Wall clock time and date at job start Sat Mar 6 2021 00:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.34782 * 1 3 3 O 1.21278 * 120.00574 * 2 1 4 4 C 1.50709 * 119.99548 * 180.02562 * 2 1 3 5 5 H 1.08991 * 112.84851 * 311.20087 * 4 2 1 6 6 C 1.53778 * 113.68607 * 82.46708 * 4 2 1 7 7 C 1.53781 * 87.07854 * 139.99212 * 6 4 2 8 8 H 1.08997 * 113.69098 * 89.12738 * 7 6 4 9 9 N 1.46510 * 113.61260 * 220.01628 * 7 6 4 10 10 S 1.65598 * 119.99992 * 242.49831 * 9 7 6 11 11 O 1.42106 * 106.39949 * 311.46003 * 10 9 7 12 12 O 1.42092 * 106.40468 * 178.54170 * 10 9 7 13 13 C 1.76203 * 107.22030 * 64.99673 * 10 9 7 14 14 C 1.33381 * 122.53996 * 269.97706 * 13 10 9 15 15 S 1.75886 * 109.59243 * 180.02562 * 14 13 10 16 16 C 1.75886 * 90.97082 * 359.83251 * 15 14 13 17 17 C 1.50697 * 125.20508 * 180.18379 * 16 15 14 18 18 O 1.42895 * 109.46952 * 245.13729 * 17 16 15 19 19 Si 1.86303 * 109.47171 * 5.13389 * 17 16 15 20 20 C 1.33387 * 109.59194 * 0.30047 * 16 15 14 21 21 C 1.53777 * 113.61141 * 179.97438 * 4 2 1 22 22 H 0.96996 * 120.00001 * 179.97438 * 1 2 3 23 23 H 0.96997 * 119.99492 * 359.97438 * 1 2 3 24 24 H 1.08998 * 113.62043 * 25.43756 * 6 4 2 25 25 H 1.09005 * 113.61189 * 254.53813 * 6 4 2 26 26 H 0.96996 * 119.99712 * 62.49129 * 9 7 6 27 27 H 1.07994 * 125.20771 * 0.05869 * 14 13 10 28 28 H 1.09000 * 109.47276 * 125.13302 * 17 16 15 29 29 H 0.96704 * 114.00429 * 59.99637 * 18 17 16 30 30 H 1.48493 * 109.99955 * 180.02562 * 19 17 16 31 31 H 1.48494 * 110.00082 * 301.32369 * 19 17 16 32 32 H 1.08002 * 122.54190 * 179.91011 * 20 16 15 33 33 H 1.08991 * 113.61417 * 105.38906 * 21 4 2 34 34 H 1.08999 * 113.69169 * 334.49624 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3478 0.0000 0.0000 3 8 1.9543 1.0502 0.0000 4 6 2.1013 -1.3052 -0.0006 5 1 1.7399 -2.0029 0.7548 6 6 2.2502 -1.9319 -1.3969 7 6 3.6826 -2.3128 -0.9869 8 1 3.7550 -3.2859 -0.5012 9 7 4.6661 -2.1373 -2.0586 10 16 5.4936 -3.4462 -2.6454 11 8 5.9869 -4.1495 -1.5134 12 8 6.3323 -2.9582 -3.6834 13 6 4.3150 -4.5063 -3.4149 14 6 3.6802 -5.4741 -2.7521 15 16 2.5886 -6.3179 -3.8429 16 6 3.0663 -5.2748 -5.1760 17 6 2.5294 -5.3602 -6.5815 18 8 3.5822 -5.7363 -7.4715 19 14 1.1721 -6.6345 -6.6514 20 6 3.9784 -4.3981 -4.7532 21 6 3.6295 -1.1343 -0.0011 22 1 -0.4850 -0.8400 -0.0004 23 1 -0.4849 0.8401 0.0004 24 1 2.2068 -1.2056 -2.2085 25 1 1.6000 -2.7912 -1.5615 26 1 4.8324 -1.2545 -2.4244 27 1 3.8153 -5.7041 -1.7056 28 1 2.1320 -4.3895 -6.8783 29 1 3.9834 -6.5920 -7.2668 30 1 0.6347 -6.7287 -8.0325 31 1 1.6933 -7.9558 -6.2184 32 1 4.4176 -3.6570 -5.4046 33 1 4.0932 -1.3493 0.9615 34 1 3.9644 -0.1902 -0.4308 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_11684970_15065232.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 00:23:42 Heat of formation + Delta-G solvation = -89.753847 kcal Electronic energy + Delta-G solvation = -22615.992180 eV Core-core repulsion = 18962.733407 eV Total energy + Delta-G solvation = -3653.258773 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 319.043 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.26094 -39.49425 -38.89789 -38.33606 -37.66184 -37.02995 -34.65074 -33.91897 -31.83172 -27.19771 -26.83425 -26.63753 -24.89240 -22.29281 -21.50570 -20.71908 -20.10362 -19.17324 -18.63660 -18.34554 -17.90277 -17.77905 -17.63571 -16.76570 -16.40122 -16.31732 -15.84229 -15.57008 -15.38809 -14.95531 -14.51765 -14.23122 -14.15733 -13.89968 -13.83649 -13.55682 -13.40215 -13.34050 -13.23749 -12.92217 -12.51441 -12.34220 -12.17060 -11.95009 -11.76536 -11.52640 -10.87232 -10.80714 -10.60805 -10.42726 -10.18748 -9.78191 -5.09221 -0.77821 -0.44357 0.38626 0.62262 0.98284 1.20882 1.51057 1.65424 1.87563 2.05039 2.67950 2.72517 3.20956 3.32724 3.45951 3.51447 3.64077 3.76097 3.90887 3.96780 4.12035 4.26551 4.44580 4.47814 4.65882 4.77344 4.77727 4.84814 4.94161 5.03337 5.06412 5.08924 5.49266 5.93548 5.97174 6.35558 6.54357 7.41088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.520 3.480 3 O -0.600 6.600 4 C -0.132 4.132 5 H 0.154 0.846 6 C -0.128 4.128 7 C 0.121 3.879 8 H 0.142 0.858 9 N -1.094 6.094 10 S 2.722 3.278 11 O -0.980 6.980 12 O -0.994 6.994 13 C -0.690 4.690 14 C -0.082 4.082 15 S 0.198 5.802 16 C -0.233 4.233 17 C -0.046 4.046 18 O -0.544 6.544 19 Si 0.730 3.270 20 C -0.056 4.056 21 C -0.133 4.133 22 H 0.420 0.580 23 H 0.403 0.597 24 H 0.085 0.915 25 H 0.115 0.885 26 H 0.426 0.574 27 H 0.210 0.790 28 H 0.137 0.863 29 H 0.388 0.612 30 H -0.277 1.277 31 H -0.259 1.259 32 H 0.145 0.855 33 H 0.087 0.913 34 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.165 -4.410 3.251 11.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C 0.306 3.694 3 O -0.481 6.481 4 C -0.154 4.154 5 H 0.172 0.828 6 C -0.167 4.167 7 C 0.014 3.986 8 H 0.160 0.840 9 N -0.854 5.854 10 S 2.812 3.188 11 O -0.970 6.970 12 O -0.984 6.984 13 C -0.792 4.792 14 C -0.222 4.222 15 S 0.461 5.539 16 C -0.351 4.351 17 C -0.157 4.157 18 O -0.352 6.352 19 Si 0.632 3.368 20 C -0.085 4.085 21 C -0.173 4.173 22 H 0.251 0.749 23 H 0.233 0.767 24 H 0.104 0.896 25 H 0.134 0.866 26 H 0.263 0.737 27 H 0.227 0.773 28 H 0.155 0.845 29 H 0.237 0.763 30 H -0.203 1.203 31 H -0.184 1.184 32 H 0.163 0.837 33 H 0.105 0.895 34 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -10.190 -5.605 2.895 11.985 hybrid contribution 1.291 1.259 -0.967 2.046 sum -8.899 -4.346 1.928 10.090 Atomic orbital electron populations 1.43825 1.06487 1.13758 1.76052 1.20930 0.83363 0.91263 0.73829 1.90752 1.69527 1.35704 1.52113 1.22692 0.95795 0.94895 1.02011 0.82839 1.23457 0.96627 1.02044 0.94609 1.22587 0.87407 1.01184 0.87415 0.84010 1.55308 1.57371 1.23670 1.49091 1.00846 0.72783 0.72804 0.72363 1.93575 1.77793 1.74227 1.51362 1.93561 1.65395 1.80432 1.59061 1.29700 1.25061 1.18830 1.05571 1.26282 0.95571 0.94995 1.05314 1.84327 1.38669 1.32010 0.98858 1.25069 1.05982 1.03006 1.01045 1.24706 0.96523 1.10508 0.83955 1.86622 1.51559 1.42644 1.54404 0.94509 0.80687 0.76812 0.84833 1.19623 0.96280 0.99700 0.92861 1.23279 0.94390 0.98837 1.00755 0.74873 0.76653 0.89643 0.86628 0.73688 0.77307 0.84514 0.76262 1.20262 1.18403 0.83694 0.89466 0.90012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 7.04 8.87 -173.52 -1.54 5.50 16 2 C 0.52 -0.62 7.63 87.66 0.67 0.05 16 3 O -0.60 -6.27 16.74 -3.02 -0.05 -6.32 16 4 C -0.13 1.09 4.15 -11.01 -0.05 1.05 16 5 H 0.15 -2.28 8.14 -2.39 -0.02 -2.30 16 6 C -0.13 1.34 7.43 31.12 0.23 1.57 16 7 C 0.12 -0.90 4.42 45.50 0.20 -0.70 16 8 H 0.14 -1.63 7.77 -2.39 -0.02 -1.65 16 9 N -1.09 4.06 5.79 -167.24 -0.97 3.09 16 10 S 2.72 5.39 5.77 -56.49 -0.33 5.07 16 11 O -0.98 -6.38 17.16 -128.00 -2.20 -8.58 16 12 O -0.99 -10.23 17.63 -128.00 -2.26 -12.49 16 13 C -0.69 1.10 5.86 21.22 0.12 1.22 16 14 C -0.08 0.50 10.70 66.72 0.71 1.21 16 15 S 0.20 -1.31 20.60 -56.49 -1.16 -2.48 16 16 C -0.23 0.63 5.70 24.59 0.14 0.77 16 17 C -0.05 0.13 2.96 71.24 0.21 0.34 16 18 O -0.54 -0.79 12.88 -148.98 -1.92 -2.71 16 19 Si 0.73 -3.48 30.98 68.60 2.13 -1.36 16 20 C -0.06 0.00 9.59 21.22 0.20 0.20 16 21 C -0.13 0.53 7.18 31.10 0.22 0.75 16 22 H 0.42 -6.56 8.83 -92.71 -0.82 -7.38 16 23 H 0.40 -3.18 8.93 -92.71 -0.83 -4.01 16 24 H 0.08 -0.65 8.10 -2.39 -0.02 -0.67 16 25 H 0.12 -1.87 8.14 -2.38 -0.02 -1.88 16 26 H 0.43 -2.01 8.94 -96.75 -0.87 -2.88 16 27 H 0.21 -2.39 8.00 -2.91 -0.02 -2.42 16 28 H 0.14 -0.68 7.96 -2.39 -0.02 -0.70 16 29 H 0.39 -1.60 8.70 -74.05 -0.64 -2.25 16 30 H -0.28 -0.67 7.11 99.48 0.71 0.04 16 31 H -0.26 0.43 7.11 99.48 0.71 1.14 16 32 H 0.15 0.26 7.97 -2.91 -0.02 0.23 16 33 H 0.09 -0.41 8.14 -2.39 -0.02 -0.43 16 34 H 0.08 0.09 7.44 -2.39 -0.02 0.07 16 Total: 0.00 -31.33 323.32 -7.54 -38.88 By element: Atomic # 1 Polarization: -23.15 SS G_CDS: -1.92 Total: -25.07 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: 2.67 Total: 6.47 kcal Atomic # 7 Polarization: 11.10 SS G_CDS: -2.51 Total: 8.59 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -6.42 Total: -30.09 kcal Atomic # 14 Polarization: -3.48 SS G_CDS: 2.13 Total: -1.36 kcal Atomic # 16 Polarization: 4.08 SS G_CDS: -1.49 Total: 2.59 kcal Total: -31.33 -7.54 -38.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_11684970_15065232.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.875 kcal (2) G-P(sol) polarization free energy of solvation -31.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds