Wall clock time and date at job start Sat Mar 6 2021 00:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47235 * 2 1 4 4 C 1.52998 * 109.46852 * 239.99926 * 2 1 3 5 5 O 1.45202 * 109.46990 * 120.00328 * 2 1 3 6 6 C 1.34638 * 116.99809 * 59.99761 * 5 2 1 7 7 O 1.21509 * 120.00379 * 359.97438 * 6 5 2 8 8 N 1.34777 * 119.99735 * 180.02562 * 6 5 2 9 9 C 1.46503 * 120.00046 * 180.02562 * 8 6 5 10 10 H 1.09001 * 112.90464 * 23.74485 * 9 8 6 11 11 C 1.53778 * 113.61449 * 154.99793 * 9 8 6 12 12 C 1.53784 * 87.08432 * 89.11520 * 11 9 8 13 13 H 1.09004 * 113.61404 * 270.80310 * 12 11 9 14 14 S 1.81395 * 113.61696 * 139.98046 * 12 11 9 15 15 O 1.42097 * 110.54530 * 73.37609 * 14 12 11 16 16 O 1.42101 * 110.54141 * 296.62814 * 14 12 11 17 17 O 1.52204 * 104.44982 * 185.00231 * 14 12 11 18 18 C 1.35899 * 113.99641 * 75.00132 * 17 14 12 19 19 C 1.38666 * 120.04601 * 90.00511 * 18 17 14 20 20 C 1.38385 * 119.92011 * 180.02562 * 19 18 17 21 21 F 1.35103 * 119.99246 * 180.02562 * 20 19 18 22 22 C 1.38469 * 120.00782 * 359.97438 * 20 19 18 23 23 C 1.50697 * 119.95924 * 179.97438 * 22 20 19 24 24 O 1.42895 * 109.47590 * 285.00304 * 23 22 20 25 25 Si 1.86300 * 109.47007 * 165.00004 * 23 22 20 26 26 C 1.38255 * 120.08365 * 0.26098 * 22 20 19 27 27 C 1.38131 * 120.08004 * 359.48191 * 26 22 20 28 28 C 1.53780 * 113.61253 * 252.49352 * 9 8 6 29 29 H 1.08996 * 109.46724 * 299.99952 * 1 2 3 30 30 H 1.09007 * 109.46820 * 59.99678 * 1 2 3 31 31 H 1.08996 * 109.47535 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46967 * 180.02562 * 3 2 1 33 33 H 1.08997 * 109.47079 * 300.00264 * 3 2 1 34 34 H 1.09004 * 109.46947 * 60.00209 * 3 2 1 35 35 H 1.08996 * 109.47207 * 300.00392 * 4 2 1 36 36 H 1.09000 * 109.47396 * 60.00347 * 4 2 1 37 37 H 1.09000 * 109.47077 * 180.02562 * 4 2 1 38 38 H 0.97006 * 119.99872 * 0.02562 * 8 6 5 39 39 H 1.09001 * 113.61627 * 334.56316 * 11 9 8 40 40 H 1.08998 * 113.68989 * 203.67723 * 11 9 8 41 41 H 1.07999 * 120.03332 * 359.97438 * 19 18 17 42 42 H 1.09001 * 109.46613 * 45.00443 * 23 22 20 43 43 H 0.96695 * 114.00385 * 180.02562 * 24 23 22 44 44 H 1.48506 * 110.00048 * 60.00676 * 25 23 22 45 45 H 1.48502 * 109.99996 * 181.32001 * 25 23 22 46 46 H 1.08000 * 119.96147 * 179.72230 * 26 22 20 47 47 H 1.07999 * 120.00757 * 180.23444 * 27 26 22 48 48 H 1.08997 * 113.61521 * 156.33254 * 28 9 8 49 49 H 1.09007 * 113.61613 * 25.43242 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6846 1.1855 6 6 1.6522 -1.9724 1.3382 7 8 0.9508 -2.5095 0.5039 8 7 2.0671 -2.6655 2.4170 9 6 1.6739 -4.0670 2.5830 10 1 1.4212 -4.5512 1.6397 11 6 2.6469 -4.8811 3.4521 12 6 1.8053 -4.4461 4.6634 13 1 2.1347 -3.5076 5.1096 14 16 1.5612 -5.7612 5.8887 15 8 2.7596 -5.9940 6.6158 16 8 0.8257 -6.8382 5.3243 17 8 0.6125 -5.1547 6.9128 18 6 -0.6763 -5.0702 6.4903 19 6 -1.5526 -6.1201 6.7201 20 6 -2.8643 -6.0315 6.2882 21 9 -3.7194 -7.0533 6.5118 22 6 -3.3008 -4.8953 5.6280 23 6 -4.7293 -4.8002 5.1577 24 8 -4.9052 -5.6189 3.9998 25 14 -5.1268 -3.0303 4.7331 26 6 -2.4261 -3.8504 5.3945 27 6 -1.1174 -3.9329 5.8287 28 6 0.6272 -4.2864 3.6880 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1301 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6768 1.9563 0.8900 35 1 1.6766 -1.7489 -1.2493 36 1 1.6767 -0.2074 -2.1392 37 1 3.1300 -0.7217 -1.2490 38 1 2.6262 -2.2364 3.0836 39 1 3.6620 -4.4839 3.4603 40 1 2.6137 -5.9534 3.2597 41 1 -1.2114 -7.0062 7.2347 42 1 -5.3959 -5.1424 5.9493 43 1 -5.8032 -5.6058 3.6415 44 1 -4.2247 -2.5518 3.6548 45 1 -6.5422 -2.9179 4.2982 46 1 -2.7674 -2.9670 4.8754 47 1 -0.4361 -3.1144 5.6489 48 1 0.0405 -5.1960 3.5593 49 1 0.0115 -3.4090 3.8867 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_11680700_17701012.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 00:20:38 Heat of formation + Delta-G solvation = -188.227523 kcal Electronic energy + Delta-G solvation = -38323.045248 eV Core-core repulsion = 33068.358784 eV Total energy + Delta-G solvation = -5254.686464 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 404.128 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -50.16661 -42.39009 -41.95558 -40.43471 -39.67109 -38.50976 -37.88768 -37.64674 -37.39195 -35.36443 -34.01998 -32.70058 -32.01163 -28.36769 -28.30037 -27.36887 -27.13320 -27.07468 -24.49575 -23.93359 -23.49652 -21.94138 -21.28598 -20.84809 -19.93907 -19.41182 -18.93133 -18.88765 -18.68971 -17.91773 -17.65385 -17.53864 -17.30160 -17.18755 -16.83859 -16.65956 -16.17314 -15.84629 -15.81095 -15.47498 -15.37421 -15.33015 -15.18132 -14.61327 -14.39500 -14.27574 -14.21044 -14.06925 -13.91588 -13.87678 -13.77344 -13.51466 -13.38601 -13.34570 -13.22871 -13.14662 -12.93405 -12.92151 -12.86581 -12.54165 -12.35624 -12.33586 -12.13142 -11.97587 -11.85169 -11.41356 -11.37678 -11.13866 -10.58547 -10.36113 -10.33219 -9.96488 -4.93152 -1.24399 -0.34926 -0.19405 0.81524 1.07160 1.20763 1.59712 1.69871 1.91778 2.00439 2.32578 2.58190 2.88379 2.93743 3.07625 3.09791 3.19513 3.39508 3.44808 3.52875 3.58812 3.73916 3.76525 3.79441 3.79710 3.92332 3.94377 4.27165 4.35169 4.40003 4.44007 4.49619 4.56927 4.60726 4.61390 4.63468 4.65464 4.72626 4.74227 4.77160 4.80617 4.82957 4.88204 4.89307 4.90337 5.12216 5.26358 5.27371 5.36540 5.43596 5.57495 6.35485 6.50340 7.31280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.130 3.870 3 C -0.139 4.139 4 C -0.183 4.183 5 O -0.365 6.365 6 C 0.647 3.353 7 O -0.590 6.590 8 N -0.680 5.680 9 C 0.152 3.848 10 H 0.107 0.893 11 C -0.114 4.114 12 C -0.621 4.621 13 H 0.200 0.800 14 S 2.595 3.405 15 O -0.964 6.964 16 O -0.972 6.972 17 O -0.661 6.661 18 C 0.088 3.912 19 C -0.146 4.146 20 C 0.123 3.877 21 F -0.135 7.135 22 C -0.093 4.093 23 C -0.103 4.103 24 O -0.556 6.556 25 Si 0.785 3.215 26 C -0.069 4.069 27 C -0.115 4.115 28 C -0.137 4.137 29 H 0.066 0.934 30 H 0.083 0.917 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.096 0.904 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.084 0.916 37 H 0.061 0.939 38 H 0.421 0.579 39 H 0.121 0.879 40 H 0.116 0.884 41 H 0.147 0.853 42 H 0.089 0.911 43 H 0.398 0.602 44 H -0.270 1.270 45 H -0.287 1.287 46 H 0.180 0.820 47 H 0.193 0.807 48 H 0.111 0.889 49 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.359 9.758 -0.411 9.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.094 3.906 3 C -0.196 4.196 4 C -0.240 4.240 5 O -0.280 6.280 6 C 0.401 3.599 7 O -0.480 6.480 8 N -0.340 5.340 9 C 0.046 3.954 10 H 0.125 0.875 11 C -0.153 4.153 12 C -0.732 4.732 13 H 0.217 0.783 14 S 2.695 3.305 15 O -0.962 6.962 16 O -0.970 6.970 17 O -0.620 6.620 18 C 0.046 3.954 19 C -0.167 4.167 20 C 0.103 3.897 21 F -0.113 7.113 22 C -0.095 4.095 23 C -0.210 4.210 24 O -0.366 6.366 25 Si 0.687 3.313 26 C -0.087 4.087 27 C -0.135 4.135 28 C -0.177 4.177 29 H 0.085 0.915 30 H 0.102 0.898 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.114 0.886 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.103 0.897 37 H 0.080 0.920 38 H 0.259 0.741 39 H 0.140 0.860 40 H 0.134 0.866 41 H 0.165 0.835 42 H 0.107 0.893 43 H 0.249 0.751 44 H -0.197 1.197 45 H -0.214 1.214 46 H 0.196 0.804 47 H 0.210 0.790 48 H 0.129 0.871 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.207 9.354 -0.788 9.464 hybrid contribution -0.355 -1.302 -0.384 1.403 sum -1.562 8.052 -1.172 8.285 Atomic orbital electron populations 1.22484 0.93912 1.03792 1.03622 1.22319 0.94489 0.92446 0.81371 1.21894 1.02438 0.90943 1.04283 1.22495 1.01659 1.02330 0.97492 1.86314 1.71460 1.23082 1.47131 1.18286 0.78546 0.80836 0.82222 1.90937 1.41973 1.70859 1.44274 1.44214 1.55139 1.11365 1.23277 1.21551 0.94899 0.79691 0.99265 0.87516 1.23168 1.00362 1.02414 0.89355 1.32221 1.08691 1.20080 1.12190 0.78315 1.05469 0.73459 0.76617 0.74929 1.93609 1.47398 1.84960 1.70271 1.93647 1.69964 1.53413 1.80001 1.85699 1.26706 1.87054 1.62538 1.17783 0.79534 0.96414 1.01652 1.21328 0.92418 1.00615 1.02334 1.17284 0.86995 0.85689 0.99699 1.91525 1.69399 1.57761 1.92633 1.19818 0.96953 0.93741 0.98984 1.25241 0.94636 1.09916 0.91193 1.86556 1.37144 1.68320 1.44622 0.94002 0.77443 0.73926 0.85954 1.21184 0.91413 0.98683 0.97399 1.21790 0.97864 0.97086 0.96716 1.23672 0.94955 1.06136 0.92896 0.91477 0.89804 0.91651 0.91259 0.88573 0.90891 0.91677 0.89706 0.91972 0.74064 0.86034 0.86562 0.83476 0.89317 0.75096 1.19656 1.21385 0.80357 0.78988 0.87099 0.86315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 0.00 8.37 71.98 0.60 0.61 16 2 C 0.13 -0.03 1.13 -10.79 -0.01 -0.04 16 3 C -0.14 0.65 8.85 71.98 0.64 1.29 16 4 C -0.18 -0.18 8.37 71.98 0.60 0.42 16 5 O -0.37 -0.38 9.94 -55.47 -0.55 -0.93 16 6 C 0.65 1.17 8.06 129.79 1.05 2.21 16 7 O -0.59 -4.64 11.48 19.81 0.23 -4.41 16 8 N -0.68 3.73 5.27 -567.61 -2.99 0.74 16 9 C 0.15 -0.86 4.32 45.52 0.20 -0.66 16 10 H 0.11 -0.20 7.47 -2.39 -0.02 -0.22 16 11 C -0.11 0.94 7.42 31.12 0.23 1.17 16 12 C -0.62 5.21 3.85 31.12 0.12 5.33 16 13 H 0.20 -3.17 8.14 -2.38 -0.02 -3.18 16 14 S 2.59 4.61 5.15 -56.49 -0.29 4.32 16 15 O -0.96 -9.41 18.09 -118.57 -2.15 -11.55 16 16 O -0.97 -7.15 15.58 -118.57 -1.85 -8.99 16 17 O -0.66 -0.96 10.05 -61.50 -0.62 -1.58 16 18 C 0.09 0.04 4.63 22.50 0.10 0.14 16 19 C -0.15 -0.64 9.03 22.41 0.20 -0.44 16 20 C 0.12 0.55 7.24 22.36 0.16 0.71 16 21 F -0.13 -1.08 16.75 44.97 0.75 -0.32 16 22 C -0.09 0.02 5.30 -19.81 -0.10 -0.08 16 23 C -0.10 0.23 2.44 71.23 0.17 0.40 16 24 O -0.56 -0.84 12.86 -148.98 -1.92 -2.75 16 25 Si 0.78 -5.28 30.20 68.60 2.07 -3.21 16 26 C -0.07 0.40 8.65 22.25 0.19 0.59 16 27 C -0.11 0.74 6.70 22.37 0.15 0.89 16 28 C -0.14 0.99 5.11 31.12 0.16 1.15 16 29 H 0.07 -0.10 8.14 -2.39 -0.02 -0.12 16 30 H 0.08 -0.22 8.14 -2.38 -0.02 -0.24 16 31 H 0.06 0.33 5.88 -2.39 -0.01 0.32 16 32 H 0.07 -0.32 8.14 -2.39 -0.02 -0.34 16 33 H 0.10 -0.70 8.14 -2.39 -0.02 -0.72 16 34 H 0.07 -0.39 8.14 -2.39 -0.02 -0.41 16 35 H 0.06 0.40 5.88 -2.39 -0.01 0.39 16 36 H 0.08 -0.15 8.14 -2.39 -0.02 -0.17 16 37 H 0.06 0.03 8.14 -2.39 -0.02 0.01 16 38 H 0.42 -4.59 8.81 -92.70 -0.82 -5.41 16 39 H 0.12 -1.42 8.14 -2.39 -0.02 -1.43 16 40 H 0.12 -0.97 8.10 -2.39 -0.02 -0.99 16 41 H 0.15 0.71 8.06 -2.91 -0.02 0.69 16 42 H 0.09 -0.35 7.90 -2.39 -0.02 -0.37 16 43 H 0.40 -2.54 8.74 -74.06 -0.65 -3.19 16 44 H -0.27 0.82 6.74 99.48 0.67 1.49 16 45 H -0.29 0.40 7.11 99.48 0.71 1.11 16 46 H 0.18 -1.97 4.89 -2.91 -0.01 -1.98 16 47 H 0.19 -2.86 6.56 -2.91 -0.02 -2.88 16 48 H 0.11 -0.54 7.53 -2.39 -0.02 -0.56 16 49 H 0.12 -1.31 5.95 -2.38 -0.01 -1.33 16 Total: 0.00 -31.24 407.72 -3.28 -34.52 By element: Atomic # 1 Polarization: -19.09 SS G_CDS: -0.44 Total: -19.53 kcal Atomic # 6 Polarization: 9.25 SS G_CDS: 4.46 Total: 13.71 kcal Atomic # 7 Polarization: 3.73 SS G_CDS: -2.99 Total: 0.74 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: -6.85 Total: -30.23 kcal Atomic # 9 Polarization: -1.08 SS G_CDS: 0.75 Total: -0.32 kcal Atomic # 14 Polarization: -5.28 SS G_CDS: 2.07 Total: -3.21 kcal Atomic # 16 Polarization: 4.61 SS G_CDS: -0.29 Total: 4.32 kcal Total: -31.24 -3.28 -34.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_11680700_17701012.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.708 kcal (2) G-P(sol) polarization free energy of solvation -31.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds