Wall clock time and date at job start Sat Mar 6 2021 00:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.33396 * 125.20559 * 2 1 4 4 C 1.50697 * 122.53661 * 359.97438 * 3 2 1 5 5 O 1.42900 * 109.47174 * 68.98290 * 4 3 2 6 6 Si 1.86303 * 109.46934 * 308.98362 * 4 3 2 7 7 C 1.38424 * 114.92009 * 179.97438 * 3 2 1 8 8 S 1.76203 * 122.53463 * 179.97438 * 7 3 2 9 9 O 1.42101 * 106.40194 * 26.04059 * 8 7 3 10 10 O 1.42103 * 106.39747 * 158.95636 * 8 7 3 11 11 N 1.65595 * 107.22069 * 272.49966 * 8 7 3 12 12 C 1.46498 * 120.00402 * 64.99795 * 11 8 7 13 13 H 1.09000 * 112.84744 * 15.33514 * 12 11 8 14 14 C 1.53773 * 113.61642 * 146.53203 * 12 11 8 15 15 C 1.53783 * 87.08334 * 139.98444 * 14 12 11 16 16 H 1.09003 * 113.61023 * 89.11787 * 15 14 12 17 17 C 1.50698 * 113.61510 * 219.93517 * 15 14 12 18 18 N 1.34777 * 119.99780 * 179.97438 * 17 15 14 19 19 O 1.21284 * 119.99793 * 0.02562 * 17 15 14 20 20 C 1.53780 * 113.61677 * 244.14079 * 12 11 8 21 21 C 1.33386 * 114.92232 * 0.24466 * 7 3 2 22 22 C 1.50700 * 125.19964 * 179.75810 * 21 7 3 23 23 S 1.75882 * 109.59482 * 359.63784 * 21 7 3 24 24 H 1.08993 * 109.47000 * 93.41315 * 1 2 3 25 25 H 1.09002 * 109.47084 * 213.41484 * 1 2 3 26 26 H 1.09004 * 109.47167 * 333.41384 * 1 2 3 27 27 H 1.08998 * 109.47341 * 188.98432 * 4 3 2 28 28 H 0.96696 * 113.99859 * 65.18470 * 5 4 3 29 29 H 1.48501 * 110.00298 * 308.58250 * 6 4 3 30 30 H 1.48496 * 109.99991 * 69.90498 * 6 4 3 31 31 H 0.97003 * 119.99851 * 245.00785 * 11 8 7 32 32 H 1.09007 * 113.61729 * 254.53662 * 14 12 11 33 33 H 1.08996 * 113.61858 * 25.43090 * 14 12 11 34 34 H 0.96989 * 120.00060 * 0.02562 * 18 17 15 35 35 H 0.97000 * 119.99543 * 179.97438 * 18 17 15 36 36 H 1.09002 * 113.61441 * 334.56968 * 20 12 11 37 37 H 1.08998 * 113.61296 * 105.46923 * 20 12 11 38 38 H 1.08995 * 109.47263 * 84.40837 * 22 21 7 39 39 H 1.09003 * 109.46656 * 204.40810 * 22 21 7 40 40 H 1.08998 * 109.47162 * 324.40206 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0900 0.0000 4 6 1.7052 2.4846 -0.0006 5 8 1.0771 2.7428 1.2568 6 14 0.4478 2.6404 -1.3664 7 6 3.6380 0.8428 0.0006 8 16 4.8356 2.1352 0.0000 9 8 4.2098 3.2625 0.5975 10 8 6.0414 1.5650 0.4903 11 7 5.1187 2.5406 -1.5804 12 6 4.0482 3.1297 -2.3886 13 1 3.2153 3.4938 -1.7872 14 6 4.5492 4.1471 -3.4272 15 6 3.5188 3.5456 -4.3975 16 1 2.5402 4.0230 -4.3462 17 6 4.0284 3.4057 -5.8088 18 7 3.2304 2.8919 -6.7656 19 8 5.1570 3.7548 -6.0833 20 6 3.6146 2.2493 -3.5726 21 6 3.9751 -0.4478 -0.0041 22 6 5.3860 -0.9770 -0.0098 23 16 2.5209 -1.4372 0.0008 24 1 -0.3633 -0.0612 -1.0258 25 1 -0.3633 -0.8578 0.5659 26 1 -0.3634 0.9190 0.4599 27 1 2.5070 3.2054 -0.1609 28 1 1.6882 2.7572 2.0060 29 1 1.0320 2.1754 -2.6501 30 1 -0.7598 1.8408 -1.0387 31 1 5.9934 2.3879 -1.9711 32 1 4.3429 5.1831 -3.1583 33 1 5.5829 3.9860 -3.7330 34 1 2.3279 2.6124 -6.5459 35 1 3.5583 2.8022 -7.6741 36 1 4.3923 1.5682 -3.9181 37 1 2.6548 1.7554 -3.4208 38 1 5.7644 -1.0139 1.0117 39 1 5.3962 -1.9797 -0.4375 40 1 6.0179 -0.3206 -0.6080 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_40_11684970_15065288.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 00:23:47 Heat of formation + Delta-G solvation = -72.686642 kcal Electronic energy + Delta-G solvation = -28181.040737 eV Core-core repulsion = 24217.446815 eV Total energy + Delta-G solvation = -3963.593922 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 347.074 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -41.46609 -40.34481 -39.03332 -38.50635 -37.01767 -36.93847 -34.75842 -34.41719 -34.14224 -31.01133 -28.11203 -27.06633 -26.97288 -26.03602 -23.29937 -22.51469 -21.19640 -20.58765 -20.06054 -19.13730 -18.81456 -18.44024 -18.15871 -17.98758 -17.19321 -16.83294 -16.66937 -16.25396 -15.92572 -15.56377 -15.41455 -15.23173 -14.84593 -14.64862 -14.50641 -14.33297 -14.16198 -14.03460 -13.77629 -13.65648 -13.48896 -13.36002 -13.20582 -13.05115 -12.79235 -12.66147 -12.37675 -12.23682 -12.02119 -11.76517 -11.56199 -11.29139 -10.95037 -10.77980 -10.74703 -10.66364 -10.09195 -9.63150 -4.93816 -0.84127 -0.51213 0.28436 0.61077 0.78597 1.26396 1.48724 1.54008 1.88766 1.90263 2.47553 2.58365 3.12667 3.17812 3.24078 3.37649 3.43891 3.54689 3.62467 3.81129 3.82810 3.91588 4.07831 4.12394 4.15082 4.33363 4.37598 4.40147 4.46552 4.52257 4.55137 4.60665 4.67128 4.80230 4.85276 4.89367 4.97593 5.13281 5.21105 5.71780 5.73269 6.25587 6.59912 7.20737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.171 4.171 3 C -0.075 4.075 4 C -0.095 4.095 5 O -0.528 6.528 6 Si 0.709 3.291 7 C -0.686 4.686 8 S 2.702 3.298 9 O -0.946 6.946 10 O -0.950 6.950 11 N -1.101 6.101 12 C 0.119 3.881 13 H 0.118 0.882 14 C -0.116 4.116 15 C -0.142 4.142 16 H 0.123 0.877 17 C 0.529 3.471 18 N -0.855 5.855 19 O -0.539 6.539 20 C -0.146 4.146 21 C -0.047 4.047 22 C -0.110 4.110 23 S 0.157 5.843 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.100 0.900 27 H 0.102 0.898 28 H 0.371 0.629 29 H -0.236 1.236 30 H -0.229 1.229 31 H 0.423 0.577 32 H 0.090 0.910 33 H 0.107 0.893 34 H 0.402 0.598 35 H 0.403 0.597 36 H 0.097 0.903 37 H 0.087 0.913 38 H 0.102 0.898 39 H 0.081 0.919 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.428 -1.737 -3.507 5.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.289 4.289 3 C -0.085 4.085 4 C -0.206 4.206 5 O -0.333 6.333 6 Si 0.606 3.394 7 C -0.785 4.785 8 S 2.790 3.210 9 O -0.936 6.936 10 O -0.940 6.940 11 N -0.859 5.859 12 C 0.011 3.989 13 H 0.136 0.864 14 C -0.156 4.156 15 C -0.164 4.164 16 H 0.141 0.859 17 C 0.314 3.686 18 N -0.418 5.418 19 O -0.415 6.415 20 C -0.186 4.186 21 C -0.168 4.168 22 C -0.169 4.169 23 S 0.423 5.577 24 H 0.094 0.906 25 H 0.095 0.905 26 H 0.118 0.882 27 H 0.120 0.880 28 H 0.219 0.781 29 H -0.161 1.161 30 H -0.153 1.153 31 H 0.259 0.741 32 H 0.108 0.892 33 H 0.125 0.875 34 H 0.231 0.769 35 H 0.233 0.767 36 H 0.115 0.885 37 H 0.106 0.894 38 H 0.121 0.879 39 H 0.100 0.900 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.763 -3.062 -3.615 6.718 hybrid contribution 0.928 -0.441 0.210 1.049 sum -3.836 -3.504 -3.405 6.211 Atomic orbital electron populations 1.20838 0.87191 1.04921 1.02883 1.24460 1.00311 0.95076 1.09071 1.18623 0.90090 0.97198 1.02612 1.25765 1.07336 0.91373 0.96092 1.86627 1.37376 1.93730 1.15577 0.94398 0.79795 0.90698 0.74535 1.29544 1.11853 1.13432 1.23699 1.01727 0.73138 0.73577 0.72540 1.93539 1.76919 1.48794 1.74311 1.93618 1.43754 1.78958 1.77668 1.55496 1.21059 1.77385 1.32000 1.22437 0.90080 0.95046 0.91291 0.86427 1.23242 1.00408 0.99531 0.92396 1.22652 1.02186 1.00136 0.91383 0.85879 1.20323 0.85237 0.76056 0.87022 1.43898 1.18225 1.66809 1.12826 1.90774 1.19248 1.48905 1.82565 1.23690 1.03651 0.96101 0.95130 1.24597 1.00717 0.95015 0.96474 1.20900 0.88071 1.02239 1.05650 1.84450 0.95263 1.08615 1.69351 0.90554 0.90460 0.88176 0.88034 0.78090 1.16134 1.15297 0.74053 0.89169 0.87470 0.76941 0.76655 0.88479 0.89438 0.87934 0.90017 0.88619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.01 8.05 36.00 0.29 0.28 16 2 C -0.17 -0.19 6.10 -36.00 -0.22 -0.41 16 3 C -0.07 -0.10 4.58 -106.25 -0.49 -0.58 16 4 C -0.09 -0.07 1.97 36.00 0.07 0.00 16 5 O -0.53 -0.81 11.85 -35.23 -0.42 -1.23 16 6 Si 0.71 -1.11 28.64 -169.99 -4.87 -5.98 16 7 C -0.69 -0.83 5.86 -41.21 -0.24 -1.07 16 8 S 2.70 3.59 5.32 -107.50 -0.57 3.02 16 9 O -0.95 -3.02 14.39 -57.17 -0.82 -3.85 16 10 O -0.95 -3.17 15.07 -57.17 -0.86 -4.03 16 11 N -1.10 1.46 5.79 -4.20 -0.02 1.43 16 12 C 0.12 -0.22 4.42 -67.12 -0.30 -0.52 16 13 H 0.12 -0.29 4.12 -51.93 -0.21 -0.50 16 14 C -0.12 0.21 7.19 -25.92 -0.19 0.02 16 15 C -0.14 0.37 4.14 -90.87 -0.38 -0.01 16 16 H 0.12 -0.63 8.14 -51.93 -0.42 -1.05 16 17 C 0.53 -0.08 7.64 -10.99 -0.08 -0.16 16 18 N -0.85 2.73 8.87 31.22 0.28 3.01 16 19 O -0.54 -2.39 16.74 5.55 0.09 -2.30 16 20 C -0.15 0.38 7.44 -25.83 -0.19 0.19 16 21 C -0.05 -0.03 6.50 -36.00 -0.23 -0.26 16 22 C -0.11 0.08 8.88 36.01 0.32 0.40 16 23 S 0.16 0.04 23.31 -107.50 -2.51 -2.46 16 24 H 0.08 -0.05 6.98 -51.93 -0.36 -0.41 16 25 H 0.08 -0.06 8.14 -51.93 -0.42 -0.48 16 26 H 0.10 0.08 5.13 -51.93 -0.27 -0.19 16 27 H 0.10 0.05 2.80 -51.93 -0.15 -0.10 16 28 H 0.37 0.06 9.11 45.56 0.42 0.47 16 29 H -0.24 0.57 5.02 56.52 0.28 0.86 16 30 H -0.23 0.05 4.94 56.52 0.28 0.33 16 31 H 0.42 -1.25 8.93 -34.47 -0.31 -1.56 16 32 H 0.09 -0.24 8.14 -51.93 -0.42 -0.66 16 33 H 0.11 -0.06 7.43 -51.93 -0.39 -0.45 16 34 H 0.40 -2.40 8.83 -40.82 -0.36 -2.76 16 35 H 0.40 -1.38 8.93 -40.82 -0.36 -1.75 16 36 H 0.10 -0.23 8.10 -51.93 -0.42 -0.65 16 37 H 0.09 -0.26 6.04 -51.93 -0.31 -0.58 16 38 H 0.10 -0.05 8.14 -51.93 -0.42 -0.48 16 39 H 0.08 -0.20 8.14 -51.93 -0.42 -0.63 16 40 H 0.10 -0.10 6.58 -51.93 -0.34 -0.44 16 LS Contribution 336.40 15.07 5.07 5.07 Total: 0.00 -9.59 336.40 -10.89 -20.48 By element: Atomic # 1 Polarization: -6.39 SS G_CDS: -4.62 Total: -11.01 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: -1.64 Total: -2.14 kcal Atomic # 7 Polarization: 4.19 SS G_CDS: 0.25 Total: 4.44 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: -2.01 Total: -11.41 kcal Atomic # 14 Polarization: -1.11 SS G_CDS: -4.87 Total: -5.98 kcal Atomic # 16 Polarization: 3.63 SS G_CDS: -3.08 Total: 0.55 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -9.59 -10.89 -20.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_11684970_15065288.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.210 kcal (2) G-P(sol) polarization free energy of solvation -9.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds