Wall clock time and date at job start Fri Mar 5 2021 22:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42906 * 1 3 3 Si 1.86299 * 109.46984 * 2 1 4 4 C 1.50700 * 109.47078 * 240.00462 * 2 1 3 5 5 C 1.38242 * 119.99538 * 299.99642 * 4 2 1 6 6 C 1.38239 * 119.99721 * 180.02562 * 5 4 2 7 7 C 1.38236 * 119.99866 * 359.95723 * 6 5 4 8 8 S 1.76197 * 119.99950 * 180.02562 * 7 6 5 9 9 O 1.42110 * 106.40051 * 336.46154 * 8 7 6 10 10 O 1.42094 * 106.40641 * 203.54331 * 8 7 6 11 11 N 1.65603 * 107.21861 * 89.99790 * 8 7 6 12 12 C 1.46496 * 119.99533 * 65.00340 * 11 8 7 13 13 C 1.53005 * 109.46763 * 164.99651 * 12 11 8 14 14 H 1.09004 * 112.90739 * 43.74905 * 13 12 11 15 15 C 1.53785 * 113.61412 * 174.99572 * 13 12 11 16 16 C 1.53774 * 87.07876 * 139.98317 * 15 13 12 17 17 H 1.09002 * 113.61343 * 89.20327 * 16 15 13 18 18 C 1.50702 * 113.61783 * 220.01845 * 16 15 13 19 19 C 1.38234 * 120.00257 * 240.00702 * 18 16 15 20 20 C 1.38238 * 119.99675 * 180.25732 * 19 18 16 21 21 C 1.38228 * 120.00110 * 359.52133 * 20 19 18 22 22 C 1.38234 * 120.00090 * 0.43562 * 21 20 19 23 23 C 1.38235 * 119.99522 * 59.97714 * 18 16 15 24 24 C 1.53770 * 113.61856 * 272.49679 * 13 12 11 25 25 C 1.38239 * 120.00221 * 0.27653 * 7 6 5 26 26 C 1.38230 * 120.00198 * 119.97718 * 4 2 1 27 27 H 0.96699 * 113.99929 * 59.99563 * 1 2 3 28 28 H 1.08995 * 109.47044 * 120.00155 * 2 1 3 29 29 H 1.48497 * 110.00228 * 60.00225 * 3 2 1 30 30 H 1.48503 * 110.00064 * 181.32071 * 3 2 1 31 31 H 1.07993 * 120.00239 * 359.97438 * 5 4 2 32 32 H 1.07992 * 119.99997 * 179.97438 * 6 5 4 33 33 H 0.97001 * 119.99926 * 244.99815 * 11 8 7 34 34 H 1.09001 * 109.47264 * 45.00257 * 12 11 8 35 35 H 1.09001 * 109.47308 * 284.99735 * 12 11 8 36 36 H 1.09000 * 113.61136 * 25.43718 * 15 13 12 37 37 H 1.09001 * 113.69046 * 254.54422 * 15 13 12 38 38 H 1.08002 * 119.99744 * 359.97115 * 19 18 16 39 39 H 1.08004 * 119.99577 * 179.72816 * 20 19 18 40 40 H 1.07998 * 119.99896 * 180.21041 * 21 20 19 41 41 H 1.08001 * 120.00324 * 179.78918 * 22 21 20 42 42 H 1.07996 * 120.00471 * 0.02562 * 23 18 16 43 43 H 1.09001 * 113.61537 * 105.47052 * 24 13 12 44 44 H 1.09000 * 113.61528 * 334.56840 * 24 13 12 45 45 H 1.07999 * 120.00199 * 179.72553 * 25 7 6 46 46 H 1.07998 * 120.00102 * 0.02562 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7103 -1.2305 5 6 1.5974 -2.0338 -1.4493 6 6 2.0586 -2.6856 -2.5778 7 6 2.8530 -2.0136 -3.4879 8 16 3.4403 -2.8441 -4.9266 9 8 3.4298 -4.2320 -4.6211 10 8 4.6074 -2.1488 -5.3430 11 7 2.3119 -2.6190 -6.1175 12 6 2.0542 -1.2739 -6.6375 13 6 1.2736 -1.3753 -7.9496 14 1 0.4645 -2.1044 -7.9066 15 6 0.8449 -0.0122 -8.5182 16 6 1.2007 -0.5682 -9.9071 17 1 0.3713 -1.0754 -10.4000 18 6 1.8883 0.4324 -10.7999 19 6 1.3144 0.7927 -12.0048 20 6 1.9479 1.7065 -12.8262 21 6 3.1501 2.2675 -12.4381 22 6 3.7235 1.9079 -11.2328 23 6 3.0926 0.9904 -10.4136 24 6 2.1702 -1.5225 -9.1901 25 6 3.1909 -0.6915 -3.2667 26 6 2.7257 -0.0384 -2.1406 27 1 -0.3933 0.4418 -0.7650 28 1 1.7924 -0.5138 0.8899 29 1 1.5616 2.4679 1.2085 30 1 3.5346 1.7703 -0.0322 31 1 0.9769 -2.5588 -0.7382 32 1 1.7981 -3.7196 -2.7485 33 1 1.8216 -3.3778 -6.4708 34 1 3.0018 -0.7660 -6.8169 35 1 1.4710 -0.7088 -5.9105 36 1 1.4828 0.8130 -8.2017 37 1 -0.2166 0.2007 -8.3919 38 1 0.3735 0.3567 -12.3066 39 1 1.5016 1.9846 -13.7696 40 1 3.6433 2.9839 -13.0783 41 1 4.6646 2.3436 -10.9312 42 1 3.5409 0.7090 -9.4723 43 1 2.1784 -2.5301 -9.6058 44 1 3.1704 -1.1102 -9.0573 45 1 3.8152 -0.1678 -3.9755 46 1 2.9867 0.9956 -1.9697 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_40_12130088_13421422.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 22:42:33 Heat of formation + Delta-G solvation = -26.585588 kcal Electronic energy + Delta-G solvation = -29077.496420 eV Core-core repulsion = 25026.179025 eV Total energy + Delta-G solvation = -4051.317395 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 360.123 amu Computer time = 2.15 seconds Orbital eigenvalues (eV) -41.21127 -40.77211 -39.14849 -38.24326 -37.82014 -36.86198 -35.93525 -33.09336 -32.28239 -32.13972 -31.74962 -28.35423 -27.31654 -26.73353 -24.69319 -24.15895 -23.54869 -23.06942 -21.96392 -20.80612 -20.14366 -19.23075 -18.59567 -18.29171 -17.90260 -17.35984 -16.86769 -16.72530 -16.47712 -16.13424 -16.02707 -15.96269 -15.72601 -15.42060 -15.01855 -14.92228 -14.75667 -14.47139 -14.25538 -14.13090 -13.99051 -13.90338 -13.52978 -13.41019 -13.13100 -13.10734 -13.01758 -12.72596 -12.68701 -12.45229 -12.39667 -12.06432 -12.00280 -11.85031 -11.59002 -11.47719 -11.27086 -10.78722 -10.56250 -10.39445 -10.23105 -9.79713 -9.54136 -5.19764 -0.73097 -0.40560 0.10423 0.45309 0.52274 1.09282 1.48518 1.83018 1.87009 2.28394 2.71766 2.85388 3.20355 3.23523 3.37222 3.41055 3.47923 3.51221 3.68534 3.73053 3.88473 3.96516 3.99758 4.07214 4.11717 4.14980 4.23176 4.24728 4.27145 4.32645 4.38535 4.50295 4.54938 4.63063 4.64194 4.70610 4.72911 4.79405 4.83729 4.86829 4.90359 4.97303 5.08818 5.12396 5.15637 5.18812 5.37054 5.60105 5.60900 5.66165 5.75385 5.83538 6.12400 6.35378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.535 6.535 2 C -0.078 4.078 3 Si 0.691 3.309 4 C -0.063 4.063 5 C -0.114 4.114 6 C -0.016 4.016 7 C -0.675 4.675 8 S 2.695 3.305 9 O -0.956 6.956 10 O -0.953 6.953 11 N -1.114 6.114 12 C 0.124 3.876 13 C -0.118 4.118 14 H 0.101 0.899 15 C -0.121 4.121 16 C -0.074 4.074 17 H 0.098 0.902 18 C -0.072 4.072 19 C -0.117 4.117 20 C -0.118 4.118 21 C -0.125 4.125 22 C -0.118 4.118 23 C -0.118 4.118 24 C -0.130 4.130 25 C -0.016 4.016 26 C -0.139 4.139 27 H 0.381 0.619 28 H 0.120 0.880 29 H -0.251 1.251 30 H -0.255 1.255 31 H 0.137 0.863 32 H 0.143 0.857 33 H 0.420 0.580 34 H 0.083 0.917 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.074 0.926 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.121 0.879 41 H 0.122 0.878 42 H 0.123 0.877 43 H 0.072 0.928 44 H 0.090 0.910 45 H 0.145 0.855 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.283 3.766 -2.400 6.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.341 6.341 2 C -0.188 4.188 3 Si 0.592 3.408 4 C -0.064 4.064 5 C -0.133 4.133 6 C -0.036 4.036 7 C -0.761 4.761 8 S 2.784 3.216 9 O -0.946 6.946 10 O -0.942 6.942 11 N -0.875 5.875 12 C -0.002 4.002 13 C -0.137 4.137 14 H 0.119 0.881 15 C -0.159 4.159 16 C -0.093 4.093 17 H 0.117 0.883 18 C -0.072 4.072 19 C -0.135 4.135 20 C -0.136 4.136 21 C -0.143 4.143 22 C -0.136 4.136 23 C -0.136 4.136 24 C -0.168 4.168 25 C -0.035 4.035 26 C -0.157 4.157 27 H 0.228 0.772 28 H 0.138 0.862 29 H -0.176 1.176 30 H -0.180 1.180 31 H 0.155 0.845 32 H 0.161 0.839 33 H 0.256 0.744 34 H 0.101 0.899 35 H 0.087 0.913 36 H 0.107 0.893 37 H 0.093 0.907 38 H 0.138 0.862 39 H 0.139 0.861 40 H 0.139 0.861 41 H 0.140 0.860 42 H 0.140 0.860 43 H 0.091 0.909 44 H 0.109 0.891 45 H 0.163 0.837 46 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.826 3.754 -1.402 4.904 hybrid contribution -0.614 -0.532 0.429 0.919 sum -3.440 3.222 -0.973 4.812 Atomic orbital electron populations 1.86539 1.16566 1.81664 1.49291 1.25234 0.85643 1.10616 0.97349 0.94708 0.81180 0.77391 0.87489 1.20750 0.95001 0.94985 0.95662 1.21192 1.00101 0.94048 0.97946 1.21008 0.91106 0.99489 0.91967 1.31024 1.15364 1.07377 1.22367 1.01915 0.73340 0.73379 0.72993 1.93621 1.86242 1.30382 1.84347 1.93606 1.44345 1.75376 1.80923 1.55496 1.61531 1.15794 1.54675 1.21405 1.00737 0.82298 0.95730 1.22748 0.98917 0.99144 0.92929 0.88123 1.23045 1.02164 0.96282 0.94431 1.21492 0.98518 0.95417 0.93827 0.88327 1.19709 0.95067 0.97407 0.95004 1.21078 0.99967 0.98245 0.94240 1.21185 0.95673 0.97118 0.99671 1.21195 0.96070 1.00165 0.96856 1.21186 0.99942 0.97745 0.94693 1.21032 0.95228 0.97312 0.99983 1.23227 0.98304 1.00058 0.95178 1.20919 0.94042 0.91964 0.96582 1.21168 0.99427 1.00110 0.95043 0.77205 0.86247 1.17575 1.17982 0.84484 0.83889 0.74438 0.89896 0.91303 0.89315 0.90683 0.86172 0.86084 0.86129 0.86011 0.85951 0.90884 0.89127 0.83697 0.84575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.58 12.77 -35.23 -0.45 0.13 16 2 C -0.08 0.11 2.82 36.01 0.10 0.21 16 3 Si 0.69 -1.45 29.79 -169.99 -5.06 -6.51 16 4 C -0.06 0.05 5.39 -104.62 -0.56 -0.51 16 5 C -0.11 0.03 9.61 -39.58 -0.38 -0.35 16 6 C -0.02 0.00 9.52 -39.58 -0.38 -0.38 16 7 C -0.67 -0.02 5.95 -39.58 -0.24 -0.26 16 8 S 2.69 1.95 5.74 -107.50 -0.62 1.34 16 9 O -0.96 -3.66 17.28 -57.17 -0.99 -4.65 16 10 O -0.95 -3.29 16.75 -57.17 -0.96 -4.25 16 11 N -1.11 2.66 6.00 -10.61 -0.06 2.60 16 12 C 0.12 -0.40 6.06 -4.04 -0.02 -0.43 16 13 C -0.12 0.41 3.79 -89.81 -0.34 0.07 16 14 H 0.10 -0.43 8.12 -51.93 -0.42 -0.85 16 15 C -0.12 0.38 7.11 -25.92 -0.18 0.20 16 16 C -0.07 0.15 3.98 -90.96 -0.36 -0.22 16 17 H 0.10 -0.24 8.09 -51.93 -0.42 -0.66 16 18 C -0.07 0.01 5.29 -104.62 -0.55 -0.55 16 19 C -0.12 -0.03 9.71 -39.58 -0.38 -0.41 16 20 C -0.12 -0.05 10.05 -39.59 -0.40 -0.45 16 21 C -0.12 -0.06 10.05 -39.59 -0.40 -0.46 16 22 C -0.12 -0.04 10.05 -39.58 -0.40 -0.44 16 23 C -0.12 -0.01 8.61 -39.58 -0.34 -0.35 16 24 C -0.13 0.29 7.01 -25.93 -0.18 0.11 16 25 C -0.02 0.01 9.52 -39.58 -0.38 -0.37 16 26 C -0.14 0.19 8.67 -39.58 -0.34 -0.16 16 27 H 0.38 -1.92 8.70 45.56 0.40 -1.52 16 28 H 0.12 -0.11 7.96 -51.93 -0.41 -0.52 16 29 H -0.25 -0.32 7.11 56.52 0.40 0.09 16 30 H -0.26 -0.08 7.11 56.52 0.40 0.32 16 31 H 0.14 -0.15 8.06 -52.49 -0.42 -0.58 16 32 H 0.14 -0.16 7.62 -52.49 -0.40 -0.56 16 33 H 0.42 -1.63 8.64 -34.47 -0.30 -1.92 16 34 H 0.08 -0.25 7.45 -51.93 -0.39 -0.64 16 35 H 0.07 -0.32 8.14 -51.93 -0.42 -0.74 16 36 H 0.09 -0.28 7.68 -51.93 -0.40 -0.68 16 37 H 0.07 -0.26 8.14 -51.93 -0.42 -0.68 16 38 H 0.12 -0.15 8.05 -52.49 -0.42 -0.57 16 39 H 0.12 -0.14 8.06 -52.48 -0.42 -0.56 16 40 H 0.12 -0.12 8.06 -52.49 -0.42 -0.55 16 41 H 0.12 -0.14 8.06 -52.49 -0.42 -0.56 16 42 H 0.12 -0.17 6.66 -52.49 -0.35 -0.52 16 43 H 0.07 -0.15 8.14 -51.93 -0.42 -0.57 16 44 H 0.09 -0.16 6.06 -51.93 -0.31 -0.47 16 45 H 0.15 -0.34 7.61 -52.49 -0.40 -0.74 16 46 H 0.14 -0.47 4.88 -52.49 -0.26 -0.72 16 LS Contribution 389.91 15.07 5.88 5.88 Total: 0.00 -10.14 389.91 -14.25 -24.39 By element: Atomic # 1 Polarization: -7.95 SS G_CDS: -6.24 Total: -14.19 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: -5.74 Total: -4.74 kcal Atomic # 7 Polarization: 2.66 SS G_CDS: -0.06 Total: 2.60 kcal Atomic # 8 Polarization: -6.37 SS G_CDS: -2.40 Total: -8.77 kcal Atomic # 14 Polarization: -1.45 SS G_CDS: -5.06 Total: -6.51 kcal Atomic # 16 Polarization: 1.95 SS G_CDS: -0.62 Total: 1.34 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -10.14 -14.25 -24.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_12130088_13421422.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.197 kcal (2) G-P(sol) polarization free energy of solvation -10.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.15 seconds