Wall clock time and date at job start Sat Mar 6 2021 00:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.34772 * 1 3 3 O 1.21285 * 120.00051 * 2 1 4 4 C 1.50703 * 120.00459 * 179.97438 * 2 1 3 5 5 H 1.09000 * 112.84604 * 48.80743 * 4 2 1 6 6 C 1.53784 * 113.61518 * 179.97438 * 4 2 1 7 7 C 1.53777 * 87.07852 * 139.98356 * 6 4 2 8 8 H 1.08995 * 113.61695 * 89.19945 * 7 6 4 9 9 N 1.46503 * 113.61548 * 220.02042 * 7 6 4 10 10 S 1.65601 * 120.00290 * 213.47172 * 9 7 6 11 11 O 1.42094 * 106.39900 * 311.45806 * 10 9 7 12 12 O 1.42100 * 106.40163 * 178.53849 * 10 9 7 13 13 C 1.76195 * 107.21558 * 64.99966 * 10 9 7 14 14 C 1.38228 * 120.00180 * 90.00524 * 13 10 9 15 15 C 1.38241 * 120.00172 * 179.97438 * 14 13 10 16 16 C 1.38230 * 119.99985 * 359.97438 * 15 14 13 17 17 C 1.50699 * 120.00144 * 179.97438 * 16 15 14 18 18 O 1.42896 * 109.47261 * 65.00061 * 17 16 15 19 19 Si 1.86300 * 109.47060 * 185.00255 * 17 16 15 20 20 C 1.38244 * 119.99836 * 0.25473 * 16 15 14 21 21 C 1.38230 * 119.99979 * 359.47181 * 20 16 15 22 22 C 1.53781 * 87.17667 * 334.60851 * 7 6 4 23 23 H 0.97007 * 119.99324 * 180.02562 * 1 2 3 24 24 H 0.96989 * 120.00462 * 0.02562 * 1 2 3 25 25 H 1.09007 * 113.61143 * 25.44098 * 6 4 2 26 26 H 1.09000 * 113.69372 * 254.54320 * 6 4 2 27 27 H 0.97008 * 120.00058 * 33.47365 * 9 7 6 28 28 H 1.08004 * 119.99980 * 359.97041 * 14 13 10 29 29 H 1.08003 * 119.99813 * 179.97438 * 15 14 13 30 30 H 1.08997 * 109.47119 * 304.99914 * 17 16 15 31 31 H 0.96693 * 114.00306 * 179.97438 * 18 17 16 32 32 H 1.48506 * 110.00048 * 178.68391 * 19 17 16 33 33 H 1.48502 * 109.99996 * 299.99717 * 19 17 16 34 34 H 1.07999 * 119.99527 * 179.72270 * 20 16 15 35 35 H 1.07996 * 120.00183 * 180.27285 * 21 20 16 36 36 H 1.09005 * 113.61554 * 139.93569 * 22 7 6 37 37 H 1.08999 * 113.62144 * 270.84632 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3477 0.0000 0.0000 3 8 1.9542 1.0504 0.0000 4 6 2.1013 -1.3051 0.0006 5 1 1.7401 -2.0027 -0.7550 6 6 3.6296 -1.1339 -0.0001 7 6 3.6830 -2.3109 0.9882 8 1 3.7554 -3.2847 0.5040 9 7 4.6666 -2.1336 2.0593 10 16 5.4670 -3.4465 2.6742 11 8 4.4762 -4.4266 2.9516 12 8 6.3622 -2.9462 3.6579 13 6 6.4662 -4.1017 1.3793 14 6 7.7614 -3.6497 1.2097 15 6 8.5455 -4.1641 0.1940 16 6 8.0345 -5.1309 -0.6516 17 6 8.8891 -5.6913 -1.7592 18 8 9.9927 -6.4030 -1.1957 19 14 7.8707 -6.8501 -2.8035 20 6 6.7376 -5.5794 -0.4849 21 6 5.9554 -5.0692 0.5342 22 6 2.2503 -1.9321 1.3987 23 1 -0.4849 -0.8402 0.0004 24 1 -0.4850 0.8399 -0.0004 25 1 3.9633 -0.1887 0.4282 26 1 4.0942 -1.3502 -0.9622 27 1 4.8491 -1.2471 2.4085 28 1 8.1608 -2.8946 1.8706 29 1 9.5574 -3.8107 0.0612 30 1 9.2612 -4.8756 -2.3791 31 1 10.5863 -6.7921 -1.8523 32 1 8.6934 -7.3851 -3.9182 33 1 7.3575 -7.9668 -1.9699 34 1 6.3369 -6.3315 -1.1484 35 1 4.9437 -5.4228 0.6672 36 1 1.6015 -2.7924 1.5638 37 1 2.2060 -1.2055 2.2100 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_11684970_13421422.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 00:23:32 Heat of formation + Delta-G solvation = -95.766301 kcal Electronic energy + Delta-G solvation = -23858.717866 eV Core-core repulsion = 20116.046127 eV Total energy + Delta-G solvation = -3742.671739 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 313.086 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.24501 -40.61493 -38.88714 -38.33584 -37.83919 -37.02050 -34.64937 -33.92213 -33.16408 -32.19977 -27.23873 -26.84373 -26.61448 -24.09816 -22.82696 -22.28164 -20.94369 -20.31447 -19.26401 -18.66279 -18.50339 -18.33010 -17.80041 -17.20331 -16.95136 -16.57746 -16.29930 -15.84565 -15.78280 -15.37466 -15.36152 -14.64714 -14.52549 -14.33561 -14.05060 -13.97014 -13.82246 -13.58528 -13.38903 -13.29365 -13.22082 -12.84734 -12.43071 -12.16567 -11.98901 -11.90903 -11.88599 -11.63487 -10.86333 -10.66132 -10.61246 -10.44315 -10.31661 -10.12981 -4.96865 -0.73947 -0.36929 0.20251 1.22463 1.58025 1.65051 1.88631 1.92998 2.31589 2.68463 2.73364 3.22577 3.24936 3.47755 3.53209 3.66711 3.77322 3.79932 3.83612 3.92318 4.10774 4.19073 4.28323 4.40249 4.43563 4.60932 4.77245 4.78358 4.84926 4.86412 4.94315 4.99323 5.05368 5.11469 5.27101 5.50078 5.70486 5.93114 5.98559 6.50547 6.53064 7.40030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.520 3.480 3 O -0.598 6.598 4 C -0.133 4.133 5 H 0.155 0.845 6 C -0.126 4.126 7 C 0.124 3.876 8 H 0.142 0.858 9 N -1.094 6.094 10 S 2.710 3.290 11 O -0.976 6.976 12 O -0.993 6.993 13 C -0.678 4.678 14 C -0.028 4.028 15 C -0.124 4.124 16 C -0.027 4.027 17 C -0.098 4.098 18 O -0.558 6.558 19 Si 0.772 3.228 20 C -0.141 4.141 21 C -0.021 4.021 22 C -0.135 4.135 23 H 0.419 0.581 24 H 0.403 0.597 25 H 0.082 0.918 26 H 0.097 0.903 27 H 0.427 0.573 28 H 0.147 0.853 29 H 0.142 0.858 30 H 0.105 0.895 31 H 0.398 0.602 32 H -0.286 1.286 33 H -0.295 1.295 34 H 0.156 0.844 35 H 0.167 0.833 36 H 0.106 0.894 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.419 -1.399 -7.827 9.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C 0.306 3.694 3 O -0.479 6.479 4 C -0.154 4.154 5 H 0.173 0.827 6 C -0.166 4.166 7 C 0.017 3.983 8 H 0.159 0.841 9 N -0.854 5.854 10 S 2.801 3.199 11 O -0.966 6.966 12 O -0.983 6.983 13 C -0.766 4.766 14 C -0.048 4.048 15 C -0.143 4.143 16 C -0.028 4.028 17 C -0.206 4.206 18 O -0.368 6.368 19 Si 0.676 3.324 20 C -0.159 4.159 21 C -0.040 4.040 22 C -0.175 4.175 23 H 0.250 0.750 24 H 0.234 0.766 25 H 0.101 0.899 26 H 0.115 0.885 27 H 0.264 0.736 28 H 0.165 0.835 29 H 0.160 0.840 30 H 0.122 0.878 31 H 0.249 0.751 32 H -0.213 1.213 33 H -0.223 1.223 34 H 0.173 0.827 35 H 0.184 0.816 36 H 0.124 0.876 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.346 -1.971 -6.781 8.292 hybrid contribution 1.401 0.178 -0.199 1.426 sum -2.946 -1.793 -6.980 7.786 Atomic orbital electron populations 1.43849 1.06625 1.13721 1.76087 1.20941 0.83313 0.91325 0.73798 1.90745 1.69468 1.35603 1.52102 1.22743 0.96427 0.94789 1.01468 0.82701 1.23284 0.93802 0.98616 1.00854 1.22557 0.87213 1.01111 0.87414 0.84066 1.55336 1.53756 1.24431 1.51884 1.01207 0.72734 0.72914 0.73014 1.93574 1.59227 1.60498 1.83288 1.93565 1.66380 1.80419 1.57981 1.30858 1.10369 1.13335 1.22056 1.21129 0.91618 0.96567 0.95438 1.21340 1.00737 0.97200 0.95036 1.19899 0.93988 0.93877 0.95002 1.25204 0.93453 1.03053 0.98916 1.86540 1.39034 1.72876 1.38391 0.94116 0.83428 0.78949 0.75863 1.21395 0.93967 1.01130 0.99424 1.21196 1.00924 0.91165 0.90760 1.23491 0.97336 1.01754 0.94948 0.74980 0.76649 0.89910 0.88477 0.73624 0.83524 0.84036 0.87763 0.75056 1.21295 1.22260 0.82675 0.81554 0.87561 0.90040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 5.96 8.87 -173.53 -1.54 4.42 16 2 C 0.52 -0.26 7.63 87.66 0.67 0.41 16 3 O -0.60 -6.24 16.74 -3.05 -0.05 -6.29 16 4 C -0.13 1.00 4.15 -10.95 -0.05 0.96 16 5 H 0.16 -2.23 8.14 -2.39 -0.02 -2.25 16 6 C -0.13 0.70 7.19 31.12 0.22 0.92 16 7 C 0.12 -0.86 4.34 45.52 0.20 -0.66 16 8 H 0.14 -1.67 7.76 -2.39 -0.02 -1.69 16 9 N -1.09 3.86 5.79 -167.20 -0.97 2.90 16 10 S 2.71 6.74 5.68 -56.49 -0.32 6.42 16 11 O -0.98 -6.70 17.04 -128.00 -2.18 -8.88 16 12 O -0.99 -9.78 17.28 -128.00 -2.21 -11.99 16 13 C -0.68 -0.61 5.95 22.27 0.13 -0.48 16 14 C -0.03 -0.05 9.52 22.27 0.21 0.16 16 15 C -0.12 -0.14 9.69 22.27 0.22 0.08 16 16 C -0.03 0.00 5.38 -19.87 -0.11 -0.10 16 17 C -0.10 0.33 2.79 71.24 0.20 0.53 16 18 O -0.56 -0.14 12.81 -148.98 -1.91 -2.04 16 19 Si 0.77 -3.96 29.84 68.60 2.05 -1.91 16 20 C -0.14 0.30 8.67 22.27 0.19 0.49 16 21 C -0.02 0.04 9.23 22.27 0.21 0.24 16 22 C -0.14 0.96 7.44 31.18 0.23 1.19 16 23 H 0.42 -5.77 8.83 -92.70 -0.82 -6.59 16 24 H 0.40 -2.76 8.93 -92.72 -0.83 -3.58 16 25 H 0.08 -0.04 7.43 -2.38 -0.02 -0.06 16 26 H 0.10 -0.80 8.14 -2.39 -0.02 -0.82 16 27 H 0.43 -2.13 8.94 -96.74 -0.86 -2.99 16 28 H 0.15 0.01 7.62 -2.91 -0.02 -0.01 16 29 H 0.14 -0.15 8.06 -2.91 -0.02 -0.18 16 30 H 0.10 -0.81 7.96 -2.39 -0.02 -0.83 16 31 H 0.40 -3.11 8.74 -74.06 -0.65 -3.76 16 32 H -0.29 0.16 7.11 99.48 0.71 0.86 16 33 H -0.30 -0.60 7.05 99.48 0.70 0.10 16 34 H 0.16 -1.03 4.87 -2.91 -0.01 -1.05 16 35 H 0.17 -1.12 7.62 -2.91 -0.02 -1.14 16 36 H 0.11 -1.09 8.14 -2.38 -0.02 -1.11 16 37 H 0.08 -0.33 8.10 -2.39 -0.02 -0.35 16 Total: 0.00 -32.29 329.48 -6.77 -39.06 By element: Atomic # 1 Polarization: -23.46 SS G_CDS: -1.96 Total: -25.43 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: 2.33 Total: 3.75 kcal Atomic # 7 Polarization: 9.82 SS G_CDS: -2.51 Total: 7.32 kcal Atomic # 8 Polarization: -22.86 SS G_CDS: -6.35 Total: -29.21 kcal Atomic # 14 Polarization: -3.96 SS G_CDS: 2.05 Total: -1.91 kcal Atomic # 16 Polarization: 6.74 SS G_CDS: -0.32 Total: 6.42 kcal Total: -32.29 -6.77 -39.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_11684970_13421422.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.707 kcal (2) G-P(sol) polarization free energy of solvation -32.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds