Wall clock time and date at job start Fri Mar 5 2021 22:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42906 * 1 3 3 Si 1.86299 * 109.46984 * 2 1 4 4 C 1.50700 * 109.47078 * 240.00462 * 2 1 3 5 5 C 1.38242 * 119.99538 * 299.99642 * 4 2 1 6 6 C 1.38239 * 119.99721 * 180.02562 * 5 4 2 7 7 C 1.38236 * 119.99866 * 359.95723 * 6 5 4 8 8 S 1.76197 * 119.99950 * 180.02562 * 7 6 5 9 9 O 1.42110 * 106.40051 * 336.46154 * 8 7 6 10 10 O 1.42094 * 106.40641 * 203.54331 * 8 7 6 11 11 N 1.65603 * 107.21861 * 89.99790 * 8 7 6 12 12 C 1.46496 * 119.99533 * 65.00340 * 11 8 7 13 13 C 1.53005 * 109.46763 * 164.99651 * 12 11 8 14 14 H 1.09004 * 112.90739 * 43.74905 * 13 12 11 15 15 C 1.53785 * 113.61412 * 174.99572 * 13 12 11 16 16 C 1.53774 * 87.07876 * 139.98317 * 15 13 12 17 17 H 1.09002 * 113.61343 * 89.20327 * 16 15 13 18 18 C 1.50702 * 113.61783 * 220.01845 * 16 15 13 19 19 C 1.38234 * 120.00257 * 240.00702 * 18 16 15 20 20 C 1.38238 * 119.99675 * 180.25732 * 19 18 16 21 21 C 1.38228 * 120.00110 * 359.52133 * 20 19 18 22 22 C 1.38234 * 120.00090 * 0.43562 * 21 20 19 23 23 C 1.38235 * 119.99522 * 59.97714 * 18 16 15 24 24 C 1.53770 * 113.61856 * 272.49679 * 13 12 11 25 25 C 1.38239 * 120.00221 * 0.27653 * 7 6 5 26 26 C 1.38230 * 120.00198 * 119.97718 * 4 2 1 27 27 H 0.96699 * 113.99929 * 59.99563 * 1 2 3 28 28 H 1.08995 * 109.47044 * 120.00155 * 2 1 3 29 29 H 1.48497 * 110.00228 * 60.00225 * 3 2 1 30 30 H 1.48503 * 110.00064 * 181.32071 * 3 2 1 31 31 H 1.07993 * 120.00239 * 359.97438 * 5 4 2 32 32 H 1.07992 * 119.99997 * 179.97438 * 6 5 4 33 33 H 0.97001 * 119.99926 * 244.99815 * 11 8 7 34 34 H 1.09001 * 109.47264 * 45.00257 * 12 11 8 35 35 H 1.09001 * 109.47308 * 284.99735 * 12 11 8 36 36 H 1.09000 * 113.61136 * 25.43718 * 15 13 12 37 37 H 1.09001 * 113.69046 * 254.54422 * 15 13 12 38 38 H 1.08002 * 119.99744 * 359.97115 * 19 18 16 39 39 H 1.08004 * 119.99577 * 179.72816 * 20 19 18 40 40 H 1.07998 * 119.99896 * 180.21041 * 21 20 19 41 41 H 1.08001 * 120.00324 * 179.78918 * 22 21 20 42 42 H 1.07996 * 120.00471 * 0.02562 * 23 18 16 43 43 H 1.09001 * 113.61537 * 105.47052 * 24 13 12 44 44 H 1.09000 * 113.61528 * 334.56840 * 24 13 12 45 45 H 1.07999 * 120.00199 * 179.72553 * 25 7 6 46 46 H 1.07998 * 120.00102 * 0.02562 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7103 -1.2305 5 6 1.5974 -2.0338 -1.4493 6 6 2.0586 -2.6856 -2.5778 7 6 2.8530 -2.0136 -3.4879 8 16 3.4403 -2.8441 -4.9266 9 8 3.4298 -4.2320 -4.6211 10 8 4.6074 -2.1488 -5.3430 11 7 2.3119 -2.6190 -6.1175 12 6 2.0542 -1.2739 -6.6375 13 6 1.2736 -1.3753 -7.9496 14 1 0.4645 -2.1044 -7.9066 15 6 0.8449 -0.0122 -8.5182 16 6 1.2007 -0.5682 -9.9071 17 1 0.3713 -1.0754 -10.4000 18 6 1.8883 0.4324 -10.7999 19 6 1.3144 0.7927 -12.0048 20 6 1.9479 1.7065 -12.8262 21 6 3.1501 2.2675 -12.4381 22 6 3.7235 1.9079 -11.2328 23 6 3.0926 0.9904 -10.4136 24 6 2.1702 -1.5225 -9.1901 25 6 3.1909 -0.6915 -3.2667 26 6 2.7257 -0.0384 -2.1406 27 1 -0.3933 0.4418 -0.7650 28 1 1.7924 -0.5138 0.8899 29 1 1.5616 2.4679 1.2085 30 1 3.5346 1.7703 -0.0322 31 1 0.9769 -2.5588 -0.7382 32 1 1.7981 -3.7196 -2.7485 33 1 1.8216 -3.3778 -6.4708 34 1 3.0018 -0.7660 -6.8169 35 1 1.4710 -0.7088 -5.9105 36 1 1.4828 0.8130 -8.2017 37 1 -0.2166 0.2007 -8.3919 38 1 0.3735 0.3567 -12.3066 39 1 1.5016 1.9846 -13.7696 40 1 3.6433 2.9839 -13.0783 41 1 4.6646 2.3436 -10.9312 42 1 3.5409 0.7090 -9.4723 43 1 2.1784 -2.5301 -9.6058 44 1 3.1704 -1.1102 -9.0573 45 1 3.8152 -0.1678 -3.9755 46 1 2.9867 0.9956 -1.9697 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_12130088_13421422.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 22:42:31 Heat of formation + Delta-G solvation = -25.916047 kcal Electronic energy + Delta-G solvation = -29077.467387 eV Core-core repulsion = 25026.179025 eV Total energy + Delta-G solvation = -4051.288361 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 360.123 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.05736 -40.68576 -39.03444 -38.39748 -37.70711 -37.02784 -35.78452 -33.01801 -32.19750 -32.05872 -31.70203 -28.18570 -27.23489 -26.50867 -24.55983 -24.07262 -23.49288 -22.99970 -21.82459 -20.75342 -20.01541 -19.17227 -18.55177 -18.21828 -17.86403 -17.31512 -16.76150 -16.59674 -16.35913 -16.04767 -15.92579 -15.85960 -15.63307 -15.41383 -14.88222 -14.82632 -14.62544 -14.44978 -14.18173 -14.04642 -13.92907 -13.85004 -13.49213 -13.30780 -13.26132 -13.21733 -12.93933 -12.65919 -12.55874 -12.41558 -12.28904 -12.00557 -11.94859 -11.79901 -11.40801 -11.28355 -11.10134 -10.68549 -10.37566 -10.31051 -10.15461 -9.77851 -9.49167 -5.05484 -0.73231 -0.38222 0.18318 0.48634 0.54049 1.22380 1.59318 1.92095 1.93609 2.33908 2.70974 2.89191 3.21491 3.39964 3.49719 3.62395 3.69875 3.70155 3.79872 3.84332 4.04098 4.12952 4.15488 4.19013 4.21385 4.31618 4.32853 4.34656 4.36913 4.54738 4.58811 4.61519 4.68080 4.72020 4.82799 4.84345 4.93600 4.94424 4.97923 5.01324 5.03802 5.17946 5.20969 5.21575 5.24203 5.34641 5.57015 5.64280 5.68584 5.69456 5.83385 6.07547 6.17497 6.69393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.550 6.550 2 C -0.082 4.082 3 Si 0.780 3.220 4 C -0.065 4.065 5 C -0.123 4.123 6 C -0.027 4.027 7 C -0.677 4.677 8 S 2.710 3.290 9 O -0.992 6.992 10 O -0.983 6.983 11 N -1.103 6.103 12 C 0.117 3.883 13 C -0.107 4.107 14 H 0.112 0.888 15 C -0.116 4.116 16 C -0.076 4.076 17 H 0.103 0.897 18 C -0.078 4.078 19 C -0.132 4.132 20 C -0.131 4.131 21 C -0.140 4.140 22 C -0.131 4.131 23 C -0.128 4.128 24 C -0.136 4.136 25 C -0.022 4.022 26 C -0.140 4.140 27 H 0.398 0.602 28 H 0.113 0.887 29 H -0.298 1.298 30 H -0.284 1.284 31 H 0.142 0.858 32 H 0.148 0.852 33 H 0.428 0.572 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.131 0.869 39 H 0.132 0.868 40 H 0.131 0.869 41 H 0.132 0.868 42 H 0.133 0.867 43 H 0.070 0.930 44 H 0.084 0.916 45 H 0.160 0.840 46 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.155 4.351 -2.377 7.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.358 6.358 2 C -0.192 4.192 3 Si 0.686 3.314 4 C -0.065 4.065 5 C -0.142 4.142 6 C -0.046 4.046 7 C -0.765 4.765 8 S 2.802 3.198 9 O -0.982 6.982 10 O -0.973 6.973 11 N -0.867 5.867 12 C -0.008 4.008 13 C -0.126 4.126 14 H 0.130 0.870 15 C -0.154 4.154 16 C -0.095 4.095 17 H 0.122 0.878 18 C -0.078 4.078 19 C -0.150 4.150 20 C -0.149 4.149 21 C -0.158 4.158 22 C -0.149 4.149 23 C -0.145 4.145 24 C -0.173 4.173 25 C -0.041 4.041 26 C -0.158 4.158 27 H 0.248 0.752 28 H 0.131 0.869 29 H -0.226 1.226 30 H -0.211 1.211 31 H 0.159 0.841 32 H 0.165 0.835 33 H 0.266 0.734 34 H 0.099 0.901 35 H 0.106 0.894 36 H 0.107 0.893 37 H 0.101 0.899 38 H 0.149 0.851 39 H 0.150 0.850 40 H 0.149 0.851 41 H 0.150 0.850 42 H 0.151 0.849 43 H 0.088 0.912 44 H 0.102 0.898 45 H 0.177 0.823 46 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -3.711 4.311 -1.423 5.863 hybrid contribution -0.371 -0.679 0.447 0.894 sum -4.082 3.632 -0.976 5.550 Atomic orbital electron populations 1.86503 1.16568 1.82141 1.50603 1.25334 0.85785 1.11147 0.96900 0.93705 0.77907 0.74726 0.85060 1.20855 0.94946 0.94878 0.95854 1.21319 1.00371 0.94476 0.97996 1.21140 0.91389 0.99898 0.92205 1.30854 1.15846 1.07789 1.22047 1.01126 0.73219 0.72270 0.73226 1.93567 1.86928 1.32630 1.85064 1.93563 1.46450 1.75695 1.81607 1.55211 1.60949 1.16701 1.53796 1.21600 1.01123 0.81736 0.96368 1.22698 0.98682 0.99231 0.92027 0.86962 1.23020 1.02629 0.96363 0.93363 1.21549 0.98580 0.95201 0.94127 0.87848 1.19967 0.95092 0.97536 0.95180 1.21331 1.00609 0.98481 0.94538 1.21429 0.95883 0.97313 1.00307 1.21424 0.96422 1.00701 0.97288 1.21435 1.00544 0.98033 0.94877 1.21241 0.95478 0.97348 1.00478 1.23254 0.98231 0.99781 0.96072 1.21181 0.94053 0.91753 0.97144 1.21398 0.98821 1.01047 0.94522 0.75210 0.86942 1.22642 1.21109 0.84056 0.83453 0.73441 0.90115 0.89372 0.89256 0.89932 0.85071 0.85027 0.85148 0.84982 0.84932 0.91168 0.89789 0.82263 0.82550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 1.61 12.77 -148.98 -1.90 -0.29 16 2 C -0.08 0.27 2.82 71.24 0.20 0.47 16 3 Si 0.78 -3.70 29.79 68.60 2.04 -1.66 16 4 C -0.06 0.15 5.39 -19.87 -0.11 0.04 16 5 C -0.12 0.10 9.61 22.27 0.21 0.31 16 6 C -0.03 0.00 9.52 22.27 0.21 0.21 16 7 C -0.68 0.04 5.95 22.27 0.13 0.17 16 8 S 2.71 5.09 5.74 -56.49 -0.32 4.77 16 9 O -0.99 -8.58 17.28 -128.00 -2.21 -10.79 16 10 O -0.98 -7.35 16.75 -128.00 -2.14 -9.50 16 11 N -1.10 5.66 6.00 -187.49 -1.12 4.53 16 12 C 0.12 -0.88 6.06 86.38 0.52 -0.36 16 13 C -0.11 0.87 3.79 -10.27 -0.04 0.83 16 14 H 0.11 -1.14 8.12 -2.38 -0.02 -1.16 16 15 C -0.12 0.85 7.11 31.12 0.22 1.07 16 16 C -0.08 0.33 3.98 -11.02 -0.04 0.29 16 17 H 0.10 -0.56 8.09 -2.39 -0.02 -0.58 16 18 C -0.08 0.00 5.29 -19.87 -0.11 -0.10 16 19 C -0.13 -0.10 9.71 22.27 0.22 0.11 16 20 C -0.13 -0.18 10.05 22.27 0.22 0.05 16 21 C -0.14 -0.22 10.05 22.27 0.22 0.01 16 22 C -0.13 -0.16 10.05 22.27 0.22 0.06 16 23 C -0.13 -0.05 8.61 22.27 0.19 0.14 16 24 C -0.14 0.64 7.01 31.12 0.22 0.85 16 25 C -0.02 0.05 9.52 22.27 0.21 0.26 16 26 C -0.14 0.53 8.67 22.27 0.19 0.72 16 27 H 0.40 -4.51 8.70 -74.06 -0.64 -5.15 16 28 H 0.11 -0.22 7.96 -2.39 -0.02 -0.23 16 29 H -0.30 -0.96 7.11 99.48 0.71 -0.25 16 30 H -0.28 -0.04 7.11 99.48 0.71 0.67 16 31 H 0.14 -0.31 8.06 -2.91 -0.02 -0.34 16 32 H 0.15 -0.24 7.62 -2.91 -0.02 -0.26 16 33 H 0.43 -3.48 8.64 -96.74 -0.84 -4.32 16 34 H 0.08 -0.53 7.45 -2.39 -0.02 -0.55 16 35 H 0.09 -0.97 8.14 -2.39 -0.02 -0.99 16 36 H 0.09 -0.65 7.68 -2.39 -0.02 -0.66 16 37 H 0.08 -0.70 8.14 -2.39 -0.02 -0.72 16 38 H 0.13 -0.32 8.05 -2.91 -0.02 -0.34 16 39 H 0.13 -0.25 8.06 -2.91 -0.02 -0.27 16 40 H 0.13 -0.20 8.06 -2.91 -0.02 -0.22 16 41 H 0.13 -0.25 8.06 -2.91 -0.02 -0.27 16 42 H 0.13 -0.34 6.66 -2.91 -0.02 -0.36 16 43 H 0.07 -0.29 8.14 -2.39 -0.02 -0.31 16 44 H 0.08 -0.27 6.06 -2.39 -0.01 -0.29 16 45 H 0.16 -0.90 7.61 -2.91 -0.02 -0.92 16 46 H 0.16 -1.34 4.88 -2.91 -0.01 -1.35 16 Total: 0.00 -23.48 389.91 -3.18 -26.66 By element: Atomic # 1 Polarization: -18.45 SS G_CDS: -0.43 Total: -18.87 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: 2.91 Total: 5.15 kcal Atomic # 7 Polarization: 5.66 SS G_CDS: -1.12 Total: 4.53 kcal Atomic # 8 Polarization: -14.32 SS G_CDS: -6.26 Total: -20.57 kcal Atomic # 14 Polarization: -3.70 SS G_CDS: 2.04 Total: -1.66 kcal Atomic # 16 Polarization: 5.09 SS G_CDS: -0.32 Total: 4.77 kcal Total: -23.48 -3.18 -26.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_12130088_13421422.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.743 kcal (2) G-P(sol) polarization free energy of solvation -23.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds