531 -0.041 2.154 sum -6.465 -1.174 -4.537 7.985 Atomic orbital electron populations 1.22279 0.93579 1.03883 1.02796 1.22244 0.92622 0.82759 0.96307 1.86377 1.66333 1.22465 1.61938 1.24257 0.98296 1.01487 0.97748 1.21977 0.85099 0.93826 0.99153 0.86581 1.54982 1.20653 1.19883 1.88831 1.01611 0.72319 0.73172 0.73882 1.93567 1.85775 1.68835 1.48142 1.93564 1.62197 1.54022 1.87330 1.30732 1.01238 1.21656 1.23036 1.20014 0.92946 0.94805 0.96211 1.26692 1.13120 1.00354 0.88014 1.86740 1.38352 1.73168 1.36710 0.91731 0.78602 0.78895 0.78186 1.21410 1.01051 0.99082 0.95817 1.21923 0.92707 0.95461 0.97559 1.21853 0.97655 0.97036 0.98085 1.21502 0.98583 0.93285 0.92085 1.23712 0.97151 0.99770 0.96859 0.89946 0.91814 0.91851 0.75512 0.86130 0.91094 0.72917 0.88336 0.78446 1.18971 1.17779 0.84606 0.81568 0.80765 0.81594 0.89635 0.84477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 1.32 9.44 71.98 0.68 2.00 16 2 C 0.10 -0.58 1.81 -10.27 -0.02 -0.60 16 3 O -0.56 1.86 11.97 -148.98 -1.78 0.07 16 4 C -0.18 0.84 7.26 31.12 0.23 1.06 16 5 C 0.11 -0.42 2.67 45.52 0.12 -0.30 16 6 H 0.12 -0.72 7.19 -2.39 -0.02 -0.74 16 7 N -1.08 -0.35 5.35 -167.19 -0.89 -1.24 16 8 S 2.70 18.86 4.53 -56.49 -0.26 18.60 16 9 O -0.97 -10.73 15.57 -127.85 -1.99 -12.72 16 10 O -0.98 -12.53 15.69 -128.00 -2.01 -14.54 16 11 C -0.68 -4.04 5.78 22.27 0.13 -3.91 16 12 C -0.04 -0.33 5.23 -19.87 -0.10 -0.43 16 13 C -0.18 -1.76 2.10 71.24 0.15 -1.61 16 14 O -0.54 -6.74 12.68 -148.98 -1.89 -8.63 16 15 Si 0.83 3.16 30.43 68.60 2.09 5.25 16 16 C -0.16 -0.81 8.66 22.27 0.19 -0.62 16 17 C -0.06 0.04 10.05 22.27 0.22 0.26 16 18 C -0.13 0.39 10.05 22.27 0.22 0.61 16 19 C -0.04 0.02 9.14 22.27 0.20 0.22 16 20 C -0.14 1.04 6.61 31.12 0.21 1.25 16 21 H 0.08 -0.81 7.95 -2.39 -0.02 -0.83 16 22 H 0.06 -0.51 8.14 -2.39 -0.02 -0.53 16 23 H 0.06 -0.43 8.14 -2.39 -0.02 -0.45 16 24 H 0.39 -3.55 9.04 -74.06 -0.67 -4.22 16 25 H 0.12 -0.99 7.97 -2.39 -0.02 -1.01 16 26 H 0.07 -0.12 8.14 -2.38 -0.02 -0.14 16 27 H 0.43 -0.07 7.50 -96.75 -0.73 -0.79 16 28 H 0.10 1.05 5.50 -2.39 -0.01 1.04 16 29 H 0.36 4.38 6.05 -74.06 -0.45 3.93 16 30 H -0.26 -1.62 6.79 99.48 0.68 -0.94 16 31 H -0.25 -1.24 7.11 99.48 0.71 -0.53 16 32 H 0.14 0.50 4.95 -2.91 -0.01 0.48 16 33 H 0.17 -1.19 8.06 -2.91 -0.02 -1.21 16 34 H 0.17 -1.83 8.06 -2.91 -0.02 -1.85 16 35 H 0.17 -1.12 4.56 -2.91 -0.01 -1.13 16 36 H 0.09 -0.56 8.14 -2.39 -0.02 -0.58 16 37 H 0.14 -1.77 8.10 -2.39 -0.02 -1.79 16 Total: 0.00 -21.35 306.40 -5.20 -26.56 By element: Atomic # 1 Polarization: -10.59 SS G_CDS: -0.70 Total: -11.29 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: 2.23 Total: -2.07 kcal Atomic # 7 Polarization: -0.35 SS G_CDS: -0.89 Total: -1.24 kcal Atomic # 8 Polarization: -28.14 SS G_CDS: -7.67 Total: -35.81 kcal Atomic # 14 Polarization: 3.16 SS G_CDS: 2.09 Total: 5.25 kcal Atomic # 16 Polarization: 18.86 SS G_CDS: -0.26 Total: 18.60 kcal Total: -21.35 -5.20 -26.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_11245586_2726874.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.180 kcal (2) G-P(sol) polarization free energy of solvation -21.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds