Wall clock time and date at job start Sat Mar 6 2021 00:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.34770 * 1 3 3 O 1.21276 * 120.00373 * 2 1 4 4 C 1.50701 * 120.00018 * 180.02562 * 2 1 3 5 5 H 1.09000 * 112.85324 * 48.79632 * 4 2 1 6 6 C 1.53783 * 113.61753 * 179.97438 * 4 2 1 7 7 C 1.53777 * 87.08383 * 139.97733 * 6 4 2 8 8 H 1.09007 * 113.61112 * 89.20043 * 7 6 4 9 9 N 1.46499 * 113.61720 * 220.01988 * 7 6 4 10 10 S 1.65603 * 119.99938 * 215.22172 * 9 7 6 11 11 O 1.42099 * 106.40396 * 311.44980 * 10 9 7 12 12 O 1.42100 * 106.39986 * 178.52800 * 10 9 7 13 13 C 1.76203 * 107.21557 * 64.99177 * 10 9 7 14 14 C 1.33386 * 122.54195 * 66.99231 * 13 10 9 15 15 C 1.50704 * 125.20257 * 359.97438 * 14 13 10 16 16 O 1.42902 * 109.47049 * 313.56857 * 15 14 13 17 17 Si 1.86298 * 109.47324 * 193.56749 * 15 14 13 18 18 S 1.75878 * 109.59383 * 179.97438 * 14 13 10 19 19 C 1.75885 * 90.97182 * 0.02562 * 18 14 13 20 20 C 1.33382 * 109.59175 * 359.97438 * 19 18 14 21 21 C 1.53784 * 113.61259 * 277.49480 * 4 2 1 22 22 H 0.97001 * 119.99974 * 180.02562 * 1 2 3 23 23 H 0.97002 * 120.00296 * 359.97438 * 1 2 3 24 24 H 1.09004 * 113.60764 * 25.42853 * 6 4 2 25 25 H 1.08998 * 113.69113 * 254.54033 * 6 4 2 26 26 H 0.97001 * 119.99839 * 35.23032 * 9 7 6 27 27 H 1.09007 * 109.46721 * 73.56572 * 15 14 13 28 28 H 0.96700 * 114.00179 * 300.10541 * 16 15 14 29 29 H 1.48504 * 109.99951 * 58.67965 * 17 15 14 30 30 H 1.48496 * 110.00122 * 180.02562 * 17 15 14 31 31 H 1.08000 * 125.20095 * 179.73599 * 19 18 14 32 32 H 1.08001 * 122.54180 * 179.97438 * 20 19 18 33 33 H 1.09002 * 113.61550 * 105.47094 * 21 4 2 34 34 H 1.09001 * 113.61321 * 334.56063 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3477 0.0000 0.0000 3 8 1.9541 1.0502 0.0000 4 6 2.1012 -1.3051 -0.0006 5 1 1.7399 -2.0022 -0.7566 6 6 3.6295 -1.1341 -0.0011 7 6 3.6829 -2.3119 0.9862 8 1 3.7552 -3.2854 0.5011 9 7 4.6665 -2.1355 2.0575 10 16 5.4982 -3.4431 2.6414 11 8 4.5306 -4.4507 2.9014 12 8 6.3862 -2.9440 3.6322 13 6 6.5064 -4.0483 1.3291 14 6 7.5322 -3.3543 0.8337 15 6 7.9684 -1.9916 1.3068 16 8 6.8257 -1.1429 1.4332 17 14 9.1547 -1.2562 0.0729 18 16 8.2978 -4.2729 -0.4560 19 6 7.1473 -5.5863 -0.2441 20 6 6.2940 -5.2800 0.7342 21 6 2.2500 -1.9311 1.3962 22 1 -0.4850 -0.8401 0.0004 23 1 -0.4851 0.8400 0.0004 24 1 3.9632 -0.1893 0.4278 25 1 4.0940 -1.3497 -0.9634 26 1 4.8305 -1.2529 2.4248 27 1 8.4614 -2.0836 2.2747 28 1 6.3361 -1.0170 0.6088 29 1 8.5048 -1.1550 -1.2585 30 1 9.5928 0.0877 0.5282 31 1 7.1315 -6.4993 -0.8209 32 1 5.4973 -5.9425 1.0388 33 1 1.5999 -2.7903 1.5611 34 1 2.2066 -1.2042 2.2073 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_40_11684970_14772022.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 00:23:39 Heat of formation + Delta-G solvation = -71.022544 kcal Electronic energy + Delta-G solvation = -23652.497772 eV Core-core repulsion = 20000.051249 eV Total energy + Delta-G solvation = -3652.446523 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 319.043 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.40668 -39.76517 -38.93422 -38.24478 -37.48429 -36.69338 -34.71511 -33.93784 -31.88745 -27.57168 -27.00173 -26.87258 -24.46176 -22.38807 -21.83785 -20.80301 -20.04758 -19.38801 -18.82333 -18.39119 -18.02870 -17.91539 -17.06886 -16.77729 -16.61555 -16.38715 -15.89091 -15.52123 -15.42199 -15.16025 -14.63247 -14.23615 -14.07899 -13.98804 -13.91869 -13.62828 -13.46185 -13.01585 -12.89678 -12.82269 -12.59343 -12.35330 -12.28086 -12.08013 -11.96919 -11.59297 -11.14303 -10.90375 -10.72515 -10.44573 -10.19521 -9.83989 -5.25152 -0.65459 -0.47883 0.30002 0.57252 0.98073 1.08959 1.41636 1.57013 1.75469 2.06674 2.51922 2.77406 3.01903 3.19014 3.26391 3.31591 3.53726 3.57112 3.62551 3.87959 4.04389 4.12120 4.19374 4.38217 4.49652 4.53322 4.62745 4.68196 4.78010 4.80204 4.86384 5.08376 5.27037 5.73818 5.98825 6.06393 6.28241 7.22796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.528 3.472 3 O -0.541 6.541 4 C -0.140 4.140 5 H 0.120 0.880 6 C -0.129 4.129 7 C 0.129 3.871 8 H 0.117 0.883 9 N -1.091 6.091 10 S 2.713 3.287 11 O -0.959 6.959 12 O -0.947 6.947 13 C -0.669 4.669 14 C -0.098 4.098 15 C -0.069 4.069 16 O -0.517 6.517 17 Si 0.670 3.330 18 S 0.158 5.842 19 C -0.211 4.211 20 C -0.078 4.078 21 C -0.133 4.133 22 H 0.403 0.597 23 H 0.402 0.598 24 H 0.107 0.893 25 H 0.080 0.920 26 H 0.427 0.573 27 H 0.153 0.847 28 H 0.380 0.620 29 H -0.240 1.240 30 H -0.228 1.228 31 H 0.175 0.825 32 H 0.158 0.842 33 H 0.088 0.912 34 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.963 -2.782 -5.234 6.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C 0.313 3.687 3 O -0.418 6.418 4 C -0.162 4.162 5 H 0.138 0.862 6 C -0.169 4.169 7 C 0.021 3.979 8 H 0.135 0.865 9 N -0.852 5.852 10 S 2.799 3.201 11 O -0.949 6.949 12 O -0.937 6.937 13 C -0.768 4.768 14 C -0.219 4.219 15 C -0.180 4.180 16 O -0.325 6.325 17 Si 0.567 3.433 18 S 0.422 5.578 19 C -0.347 4.347 20 C -0.106 4.106 21 C -0.173 4.173 22 H 0.231 0.769 23 H 0.233 0.767 24 H 0.125 0.875 25 H 0.099 0.901 26 H 0.265 0.735 27 H 0.170 0.830 28 H 0.229 0.771 29 H -0.163 1.163 30 H -0.151 1.151 31 H 0.193 0.807 32 H 0.176 0.824 33 H 0.106 0.894 34 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.143 -1.839 -5.417 5.833 hybrid contribution -2.511 0.015 0.044 2.512 sum -1.368 -1.824 -5.373 5.837 Atomic orbital electron populations 1.43900 1.07294 1.12717 1.77814 1.20375 0.82608 0.91014 0.74751 1.90767 1.68239 1.33498 1.49252 1.22595 0.97082 0.95802 1.00753 0.86234 1.23382 0.93509 0.99817 1.00173 1.22232 0.87947 0.99712 0.88046 0.86520 1.55602 1.52556 1.25956 1.51098 1.01495 0.73121 0.72654 0.72802 1.93591 1.60018 1.58330 1.82919 1.93599 1.65558 1.79551 1.55027 1.29971 1.16087 1.05638 1.25121 1.25031 0.97875 1.00511 0.98451 1.25000 0.95278 0.85922 1.11801 1.86674 1.40245 1.67859 1.37734 0.95052 0.84260 0.86960 0.77043 1.84286 1.32168 1.10219 1.31115 1.25932 1.00128 1.03899 1.04695 1.19773 1.00831 0.94633 0.95367 1.23429 0.97188 1.01455 0.95194 0.76869 0.76703 0.87474 0.90093 0.73518 0.83010 0.77087 1.16331 1.15077 0.80715 0.82427 0.89363 0.88597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 2.50 8.87 31.22 0.28 2.78 16 2 C 0.53 0.02 7.63 -10.99 -0.08 -0.06 16 3 O -0.54 -2.54 16.74 5.56 0.09 -2.45 16 4 C -0.14 0.39 4.15 -90.96 -0.38 0.01 16 5 H 0.12 -0.60 8.14 -51.93 -0.42 -1.02 16 6 C -0.13 0.34 6.65 -25.92 -0.17 0.16 16 7 C 0.13 -0.33 4.35 -67.10 -0.29 -0.62 16 8 H 0.12 -0.44 8.05 -51.93 -0.42 -0.85 16 9 N -1.09 1.20 3.77 -4.18 -0.02 1.19 16 10 S 2.71 5.24 4.88 -107.50 -0.52 4.71 16 11 O -0.96 -4.20 17.10 -57.17 -0.98 -5.18 16 12 O -0.95 -4.77 16.64 -61.03 -1.02 -5.78 16 13 C -0.67 -0.37 5.77 -41.21 -0.24 -0.61 16 14 C -0.10 0.04 5.75 -36.00 -0.21 -0.17 16 15 C -0.07 0.05 2.07 36.01 0.07 0.13 16 16 O -0.52 0.48 8.61 -39.85 -0.34 0.13 16 17 Si 0.67 -1.23 31.06 -169.99 -5.28 -6.51 16 18 S 0.16 -0.26 20.70 -107.50 -2.23 -2.49 16 19 C -0.21 0.30 11.23 29.04 0.33 0.62 16 20 C -0.08 0.01 9.69 -41.21 -0.40 -0.39 16 21 C -0.13 0.34 7.43 -25.90 -0.19 0.15 16 22 H 0.40 -2.33 8.83 -40.82 -0.36 -2.69 16 23 H 0.40 -1.23 8.93 -40.82 -0.36 -1.60 16 24 H 0.11 -0.13 7.43 -51.93 -0.39 -0.52 16 25 H 0.08 -0.30 8.14 -51.93 -0.42 -0.72 16 26 H 0.43 -0.70 7.86 -34.48 -0.27 -0.97 16 27 H 0.15 -0.09 7.74 -51.92 -0.40 -0.49 16 28 H 0.38 -1.32 7.83 45.56 0.36 -0.97 16 29 H -0.24 0.12 7.11 56.52 0.40 0.52 16 30 H -0.23 -0.19 7.11 56.52 0.40 0.22 16 31 H 0.18 -0.64 8.06 -52.49 -0.42 -1.06 16 32 H 0.16 -0.13 7.74 -52.49 -0.41 -0.54 16 33 H 0.09 -0.30 8.14 -51.93 -0.42 -0.73 16 34 H 0.10 -0.16 8.09 -51.93 -0.42 -0.58 16 LS Contribution 312.28 15.07 4.71 4.71 Total: 0.00 -11.22 312.28 -10.43 -21.65 By element: Atomic # 1 Polarization: -8.43 SS G_CDS: -3.56 Total: -11.99 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: -1.56 Total: -0.77 kcal Atomic # 7 Polarization: 3.70 SS G_CDS: 0.26 Total: 3.96 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: -2.24 Total: -13.27 kcal Atomic # 14 Polarization: -1.23 SS G_CDS: -5.28 Total: -6.51 kcal Atomic # 16 Polarization: 4.97 SS G_CDS: -2.75 Total: 2.22 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -11.22 -10.43 -21.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_11684970_14772022.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.371 kcal (2) G-P(sol) polarization free energy of solvation -11.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds