Wall clock time and date at job start Sat Mar 6 2021 00:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.34777 * 1 3 3 O 1.21283 * 120.00463 * 2 1 4 4 C 1.50700 * 119.99675 * 179.72123 * 2 1 3 5 5 H 1.09002 * 112.84997 * 309.94285 * 4 2 1 6 6 C 1.53780 * 113.61807 * 81.14178 * 4 2 1 7 7 C 1.53956 * 87.02124 * 139.94964 * 6 4 2 8 8 H 1.09004 * 113.53217 * 89.19032 * 7 6 4 9 9 N 1.46496 * 113.74172 * 220.05622 * 7 6 4 10 10 S 1.65598 * 120.00069 * 242.59794 * 9 7 6 11 11 O 1.42095 * 106.40553 * 178.53992 * 10 9 7 12 12 O 1.42099 * 106.40233 * 311.46430 * 10 9 7 13 13 C 1.76208 * 107.21841 * 65.00154 * 10 9 7 14 14 C 1.33384 * 125.20162 * 90.00094 * 13 10 9 15 15 C 1.50705 * 122.54160 * 359.95486 * 14 13 10 16 16 O 1.42902 * 109.47078 * 285.00304 * 15 14 13 17 17 Si 1.86302 * 109.47163 * 165.00142 * 15 14 13 18 18 C 1.38424 * 114.92158 * 179.97438 * 14 13 10 19 19 C 1.33388 * 114.91892 * 359.97438 * 18 14 13 20 20 S 1.75875 * 125.20302 * 269.69614 * 13 10 9 21 21 C 1.53782 * 113.61302 * 178.75115 * 4 2 1 22 22 H 0.97004 * 119.99652 * 0.02562 * 1 2 3 23 23 H 0.97000 * 119.99894 * 179.97438 * 1 2 3 24 24 H 1.08996 * 113.61476 * 254.53578 * 6 4 2 25 25 H 1.09008 * 113.61192 * 25.43231 * 6 4 2 26 26 H 0.97002 * 120.00450 * 62.60170 * 9 7 6 27 27 H 1.09000 * 109.46675 * 45.00400 * 15 14 13 28 28 H 0.96699 * 113.99703 * 299.99555 * 16 15 14 29 29 H 1.48498 * 110.00000 * 180.02562 * 17 15 14 30 30 H 1.48499 * 110.00121 * 301.32187 * 17 15 14 31 31 H 1.08000 * 122.54333 * 180.02562 * 18 14 13 32 32 H 1.08001 * 125.20180 * 180.02562 * 19 18 14 33 33 H 1.08995 * 113.61641 * 334.56108 * 21 4 2 34 34 H 1.09003 * 113.61810 * 105.38826 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3478 0.0000 0.0000 3 8 1.9543 1.0503 0.0000 4 6 2.1012 -1.3051 0.0064 5 1 1.7543 -1.9904 0.7798 6 6 2.2213 -1.9539 -1.3827 7 6 3.6636 -2.3275 -0.9949 8 1 3.7439 -3.2935 -0.4961 9 7 4.6278 -2.1690 -2.0864 10 16 5.4436 -3.4873 -2.6686 11 8 6.2639 -3.0156 -3.7286 12 8 5.9565 -4.1743 -1.5354 13 6 4.2505 -4.5573 -3.4011 14 6 3.8639 -4.5190 -4.6771 15 6 4.4212 -3.5251 -5.6635 16 8 3.8547 -2.2372 -5.4136 17 14 3.9973 -4.0647 -7.3955 18 6 2.9118 -5.4610 -5.0267 19 6 2.5256 -6.2646 -4.0346 20 16 3.3929 -5.8442 -2.5634 21 6 3.6292 -1.1345 -0.0252 22 1 -0.4850 0.8401 -0.0004 23 1 -0.4850 -0.8401 -0.0004 24 1 1.5680 -2.8155 -1.5201 25 1 2.1611 -1.2404 -2.2046 26 1 4.7884 -1.2919 -2.4682 27 1 5.5044 -3.4731 -5.5540 28 1 2.8914 -2.2091 -5.4936 29 1 4.5418 -3.0932 -8.3777 30 1 4.5537 -5.4165 -7.6569 31 1 2.5125 -5.5399 -6.0270 32 1 1.7950 -7.0552 -4.1223 33 1 3.9546 -0.1966 -0.4752 34 1 4.1108 -1.3342 0.9321 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_11684970_13652106.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 00:23:35 Heat of formation + Delta-G solvation = -85.624789 kcal Electronic energy + Delta-G solvation = -23390.665901 eV Core-core repulsion = 19737.586177 eV Total energy + Delta-G solvation = -3653.079724 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 319.043 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.27928 -40.04992 -38.91329 -38.32565 -37.14684 -36.98110 -34.66446 -33.94586 -31.36015 -27.96082 -26.87959 -26.66632 -24.23426 -22.33749 -21.63442 -20.61696 -20.11703 -19.42792 -18.67407 -18.38500 -18.21996 -17.77975 -16.83133 -16.59298 -16.38336 -16.26479 -15.92257 -15.65244 -15.38381 -15.06721 -14.56937 -14.25317 -13.97318 -13.94704 -13.74473 -13.59699 -13.42413 -13.35249 -13.26696 -12.82916 -12.48341 -12.22298 -12.11062 -11.97141 -11.80026 -11.65768 -10.88797 -10.61742 -10.54368 -10.46138 -10.33700 -9.58912 -5.06527 -0.83501 -0.57179 0.33292 0.76611 1.23406 1.31955 1.63689 1.64406 1.92524 1.98869 2.55438 2.69308 3.31485 3.41512 3.47164 3.55870 3.58007 3.71608 3.87326 4.08575 4.13626 4.25825 4.40979 4.55616 4.71281 4.73698 4.80155 4.81751 4.97332 4.99079 5.03561 5.17733 5.44744 5.92960 5.94858 6.52930 6.77046 7.40021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.523 3.477 3 O -0.598 6.598 4 C -0.132 4.132 5 H 0.152 0.848 6 C -0.122 4.122 7 C 0.118 3.882 8 H 0.128 0.872 9 N -1.086 6.086 10 S 2.722 3.278 11 O -0.981 6.981 12 O -0.988 6.988 13 C -0.798 4.798 14 C 0.013 3.987 15 C -0.108 4.108 16 O -0.538 6.538 17 Si 0.801 3.199 18 C -0.171 4.171 19 C -0.141 4.141 20 S 0.219 5.781 21 C -0.131 4.131 22 H 0.404 0.596 23 H 0.419 0.581 24 H 0.113 0.887 25 H 0.092 0.908 26 H 0.427 0.573 27 H 0.119 0.881 28 H 0.396 0.604 29 H -0.300 1.300 30 H -0.284 1.284 31 H 0.185 0.815 32 H 0.213 0.787 33 H 0.084 0.916 34 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.719 -5.596 -0.682 13.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C 0.308 3.692 3 O -0.479 6.479 4 C -0.153 4.153 5 H 0.169 0.831 6 C -0.161 4.161 7 C 0.011 3.989 8 H 0.146 0.854 9 N -0.846 5.846 10 S 2.812 3.188 11 O -0.971 6.971 12 O -0.978 6.978 13 C -1.002 5.002 14 C -0.006 4.006 15 C -0.219 4.219 16 O -0.345 6.345 17 Si 0.705 3.295 18 C -0.200 4.200 19 C -0.279 4.279 20 S 0.486 5.514 21 C -0.171 4.171 22 H 0.235 0.765 23 H 0.251 0.749 24 H 0.132 0.868 25 H 0.111 0.889 26 H 0.265 0.735 27 H 0.137 0.863 28 H 0.246 0.754 29 H -0.228 1.228 30 H -0.211 1.211 31 H 0.202 0.798 32 H 0.230 0.770 33 H 0.102 0.898 34 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -10.393 -6.063 0.316 12.037 hybrid contribution -0.071 0.946 -1.207 1.535 sum -10.464 -5.118 -0.891 11.683 Atomic orbital electron populations 1.43797 1.06376 1.13776 1.76056 1.20827 0.83389 0.91063 0.73885 1.90755 1.69526 1.35592 1.52038 1.22669 0.95622 0.94981 1.02070 0.83085 1.23453 0.95933 1.01879 0.94876 1.22570 0.88433 1.00653 0.87233 0.85449 1.55181 1.58579 1.23658 1.47221 1.00662 0.72892 0.72919 0.72374 1.93521 1.66126 1.80573 1.56924 1.93576 1.77466 1.75035 1.51727 1.35324 1.30588 1.24006 1.10287 1.19339 0.93458 0.95674 0.92098 1.25709 1.01872 0.85465 1.08819 1.86579 1.27686 1.26480 1.93792 0.94206 0.88956 0.75804 0.70496 1.20480 0.99803 0.96966 1.02735 1.26663 1.02622 1.03310 0.95285 1.84346 1.31789 1.24132 1.11156 1.23277 0.94710 0.98561 1.00558 0.76546 0.74893 0.86839 0.88946 0.73531 0.86340 0.75407 1.22770 1.21064 0.79787 0.76972 0.89771 0.89683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 6.60 8.87 -173.53 -1.54 5.06 16 2 C 0.52 -0.14 7.63 87.66 0.67 0.53 16 3 O -0.60 -6.73 16.75 -3.04 -0.05 -6.78 16 4 C -0.13 0.83 4.14 -11.01 -0.05 0.79 16 5 H 0.15 -1.88 8.14 -2.39 -0.02 -1.90 16 6 C -0.12 1.04 7.45 31.18 0.23 1.27 16 7 C 0.12 -0.43 4.42 45.58 0.20 -0.23 16 8 H 0.13 -0.69 7.77 -2.38 -0.02 -0.71 16 9 N -1.09 -0.51 5.79 -166.95 -0.97 -1.47 16 10 S 2.72 18.09 5.72 -56.49 -0.32 17.77 16 11 O -0.98 -12.75 14.92 -128.00 -1.91 -14.66 16 12 O -0.99 -11.98 17.43 -128.00 -2.23 -14.21 16 13 C -0.80 -0.98 6.54 66.72 0.44 -0.55 16 14 C 0.01 -0.02 5.13 -20.92 -0.11 -0.13 16 15 C -0.11 -0.12 1.97 71.24 0.14 0.02 16 16 O -0.54 0.59 12.88 -148.98 -1.92 -1.33 16 17 Si 0.80 -2.25 30.25 68.60 2.08 -0.18 16 18 C -0.17 1.28 8.74 21.22 0.19 1.47 16 19 C -0.14 1.30 11.23 66.72 0.75 2.05 16 20 S 0.22 -0.83 23.21 -56.49 -1.31 -2.14 16 21 C -0.13 0.17 7.18 31.12 0.22 0.40 16 22 H 0.40 -3.08 8.93 -92.71 -0.83 -3.91 16 23 H 0.42 -6.31 8.83 -92.71 -0.82 -7.13 16 24 H 0.11 -1.59 8.14 -2.39 -0.02 -1.61 16 25 H 0.09 -0.63 8.09 -2.38 -0.02 -0.65 16 26 H 0.43 -0.16 8.94 -96.75 -0.87 -1.02 16 27 H 0.12 0.94 5.65 -2.39 -0.01 0.93 16 28 H 0.40 -4.50 8.70 -74.06 -0.64 -5.14 16 29 H -0.30 -1.66 7.11 99.48 0.71 -0.96 16 30 H -0.28 -0.57 7.11 99.48 0.71 0.14 16 31 H 0.19 -2.51 5.73 -2.91 -0.02 -2.52 16 32 H 0.21 -3.45 8.06 -2.91 -0.02 -3.47 16 33 H 0.08 0.28 7.45 -2.39 -0.02 0.26 16 34 H 0.08 -0.15 8.14 -2.39 -0.02 -0.17 16 Total: 0.00 -32.78 317.05 -7.40 -40.19 By element: Atomic # 1 Polarization: -25.96 SS G_CDS: -1.91 Total: -27.87 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: 2.68 Total: 5.63 kcal Atomic # 7 Polarization: 6.09 SS G_CDS: -2.51 Total: 3.59 kcal Atomic # 8 Polarization: -30.87 SS G_CDS: -6.11 Total: -36.98 kcal Atomic # 14 Polarization: -2.25 SS G_CDS: 2.08 Total: -0.18 kcal Atomic # 16 Polarization: 17.26 SS G_CDS: -1.63 Total: 15.63 kcal Total: -32.78 -7.40 -40.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_11684970_13652106.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.440 kcal (2) G-P(sol) polarization free energy of solvation -32.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds