Wall clock time and date at job start Sat Mar 6 2021 00:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.34782 * 1 3 3 O 1.21278 * 120.00574 * 2 1 4 4 C 1.50709 * 119.99548 * 180.02562 * 2 1 3 5 5 H 1.08991 * 112.84851 * 311.20087 * 4 2 1 6 6 C 1.53778 * 113.68607 * 82.46708 * 4 2 1 7 7 C 1.53781 * 87.07854 * 139.99212 * 6 4 2 8 8 H 1.08997 * 113.69098 * 89.12738 * 7 6 4 9 9 N 1.46510 * 113.61260 * 220.01628 * 7 6 4 10 10 S 1.65598 * 119.99992 * 242.49831 * 9 7 6 11 11 O 1.42106 * 106.39949 * 311.46003 * 10 9 7 12 12 O 1.42092 * 106.40468 * 178.54170 * 10 9 7 13 13 C 1.76203 * 107.22030 * 64.99673 * 10 9 7 14 14 C 1.33381 * 122.53996 * 269.97706 * 13 10 9 15 15 S 1.75886 * 109.59243 * 180.02562 * 14 13 10 16 16 C 1.75886 * 90.97082 * 359.83251 * 15 14 13 17 17 C 1.50697 * 125.20508 * 180.18379 * 16 15 14 18 18 O 1.42895 * 109.46952 * 245.13729 * 17 16 15 19 19 Si 1.86303 * 109.47171 * 5.13389 * 17 16 15 20 20 C 1.33387 * 109.59194 * 0.30047 * 16 15 14 21 21 C 1.53777 * 113.61141 * 179.97438 * 4 2 1 22 22 H 0.96996 * 120.00001 * 179.97438 * 1 2 3 23 23 H 0.96997 * 119.99492 * 359.97438 * 1 2 3 24 24 H 1.08998 * 113.62043 * 25.43756 * 6 4 2 25 25 H 1.09005 * 113.61189 * 254.53813 * 6 4 2 26 26 H 0.96996 * 119.99712 * 62.49129 * 9 7 6 27 27 H 1.07994 * 125.20771 * 0.05869 * 14 13 10 28 28 H 1.09000 * 109.47276 * 125.13302 * 17 16 15 29 29 H 0.96704 * 114.00429 * 59.99637 * 18 17 16 30 30 H 1.48493 * 109.99955 * 180.02562 * 19 17 16 31 31 H 1.48494 * 110.00082 * 301.32369 * 19 17 16 32 32 H 1.08002 * 122.54190 * 179.91011 * 20 16 15 33 33 H 1.08991 * 113.61417 * 105.38906 * 21 4 2 34 34 H 1.08999 * 113.69169 * 334.49624 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3478 0.0000 0.0000 3 8 1.9543 1.0502 0.0000 4 6 2.1013 -1.3052 -0.0006 5 1 1.7399 -2.0029 0.7548 6 6 2.2502 -1.9319 -1.3969 7 6 3.6826 -2.3128 -0.9869 8 1 3.7550 -3.2859 -0.5012 9 7 4.6661 -2.1373 -2.0586 10 16 5.4936 -3.4462 -2.6454 11 8 5.9869 -4.1495 -1.5134 12 8 6.3323 -2.9582 -3.6834 13 6 4.3150 -4.5063 -3.4149 14 6 3.6802 -5.4741 -2.7521 15 16 2.5886 -6.3179 -3.8429 16 6 3.0663 -5.2748 -5.1760 17 6 2.5294 -5.3602 -6.5815 18 8 3.5822 -5.7363 -7.4715 19 14 1.1721 -6.6345 -6.6514 20 6 3.9784 -4.3981 -4.7532 21 6 3.6295 -1.1343 -0.0011 22 1 -0.4850 -0.8400 -0.0004 23 1 -0.4849 0.8401 0.0004 24 1 2.2068 -1.2056 -2.2085 25 1 1.6000 -2.7912 -1.5615 26 1 4.8324 -1.2545 -2.4244 27 1 3.8153 -5.7041 -1.7056 28 1 2.1320 -4.3895 -6.8783 29 1 3.9834 -6.5920 -7.2668 30 1 0.6347 -6.7287 -8.0325 31 1 1.6933 -7.9558 -6.2184 32 1 4.4176 -3.6570 -5.4046 33 1 4.0932 -1.3493 0.9615 34 1 3.9644 -0.1902 -0.4308 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_40_11684970_15065232.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 00:23:42 Heat of formation + Delta-G solvation = -79.392388 kcal Electronic energy + Delta-G solvation = -22615.542874 eV Core-core repulsion = 18962.733407 eV Total energy + Delta-G solvation = -3652.809467 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 319.043 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.42786 -39.58618 -38.99593 -38.20152 -37.71750 -36.87132 -34.74895 -34.08720 -31.93211 -27.31407 -27.03603 -26.91927 -24.97776 -22.46528 -21.57171 -20.90603 -20.18386 -19.29441 -18.70303 -18.45610 -18.00574 -17.92019 -17.67389 -16.85996 -16.52737 -16.48042 -15.86204 -15.63265 -15.48485 -15.03965 -14.61955 -14.31807 -14.27025 -14.05139 -13.89076 -13.66251 -13.56815 -13.18207 -13.07162 -12.94177 -12.53374 -12.41206 -12.35165 -12.16007 -11.99527 -11.62719 -10.94811 -10.88826 -10.74345 -10.61349 -10.31595 -9.93402 -5.23899 -0.79520 -0.55649 0.23933 0.49848 0.91151 1.08470 1.38908 1.54948 1.76157 1.96674 2.48644 2.69561 3.11048 3.19528 3.23347 3.29241 3.47098 3.54701 3.60201 3.73501 3.86278 4.10150 4.15638 4.32551 4.42758 4.48624 4.56066 4.60646 4.68166 4.83108 4.87427 4.99632 5.23485 5.72159 5.79887 6.18367 6.26334 7.21416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.528 3.472 3 O -0.540 6.540 4 C -0.141 4.141 5 H 0.121 0.879 6 C -0.137 4.137 7 C 0.125 3.875 8 H 0.122 0.878 9 N -1.100 6.100 10 S 2.706 3.294 11 O -0.952 6.952 12 O -0.950 6.950 13 C -0.684 4.684 14 C -0.088 4.088 15 S 0.158 5.842 16 C -0.227 4.227 17 C -0.034 4.034 18 O -0.521 6.521 19 Si 0.651 3.349 20 C -0.041 4.041 21 C -0.120 4.120 22 H 0.402 0.598 23 H 0.402 0.598 24 H 0.096 0.904 25 H 0.085 0.915 26 H 0.423 0.577 27 H 0.185 0.815 28 H 0.130 0.870 29 H 0.379 0.621 30 H -0.233 1.233 31 H -0.239 1.239 32 H 0.157 0.843 33 H 0.085 0.915 34 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.389 -2.785 2.336 9.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C 0.312 3.688 3 O -0.416 6.416 4 C -0.163 4.163 5 H 0.139 0.861 6 C -0.177 4.177 7 C 0.017 3.983 8 H 0.140 0.860 9 N -0.859 5.859 10 S 2.793 3.207 11 O -0.942 6.942 12 O -0.940 6.940 13 C -0.783 4.783 14 C -0.227 4.227 15 S 0.422 5.578 16 C -0.344 4.344 17 C -0.146 4.146 18 O -0.328 6.328 19 Si 0.549 3.451 20 C -0.069 4.069 21 C -0.160 4.160 22 H 0.231 0.769 23 H 0.233 0.767 24 H 0.115 0.885 25 H 0.103 0.897 26 H 0.259 0.741 27 H 0.203 0.797 28 H 0.147 0.853 29 H 0.227 0.773 30 H -0.156 1.156 31 H -0.164 1.164 32 H 0.174 0.826 33 H 0.104 0.896 34 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -8.400 -3.974 1.955 9.496 hybrid contribution 0.818 0.779 -0.662 1.309 sum -7.582 -3.195 1.292 8.329 Atomic orbital electron populations 1.43903 1.07279 1.12688 1.77902 1.20373 0.82583 0.91017 0.74815 1.90776 1.68218 1.33496 1.49072 1.22611 0.97415 0.95854 1.00441 0.86128 1.23486 0.97137 1.01454 0.95625 1.22321 0.87127 1.00763 0.88067 0.86027 1.55511 1.57260 1.24307 1.48826 1.01706 0.72785 0.72822 0.73389 1.93617 1.76608 1.73455 1.50520 1.93623 1.63156 1.79536 1.57728 1.30057 1.24506 1.18055 1.05699 1.25910 0.96558 0.96113 1.04098 1.84440 1.39710 1.33381 1.00248 1.25009 1.06119 1.02846 1.00455 1.24422 0.96627 1.09432 0.84159 1.86654 1.50786 1.41729 1.53597 0.95362 0.82975 0.78948 0.87800 1.19618 0.95553 0.99222 0.92554 1.23250 0.92880 0.99354 1.00469 0.76926 0.76692 0.88529 0.89667 0.74084 0.79745 0.85279 0.77326 1.15596 1.16352 0.82557 0.89595 0.87627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 3.24 8.87 31.22 0.28 3.52 16 2 C 0.53 -0.34 7.63 -10.98 -0.08 -0.42 16 3 O -0.54 -2.34 16.74 5.56 0.09 -2.24 16 4 C -0.14 0.50 4.15 -90.96 -0.38 0.13 16 5 H 0.12 -0.72 8.14 -51.93 -0.42 -1.14 16 6 C -0.14 0.62 7.43 -25.92 -0.19 0.42 16 7 C 0.13 -0.42 4.42 -67.14 -0.30 -0.72 16 8 H 0.12 -0.58 7.77 -51.93 -0.40 -0.98 16 9 N -1.10 2.39 5.79 -4.21 -0.02 2.37 16 10 S 2.71 1.63 5.77 -107.50 -0.62 1.01 16 11 O -0.95 -2.97 17.16 -57.17 -0.98 -3.96 16 12 O -0.95 -3.94 17.63 -57.17 -1.01 -4.95 16 13 C -0.68 0.41 5.86 -41.21 -0.24 0.17 16 14 C -0.09 0.18 10.70 29.04 0.31 0.49 16 15 S 0.16 -0.37 20.60 -107.50 -2.21 -2.58 16 16 C -0.23 0.23 5.70 -36.00 -0.21 0.03 16 17 C -0.03 0.05 2.96 36.00 0.11 0.15 16 18 O -0.52 -0.26 12.88 -35.23 -0.45 -0.71 16 19 Si 0.65 -1.36 30.98 -169.99 -5.27 -6.62 16 20 C -0.04 0.00 9.59 -41.21 -0.40 -0.39 16 21 C -0.12 0.26 7.18 -25.94 -0.19 0.08 16 22 H 0.40 -2.75 8.83 -40.82 -0.36 -3.11 16 23 H 0.40 -1.54 8.93 -40.82 -0.36 -1.90 16 24 H 0.10 -0.35 8.10 -51.93 -0.42 -0.77 16 25 H 0.08 -0.54 8.14 -51.93 -0.42 -0.96 16 26 H 0.42 -1.34 8.94 -34.47 -0.31 -1.65 16 27 H 0.19 -0.79 8.00 -52.49 -0.42 -1.21 16 28 H 0.13 -0.31 7.96 -51.93 -0.41 -0.73 16 29 H 0.38 -0.86 8.70 45.56 0.40 -0.46 16 30 H -0.23 -0.20 7.11 56.52 0.40 0.20 16 31 H -0.24 0.08 7.11 56.52 0.40 0.48 16 32 H 0.16 0.01 7.97 -52.49 -0.42 -0.41 16 33 H 0.09 -0.22 8.14 -51.93 -0.42 -0.64 16 34 H 0.11 -0.06 7.44 -51.93 -0.39 -0.45 16 LS Contribution 323.32 15.07 4.87 4.87 Total: 0.00 -12.62 323.32 -10.45 -23.07 By element: Atomic # 1 Polarization: -10.15 SS G_CDS: -3.56 Total: -13.72 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: -1.56 Total: -0.06 kcal Atomic # 7 Polarization: 5.64 SS G_CDS: 0.25 Total: 5.89 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: -2.35 Total: -11.86 kcal Atomic # 14 Polarization: -1.36 SS G_CDS: -5.27 Total: -6.62 kcal Atomic # 16 Polarization: 1.27 SS G_CDS: -2.83 Total: -1.57 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -12.62 -10.45 -23.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_11684970_15065232.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.323 kcal (2) G-P(sol) polarization free energy of solvation -12.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds