Wall clock time and date at job start Sat Mar 6 2021 00:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47235 * 2 1 4 4 C 1.52998 * 109.46852 * 239.99926 * 2 1 3 5 5 O 1.45202 * 109.46990 * 120.00328 * 2 1 3 6 6 C 1.34638 * 116.99809 * 59.99761 * 5 2 1 7 7 O 1.21509 * 120.00379 * 359.97438 * 6 5 2 8 8 N 1.34777 * 119.99735 * 180.02562 * 6 5 2 9 9 C 1.46503 * 120.00046 * 180.02562 * 8 6 5 10 10 H 1.09001 * 112.90464 * 23.74485 * 9 8 6 11 11 C 1.53778 * 113.61449 * 154.99793 * 9 8 6 12 12 C 1.53784 * 87.08432 * 89.11520 * 11 9 8 13 13 H 1.09004 * 113.61404 * 270.80310 * 12 11 9 14 14 S 1.81395 * 113.61696 * 139.98046 * 12 11 9 15 15 O 1.42097 * 110.54530 * 73.37609 * 14 12 11 16 16 O 1.42101 * 110.54141 * 296.62814 * 14 12 11 17 17 O 1.52204 * 104.44982 * 185.00231 * 14 12 11 18 18 C 1.35899 * 113.99641 * 75.00132 * 17 14 12 19 19 C 1.38666 * 120.04601 * 90.00511 * 18 17 14 20 20 C 1.38385 * 119.92011 * 180.02562 * 19 18 17 21 21 F 1.35103 * 119.99246 * 180.02562 * 20 19 18 22 22 C 1.38469 * 120.00782 * 359.97438 * 20 19 18 23 23 C 1.50697 * 119.95924 * 179.97438 * 22 20 19 24 24 O 1.42895 * 109.47590 * 285.00304 * 23 22 20 25 25 Si 1.86300 * 109.47007 * 165.00004 * 23 22 20 26 26 C 1.38255 * 120.08365 * 0.26098 * 22 20 19 27 27 C 1.38131 * 120.08004 * 359.48191 * 26 22 20 28 28 C 1.53780 * 113.61253 * 252.49352 * 9 8 6 29 29 H 1.08996 * 109.46724 * 299.99952 * 1 2 3 30 30 H 1.09007 * 109.46820 * 59.99678 * 1 2 3 31 31 H 1.08996 * 109.47535 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46967 * 180.02562 * 3 2 1 33 33 H 1.08997 * 109.47079 * 300.00264 * 3 2 1 34 34 H 1.09004 * 109.46947 * 60.00209 * 3 2 1 35 35 H 1.08996 * 109.47207 * 300.00392 * 4 2 1 36 36 H 1.09000 * 109.47396 * 60.00347 * 4 2 1 37 37 H 1.09000 * 109.47077 * 180.02562 * 4 2 1 38 38 H 0.97006 * 119.99872 * 0.02562 * 8 6 5 39 39 H 1.09001 * 113.61627 * 334.56316 * 11 9 8 40 40 H 1.08998 * 113.68989 * 203.67723 * 11 9 8 41 41 H 1.07999 * 120.03332 * 359.97438 * 19 18 17 42 42 H 1.09001 * 109.46613 * 45.00443 * 23 22 20 43 43 H 0.96695 * 114.00385 * 180.02562 * 24 23 22 44 44 H 1.48506 * 110.00048 * 60.00676 * 25 23 22 45 45 H 1.48502 * 109.99996 * 181.32001 * 25 23 22 46 46 H 1.08000 * 119.96147 * 179.72230 * 26 22 20 47 47 H 1.07999 * 120.00757 * 180.23444 * 27 26 22 48 48 H 1.08997 * 113.61521 * 156.33254 * 28 9 8 49 49 H 1.09007 * 113.61613 * 25.43242 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6846 1.1855 6 6 1.6522 -1.9724 1.3382 7 8 0.9508 -2.5095 0.5039 8 7 2.0671 -2.6655 2.4170 9 6 1.6739 -4.0670 2.5830 10 1 1.4212 -4.5512 1.6397 11 6 2.6469 -4.8811 3.4521 12 6 1.8053 -4.4461 4.6634 13 1 2.1347 -3.5076 5.1096 14 16 1.5612 -5.7612 5.8887 15 8 2.7596 -5.9940 6.6158 16 8 0.8257 -6.8382 5.3243 17 8 0.6125 -5.1547 6.9128 18 6 -0.6763 -5.0702 6.4903 19 6 -1.5526 -6.1201 6.7201 20 6 -2.8643 -6.0315 6.2882 21 9 -3.7194 -7.0533 6.5118 22 6 -3.3008 -4.8953 5.6280 23 6 -4.7293 -4.8002 5.1577 24 8 -4.9052 -5.6189 3.9998 25 14 -5.1268 -3.0303 4.7331 26 6 -2.4261 -3.8504 5.3945 27 6 -1.1174 -3.9329 5.8287 28 6 0.6272 -4.2864 3.6880 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1301 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6768 1.9563 0.8900 35 1 1.6766 -1.7489 -1.2493 36 1 1.6767 -0.2074 -2.1392 37 1 3.1300 -0.7217 -1.2490 38 1 2.6262 -2.2364 3.0836 39 1 3.6620 -4.4839 3.4603 40 1 2.6137 -5.9534 3.2597 41 1 -1.2114 -7.0062 7.2347 42 1 -5.3959 -5.1424 5.9493 43 1 -5.8032 -5.6058 3.6415 44 1 -4.2247 -2.5518 3.6548 45 1 -6.5422 -2.9179 4.2982 46 1 -2.7674 -2.9670 4.8754 47 1 -0.4361 -3.1144 5.6489 48 1 0.0405 -5.1960 3.5593 49 1 0.0115 -3.4090 3.8867 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_40_11680700_17701012.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 00:20:40 Heat of formation + Delta-G solvation = -183.550591 kcal Electronic energy + Delta-G solvation = -38322.842441 eV Core-core repulsion = 33068.358784 eV Total energy + Delta-G solvation = -5254.483657 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 404.128 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -50.06331 -42.41703 -41.96911 -40.55572 -39.73005 -38.38628 -37.87459 -37.69671 -37.26396 -35.36424 -34.09571 -32.74651 -32.08674 -28.40070 -28.36168 -27.51088 -27.30581 -27.17312 -24.54336 -23.97242 -23.56549 -21.96252 -21.31335 -20.96671 -19.95671 -19.41893 -18.92760 -18.88970 -18.73784 -17.96705 -17.72498 -17.55594 -17.29941 -17.17118 -16.90817 -16.62943 -16.17798 -15.93504 -15.85272 -15.51497 -15.43447 -15.33005 -15.24972 -14.66920 -14.45366 -14.29114 -14.24467 -14.20057 -14.08194 -13.95780 -13.75623 -13.47944 -13.36046 -13.29123 -13.21028 -13.19497 -13.02244 -12.94094 -12.90420 -12.56701 -12.41337 -12.39808 -12.28910 -12.16030 -11.95936 -11.49059 -11.38305 -11.08127 -10.69912 -10.43455 -10.38902 -10.01090 -5.15955 -1.24909 -0.38413 -0.25039 0.80817 1.00516 1.02552 1.39846 1.72680 1.74605 1.93145 2.26153 2.52160 2.73427 2.87101 2.95714 2.96917 3.12356 3.25753 3.31352 3.40188 3.44886 3.55781 3.64642 3.69794 3.75560 3.83001 3.89490 4.13390 4.14105 4.16871 4.24576 4.34952 4.44100 4.46427 4.48977 4.50684 4.53259 4.56286 4.62823 4.70022 4.71392 4.73336 4.80422 4.82502 4.85840 5.01474 5.13730 5.29148 5.36445 5.38344 5.49086 6.24978 6.26125 7.28683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.137 3.863 3 C -0.142 4.142 4 C -0.185 4.185 5 O -0.363 6.363 6 C 0.653 3.347 7 O -0.560 6.560 8 N -0.696 5.696 9 C 0.154 3.846 10 H 0.122 0.878 11 C -0.112 4.112 12 C -0.651 4.651 13 H 0.161 0.839 14 S 2.598 3.402 15 O -0.919 6.919 16 O -0.940 6.940 17 O -0.658 6.658 18 C 0.102 3.898 19 C -0.127 4.127 20 C 0.147 3.853 21 F -0.118 7.118 22 C -0.088 4.088 23 C -0.082 4.082 24 O -0.530 6.530 25 Si 0.692 3.308 26 C -0.074 4.074 27 C -0.130 4.130 28 C -0.134 4.134 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.067 0.933 35 H 0.087 0.913 36 H 0.073 0.927 37 H 0.060 0.940 38 H 0.408 0.592 39 H 0.102 0.898 40 H 0.114 0.886 41 H 0.157 0.843 42 H 0.083 0.917 43 H 0.385 0.615 44 H -0.248 1.248 45 H -0.255 1.255 46 H 0.154 0.846 47 H 0.154 0.846 48 H 0.118 0.882 49 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.843 6.719 -0.008 6.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.101 3.899 3 C -0.199 4.199 4 C -0.242 4.242 5 O -0.278 6.278 6 C 0.407 3.593 7 O -0.449 6.449 8 N -0.355 5.355 9 C 0.048 3.952 10 H 0.139 0.861 11 C -0.151 4.151 12 C -0.758 4.758 13 H 0.179 0.821 14 S 2.693 3.307 15 O -0.917 6.917 16 O -0.938 6.938 17 O -0.617 6.617 18 C 0.060 3.940 19 C -0.147 4.147 20 C 0.128 3.872 21 F -0.097 7.097 22 C -0.090 4.090 23 C -0.191 4.191 24 O -0.338 6.338 25 Si 0.592 3.408 26 C -0.092 4.092 27 C -0.150 4.150 28 C -0.173 4.173 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.106 0.894 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.086 0.914 35 H 0.106 0.894 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.243 0.757 39 H 0.120 0.880 40 H 0.132 0.868 41 H 0.175 0.825 42 H 0.101 0.899 43 H 0.233 0.767 44 H -0.173 1.173 45 H -0.179 1.179 46 H 0.171 0.829 47 H 0.171 0.829 48 H 0.136 0.864 49 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -1.706 6.374 -0.459 6.614 hybrid contribution -0.162 -0.350 -0.434 0.580 sum -1.868 6.024 -0.893 6.370 Atomic orbital electron populations 1.22531 0.93807 1.05062 1.02785 1.22143 0.94446 0.91565 0.81754 1.21884 1.02394 0.92263 1.03392 1.22531 1.01683 1.03458 0.96554 1.86309 1.71454 1.23194 1.46855 1.18047 0.78649 0.80743 0.81874 1.90941 1.40550 1.70330 1.43043 1.44295 1.55680 1.11555 1.23921 1.21588 0.94087 0.79850 0.99632 0.86058 1.23025 0.99514 1.02139 0.90438 1.32339 1.08438 1.20783 1.14224 0.82131 1.05551 0.74557 0.75848 0.74743 1.93669 1.45847 1.83643 1.68552 1.93690 1.69621 1.50882 1.79606 1.85743 1.26518 1.87244 1.62167 1.17574 0.79921 0.95766 1.00745 1.21243 0.91877 1.00079 1.01549 1.17044 0.86946 0.85115 0.98124 1.91579 1.68928 1.56882 1.92267 1.19537 0.96024 0.93879 0.99556 1.24787 0.94949 1.08092 0.91228 1.86604 1.35726 1.67385 1.44058 0.95018 0.80673 0.76902 0.88224 1.20860 0.91686 0.98596 0.98013 1.21366 0.97416 0.97330 0.98933 1.23576 0.94738 1.05563 0.93408 0.92098 0.90857 0.89417 0.91343 0.89866 0.91363 0.89404 0.90847 0.92047 0.75671 0.87979 0.86809 0.82500 0.89867 0.76663 1.17305 1.17947 0.82920 0.82869 0.86389 0.88249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.06 8.37 37.16 0.31 0.25 16 2 C 0.14 0.04 1.13 -90.62 -0.10 -0.06 16 3 C -0.14 0.22 8.85 37.16 0.33 0.55 16 4 C -0.19 -0.11 8.37 37.16 0.31 0.21 16 5 O -0.36 -0.39 9.94 -40.32 -0.40 -0.79 16 6 C 0.65 0.85 8.06 54.06 0.44 1.28 16 7 O -0.56 -2.12 11.48 -19.28 -0.22 -2.34 16 8 N -0.70 1.27 5.27 -57.93 -0.31 0.97 16 9 C 0.15 -0.34 4.32 -67.12 -0.29 -0.63 16 10 H 0.12 -0.12 7.47 -51.93 -0.39 -0.51 16 11 C -0.11 0.39 7.42 -25.92 -0.19 0.19 16 12 C -0.65 2.15 3.85 -25.92 -0.10 2.05 16 13 H 0.16 -0.96 8.14 -51.93 -0.42 -1.39 16 14 S 2.60 1.50 5.15 -107.50 -0.55 0.95 16 15 O -0.92 -3.92 18.09 -67.04 -1.21 -5.13 16 16 O -0.94 -2.56 15.58 -67.04 -1.04 -3.60 16 17 O -0.66 -0.34 10.05 -51.75 -0.52 -0.86 16 18 C 0.10 0.01 4.63 -39.22 -0.18 -0.17 16 19 C -0.13 -0.14 9.03 -39.37 -0.36 -0.50 16 20 C 0.15 0.19 7.24 -39.44 -0.29 -0.09 16 21 F -0.12 -0.31 16.75 2.25 0.04 -0.27 16 22 C -0.09 0.02 5.30 -104.53 -0.55 -0.53 16 23 C -0.08 0.10 2.44 36.00 0.09 0.19 16 24 O -0.53 -0.18 12.86 -35.23 -0.45 -0.63 16 25 Si 0.69 -1.95 30.20 -169.99 -5.13 -7.08 16 26 C -0.07 0.16 8.65 -39.61 -0.34 -0.18 16 27 C -0.13 0.31 6.70 -39.42 -0.26 0.05 16 28 C -0.13 0.38 5.11 -25.92 -0.13 0.25 16 29 H 0.06 -0.01 8.14 -51.93 -0.42 -0.43 16 30 H 0.07 -0.06 8.14 -51.93 -0.42 -0.48 16 31 H 0.09 0.21 5.88 -51.93 -0.31 -0.09 16 32 H 0.07 -0.11 8.14 -51.93 -0.42 -0.53 16 33 H 0.08 -0.22 8.14 -51.93 -0.42 -0.65 16 34 H 0.07 -0.12 8.14 -51.93 -0.42 -0.54 16 35 H 0.09 0.23 5.88 -51.93 -0.31 -0.08 16 36 H 0.07 -0.05 8.14 -51.93 -0.42 -0.47 16 37 H 0.06 0.02 8.14 -51.93 -0.42 -0.40 16 38 H 0.41 -1.63 8.81 -40.82 -0.36 -1.99 16 39 H 0.10 -0.47 8.14 -51.93 -0.42 -0.90 16 40 H 0.11 -0.46 8.10 -51.93 -0.42 -0.88 16 41 H 0.16 0.09 8.06 -52.49 -0.42 -0.33 16 42 H 0.08 -0.19 7.90 -51.93 -0.41 -0.60 16 43 H 0.38 -1.39 8.74 45.56 0.40 -0.99 16 44 H -0.25 0.15 6.74 56.52 0.38 0.53 16 45 H -0.25 0.13 7.11 56.52 0.40 0.53 16 46 H 0.15 -0.63 4.89 -52.49 -0.26 -0.88 16 47 H 0.15 -0.84 6.56 -52.49 -0.34 -1.18 16 48 H 0.12 -0.27 7.53 -51.93 -0.39 -0.66 16 49 H 0.10 -0.39 5.95 -51.93 -0.31 -0.70 16 LS Contribution 407.72 15.07 6.14 6.14 Total: 0.00 -11.90 407.72 -11.53 -23.43 By element: Atomic # 1 Polarization: -7.09 SS G_CDS: -6.54 Total: -13.63 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: -1.33 Total: 2.85 kcal Atomic # 7 Polarization: 1.27 SS G_CDS: -0.31 Total: 0.97 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: -3.85 Total: -13.36 kcal Atomic # 9 Polarization: -0.31 SS G_CDS: 0.04 Total: -0.27 kcal Atomic # 14 Polarization: -1.95 SS G_CDS: -5.13 Total: -7.08 kcal Atomic # 16 Polarization: 1.50 SS G_CDS: -0.55 Total: 0.95 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -11.90 -11.53 -23.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_11680700_17701012.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -160.124 kcal (2) G-P(sol) polarization free energy of solvation -11.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds