Wall clock time and date at job start Sat Mar 6 2021 00:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.33396 * 125.20559 * 2 1 4 4 C 1.50697 * 122.53661 * 359.97438 * 3 2 1 5 5 O 1.42900 * 109.47174 * 68.98290 * 4 3 2 6 6 Si 1.86303 * 109.46934 * 308.98362 * 4 3 2 7 7 C 1.38424 * 114.92009 * 179.97438 * 3 2 1 8 8 S 1.76203 * 122.53463 * 179.97438 * 7 3 2 9 9 O 1.42101 * 106.40194 * 26.04059 * 8 7 3 10 10 O 1.42103 * 106.39747 * 158.95636 * 8 7 3 11 11 N 1.65595 * 107.22069 * 272.49966 * 8 7 3 12 12 C 1.46498 * 120.00402 * 64.99795 * 11 8 7 13 13 H 1.09000 * 112.84744 * 15.33514 * 12 11 8 14 14 C 1.53773 * 113.61642 * 146.53203 * 12 11 8 15 15 C 1.53783 * 87.08334 * 139.98444 * 14 12 11 16 16 H 1.09003 * 113.61023 * 89.11787 * 15 14 12 17 17 C 1.50698 * 113.61510 * 219.93517 * 15 14 12 18 18 N 1.34777 * 119.99780 * 179.97438 * 17 15 14 19 19 O 1.21284 * 119.99793 * 0.02562 * 17 15 14 20 20 C 1.53780 * 113.61677 * 244.14079 * 12 11 8 21 21 C 1.33386 * 114.92232 * 0.24466 * 7 3 2 22 22 C 1.50700 * 125.19964 * 179.75810 * 21 7 3 23 23 S 1.75882 * 109.59482 * 359.63784 * 21 7 3 24 24 H 1.08993 * 109.47000 * 93.41315 * 1 2 3 25 25 H 1.09002 * 109.47084 * 213.41484 * 1 2 3 26 26 H 1.09004 * 109.47167 * 333.41384 * 1 2 3 27 27 H 1.08998 * 109.47341 * 188.98432 * 4 3 2 28 28 H 0.96696 * 113.99859 * 65.18470 * 5 4 3 29 29 H 1.48501 * 110.00298 * 308.58250 * 6 4 3 30 30 H 1.48496 * 109.99991 * 69.90498 * 6 4 3 31 31 H 0.97003 * 119.99851 * 245.00785 * 11 8 7 32 32 H 1.09007 * 113.61729 * 254.53662 * 14 12 11 33 33 H 1.08996 * 113.61858 * 25.43090 * 14 12 11 34 34 H 0.96989 * 120.00060 * 0.02562 * 18 17 15 35 35 H 0.97000 * 119.99543 * 179.97438 * 18 17 15 36 36 H 1.09002 * 113.61441 * 334.56968 * 20 12 11 37 37 H 1.08998 * 113.61296 * 105.46923 * 20 12 11 38 38 H 1.08995 * 109.47263 * 84.40837 * 22 21 7 39 39 H 1.09003 * 109.46656 * 204.40810 * 22 21 7 40 40 H 1.08998 * 109.47162 * 324.40206 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0900 0.0000 4 6 1.7052 2.4846 -0.0006 5 8 1.0771 2.7428 1.2568 6 14 0.4478 2.6404 -1.3664 7 6 3.6380 0.8428 0.0006 8 16 4.8356 2.1352 0.0000 9 8 4.2098 3.2625 0.5975 10 8 6.0414 1.5650 0.4903 11 7 5.1187 2.5406 -1.5804 12 6 4.0482 3.1297 -2.3886 13 1 3.2153 3.4938 -1.7872 14 6 4.5492 4.1471 -3.4272 15 6 3.5188 3.5456 -4.3975 16 1 2.5402 4.0230 -4.3462 17 6 4.0284 3.4057 -5.8088 18 7 3.2304 2.8919 -6.7656 19 8 5.1570 3.7548 -6.0833 20 6 3.6146 2.2493 -3.5726 21 6 3.9751 -0.4478 -0.0041 22 6 5.3860 -0.9770 -0.0098 23 16 2.5209 -1.4372 0.0008 24 1 -0.3633 -0.0612 -1.0258 25 1 -0.3633 -0.8578 0.5659 26 1 -0.3634 0.9190 0.4599 27 1 2.5070 3.2054 -0.1609 28 1 1.6882 2.7572 2.0060 29 1 1.0320 2.1754 -2.6501 30 1 -0.7598 1.8408 -1.0387 31 1 5.9934 2.3879 -1.9711 32 1 4.3429 5.1831 -3.1583 33 1 5.5829 3.9860 -3.7330 34 1 2.3279 2.6124 -6.5459 35 1 3.5583 2.8022 -7.6741 36 1 4.3923 1.5682 -3.9181 37 1 2.6548 1.7554 -3.4208 38 1 5.7644 -1.0139 1.0117 39 1 5.3962 -1.9797 -0.4375 40 1 6.0179 -0.3206 -0.6080 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_11684970_15065288.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 00:23:45 Heat of formation + Delta-G solvation = -78.887830 kcal Electronic energy + Delta-G solvation = -28181.309640 eV Core-core repulsion = 24217.446815 eV Total energy + Delta-G solvation = -3963.862825 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 347.074 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.36148 -40.36289 -39.00953 -38.62368 -37.17054 -37.01340 -34.69704 -34.41549 -34.04147 -30.99026 -28.09853 -26.93727 -26.79184 -26.04546 -23.31046 -22.41373 -21.15118 -20.53954 -20.07896 -19.15666 -18.78252 -18.38288 -18.19346 -17.85741 -17.20612 -16.79305 -16.60721 -16.22681 -15.95074 -15.55152 -15.42764 -15.21025 -14.84885 -14.60861 -14.47445 -14.30085 -14.07369 -13.98530 -13.69772 -13.64851 -13.50817 -13.41923 -13.30384 -13.09221 -12.78825 -12.64971 -12.26598 -12.11321 -11.90020 -11.76844 -11.46467 -11.27522 -10.93628 -10.78957 -10.64233 -10.55869 -10.10620 -9.64518 -4.77584 -0.90743 -0.55146 0.27346 0.58507 0.75429 1.36285 1.60006 1.63178 1.89718 2.03105 2.50646 2.66091 3.07173 3.35076 3.39311 3.40024 3.60600 3.62454 3.74346 3.80844 3.93032 3.98167 4.13461 4.19361 4.35537 4.38680 4.45184 4.49138 4.58208 4.66583 4.67990 4.74529 4.82208 4.87213 4.91686 5.01221 5.03938 5.13277 5.37586 5.87897 5.90410 6.48765 6.57489 7.36320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.184 4.184 3 C -0.082 4.082 4 C -0.117 4.117 5 O -0.539 6.539 6 Si 0.750 3.250 7 C -0.693 4.693 8 S 2.712 3.288 9 O -0.968 6.968 10 O -0.975 6.975 11 N -1.092 6.092 12 C 0.113 3.887 13 H 0.125 0.875 14 C -0.122 4.122 15 C -0.135 4.135 16 H 0.156 0.844 17 C 0.524 3.476 18 N -0.839 5.839 19 O -0.593 6.593 20 C -0.141 4.141 21 C -0.052 4.052 22 C -0.116 4.116 23 S 0.174 5.826 24 H 0.085 0.915 25 H 0.084 0.916 26 H 0.091 0.909 27 H 0.101 0.899 28 H 0.373 0.627 29 H -0.217 1.217 30 H -0.250 1.250 31 H 0.430 0.570 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.418 0.582 35 H 0.405 0.595 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.100 0.900 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.611 -2.190 -4.410 7.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.302 4.302 3 C -0.092 4.092 4 C -0.225 4.225 5 O -0.344 6.344 6 Si 0.645 3.355 7 C -0.793 4.793 8 S 2.802 3.198 9 O -0.958 6.958 10 O -0.965 6.965 11 N -0.854 5.854 12 C 0.005 3.995 13 H 0.143 0.857 14 C -0.162 4.162 15 C -0.156 4.156 16 H 0.173 0.827 17 C 0.310 3.690 18 N -0.402 5.402 19 O -0.474 6.474 20 C -0.180 4.180 21 C -0.174 4.174 22 C -0.175 4.175 23 S 0.440 5.560 24 H 0.104 0.896 25 H 0.103 0.897 26 H 0.110 0.890 27 H 0.119 0.881 28 H 0.221 0.779 29 H -0.142 1.142 30 H -0.175 1.175 31 H 0.268 0.732 32 H 0.117 0.883 33 H 0.109 0.891 34 H 0.249 0.751 35 H 0.235 0.765 36 H 0.111 0.889 37 H 0.116 0.884 38 H 0.117 0.883 39 H 0.119 0.881 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -5.957 -3.527 -4.517 8.266 hybrid contribution 1.277 -0.331 0.511 1.414 sum -4.680 -3.858 -4.006 7.269 Atomic orbital electron populations 1.20873 0.86670 1.04837 1.03528 1.24654 1.00880 0.95420 1.09292 1.18729 0.90099 0.97644 1.02744 1.26223 1.08638 0.91098 0.96557 1.86602 1.37911 1.93781 1.16154 0.93990 0.77639 0.89892 0.73940 1.29485 1.11819 1.13490 1.24525 1.01190 0.72539 0.73194 0.72909 1.93510 1.77225 1.49773 1.75306 1.93581 1.44916 1.79334 1.78661 1.55293 1.21743 1.77195 1.31120 1.22620 0.90063 0.95368 0.91402 0.85739 1.23252 0.99969 1.00162 0.92786 1.22746 1.03177 1.00171 0.89535 0.82662 1.20750 0.84655 0.75375 0.88231 1.43824 1.18653 1.65251 1.12485 1.90752 1.21582 1.51505 1.83527 1.23666 1.03995 0.95991 0.94381 1.24820 1.01484 0.95072 0.95990 1.21012 0.87399 1.03383 1.05666 1.84343 0.94664 1.08014 1.68974 0.89619 0.89750 0.89019 0.88146 0.77923 1.14165 1.17461 0.73209 0.88308 0.89080 0.75082 0.76452 0.88885 0.88364 0.88269 0.88092 0.88480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.00 8.05 71.23 0.57 0.58 16 2 C -0.18 -0.36 6.10 24.59 0.15 -0.21 16 3 C -0.08 -0.22 4.58 -20.92 -0.10 -0.31 16 4 C -0.12 -0.18 1.97 71.23 0.14 -0.04 16 5 O -0.54 -2.07 11.85 -148.98 -1.77 -3.84 16 6 Si 0.75 -3.19 28.64 68.60 1.96 -1.22 16 7 C -0.69 -1.90 5.86 21.22 0.12 -1.78 16 8 S 2.71 9.51 5.32 -56.49 -0.30 9.21 16 9 O -0.97 -7.22 14.39 -128.00 -1.84 -9.06 16 10 O -0.97 -7.66 15.07 -128.00 -1.93 -9.59 16 11 N -1.09 2.37 5.79 -167.21 -0.97 1.40 16 12 C 0.11 -0.47 4.42 45.52 0.20 -0.27 16 13 H 0.13 -0.69 4.12 -2.39 -0.01 -0.70 16 14 C -0.12 0.44 7.19 31.12 0.22 0.66 16 15 C -0.13 0.86 4.14 -10.96 -0.05 0.82 16 16 H 0.16 -2.02 8.14 -2.39 -0.02 -2.04 16 17 C 0.52 -0.35 7.64 87.66 0.67 0.32 16 18 N -0.84 6.25 8.87 -173.53 -1.54 4.71 16 19 O -0.59 -5.83 16.74 -3.04 -0.05 -5.88 16 20 C -0.14 0.89 7.44 31.18 0.23 1.13 16 21 C -0.05 -0.07 6.50 24.59 0.16 0.09 16 22 C -0.12 0.14 8.88 71.24 0.63 0.78 16 23 S 0.17 0.02 23.31 -56.49 -1.32 -1.29 16 24 H 0.09 -0.18 6.98 -2.39 -0.02 -0.20 16 25 H 0.08 -0.16 8.14 -2.39 -0.02 -0.18 16 26 H 0.09 0.16 5.13 -2.38 -0.01 0.15 16 27 H 0.10 0.13 2.80 -2.39 -0.01 0.12 16 28 H 0.37 0.66 9.11 -74.06 -0.67 -0.01 16 29 H -0.22 1.64 5.02 99.48 0.50 2.14 16 30 H -0.25 0.25 4.94 99.48 0.49 0.74 16 31 H 0.43 -2.17 8.93 -96.75 -0.86 -3.03 16 32 H 0.10 -0.55 8.14 -2.38 -0.02 -0.57 16 33 H 0.09 0.00 7.43 -2.39 -0.02 -0.01 16 34 H 0.42 -5.79 8.83 -92.72 -0.82 -6.61 16 35 H 0.40 -3.03 8.93 -92.71 -0.83 -3.85 16 36 H 0.09 -0.48 8.10 -2.39 -0.02 -0.50 16 37 H 0.10 -0.82 6.04 -2.39 -0.01 -0.83 16 38 H 0.10 -0.04 8.14 -2.39 -0.02 -0.06 16 39 H 0.10 -0.56 8.14 -2.39 -0.02 -0.58 16 40 H 0.10 -0.15 6.58 -2.39 -0.02 -0.17 16 Total: 0.00 -22.82 336.40 -7.19 -30.01 By element: Atomic # 1 Polarization: -13.80 SS G_CDS: -2.40 Total: -16.21 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: 2.97 Total: 1.76 kcal Atomic # 7 Polarization: 8.62 SS G_CDS: -2.51 Total: 6.11 kcal Atomic # 8 Polarization: -22.78 SS G_CDS: -5.59 Total: -28.37 kcal Atomic # 14 Polarization: -3.19 SS G_CDS: 1.96 Total: -1.22 kcal Atomic # 16 Polarization: 9.54 SS G_CDS: -1.62 Total: 7.92 kcal Total: -22.82 -7.19 -30.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_11684970_15065288.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.878 kcal (2) G-P(sol) polarization free energy of solvation -22.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds