Wall clock time and date at job start Fri Mar 5 2021 22:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86293 * 109.47041 * 2 1 4 4 C 1.50707 * 109.46442 * 119.99698 * 2 1 3 5 5 C 1.33390 * 122.53976 * 75.00418 * 4 2 1 6 6 S 1.76203 * 125.20094 * 359.97438 * 5 4 2 7 7 O 1.42104 * 106.39743 * 263.53683 * 6 5 4 8 8 O 1.42093 * 106.40385 * 36.46027 * 6 5 4 9 9 N 1.65608 * 107.21442 * 150.00266 * 6 5 4 10 10 C 1.46501 * 120.00061 * 64.99970 * 9 6 5 11 11 C 1.52996 * 109.46949 * 164.99900 * 10 9 6 12 12 H 1.08997 * 112.84803 * 314.66257 * 11 10 9 13 13 C 1.53777 * 113.61436 * 85.86320 * 11 10 9 14 14 C 1.53953 * 87.02008 * 139.94865 * 13 11 10 15 15 H 1.09003 * 113.53500 * 89.18970 * 14 13 11 16 16 C 1.50693 * 113.66892 * 220.06340 * 14 13 11 17 17 C 1.38244 * 119.99944 * 37.29099 * 16 14 13 18 18 C 1.38233 * 119.99930 * 179.74540 * 17 16 14 19 19 C 1.38235 * 120.00052 * 0.52060 * 18 17 16 20 20 C 1.38231 * 120.00204 * 359.75381 * 19 18 17 21 21 C 1.38237 * 120.00508 * 217.55991 * 16 14 13 22 22 C 1.53780 * 87.11257 * 334.63767 * 14 13 11 23 23 S 1.75884 * 109.59242 * 179.97438 * 5 4 2 24 24 C 1.75887 * 90.97232 * 359.97438 * 23 5 4 25 25 C 1.33398 * 109.58980 * 359.73115 * 24 23 5 26 26 H 0.96700 * 114.00311 * 300.00531 * 1 2 3 27 27 H 1.08999 * 109.47293 * 239.99660 * 2 1 3 28 28 H 1.48506 * 109.99973 * 299.99283 * 3 2 1 29 29 H 1.48493 * 110.00375 * 61.31384 * 3 2 1 30 30 H 0.96996 * 119.99338 * 244.99662 * 9 6 5 31 31 H 1.09003 * 109.46646 * 284.99974 * 10 9 6 32 32 H 1.09003 * 109.47240 * 44.99314 * 10 9 6 33 33 H 1.09002 * 113.61180 * 254.52969 * 13 11 10 34 34 H 1.09001 * 113.61890 * 25.43215 * 13 11 10 35 35 H 1.08004 * 119.99519 * 359.97438 * 17 16 14 36 36 H 1.07999 * 119.99687 * 180.29740 * 18 17 16 37 37 H 1.07999 * 120.00031 * 179.77096 * 19 18 17 38 38 H 1.07992 * 120.00568 * 179.97438 * 20 19 18 39 39 H 1.08004 * 119.99418 * 0.02562 * 21 16 14 40 40 H 1.09000 * 113.61399 * 270.80909 * 22 14 13 41 41 H 1.09000 * 113.69403 * 139.91980 * 22 14 13 42 42 H 1.07991 * 125.20732 * 180.02562 * 24 23 5 43 43 H 1.07999 * 122.53823 * 180.24541 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9312 -0.7104 1.2306 5 6 1.8960 -2.0378 1.3574 6 16 1.2751 -3.1576 0.1469 7 8 -0.0664 -3.4450 0.5169 8 8 1.6343 -2.6203 -1.1185 9 7 2.1188 -4.5733 0.3104 10 6 1.9919 -5.3641 1.5370 11 6 2.5515 -6.7680 1.2988 12 1 2.2165 -7.2030 0.3572 13 6 4.0697 -6.8717 1.5198 14 6 3.7988 -8.2330 2.1859 15 1 3.8062 -9.0690 1.4865 16 6 4.6399 -8.4853 3.4105 17 6 4.9300 -7.4469 4.2757 18 6 5.6972 -7.6794 5.4019 19 6 6.1832 -8.9481 5.6572 20 6 5.8978 -9.9853 4.7892 21 6 5.1260 -9.7539 3.6659 22 6 2.3886 -7.7088 2.5044 23 16 2.5640 -2.4992 2.9176 24 6 2.8631 -0.8137 3.3217 25 6 2.4708 -0.0353 2.3119 26 1 -0.3934 0.4418 0.7650 27 1 1.7924 -0.5139 -0.8899 28 1 1.5616 2.4678 -1.2086 29 1 1.5878 2.4586 1.2241 30 1 2.6969 -4.8787 -0.4061 31 1 2.5501 -4.8818 2.3396 32 1 0.9408 -5.4345 1.8169 33 1 4.6417 -6.9434 0.5946 34 1 4.4636 -6.1211 2.2050 35 1 4.5542 -6.4547 4.0737 36 1 5.9198 -6.8692 6.0803 37 1 6.7857 -9.1290 6.5351 38 1 6.2778 -10.9763 4.9884 39 1 4.9032 -10.5642 2.9874 40 1 2.3219 -7.1874 3.4592 41 1 1.6043 -8.4544 2.3736 42 1 3.3019 -0.4629 4.2439 43 1 2.5631 1.0404 2.3378 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_40_12130088_13652106.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 22:42:37 Heat of formation + Delta-G solvation = -13.973182 kcal Electronic energy + Delta-G solvation = -28239.630386 eV Core-core repulsion = 24278.012152 eV Total energy + Delta-G solvation = -3961.618233 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 366.079 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.24649 -40.12714 -39.18932 -38.12674 -37.21889 -36.79446 -36.00538 -32.18377 -31.79674 -31.51268 -28.41778 -28.00456 -26.77947 -24.73644 -24.38675 -23.59472 -22.14178 -21.54350 -20.32876 -19.93938 -19.68594 -18.60699 -18.22654 -17.81498 -17.38261 -16.70933 -16.59436 -16.43673 -16.15534 -15.93898 -15.82254 -15.63511 -15.32785 -15.01659 -14.86146 -14.32409 -14.23163 -14.10568 -14.05667 -13.64019 -13.60616 -13.49924 -13.21505 -13.11474 -12.98449 -12.72460 -12.64841 -12.55180 -12.41455 -12.23423 -12.09417 -11.62603 -11.53563 -11.50457 -11.21479 -10.75669 -10.68699 -10.46382 -9.84224 -9.74651 -9.58271 -5.03372 -0.77775 -0.61825 0.17855 0.41060 0.47806 0.52734 1.16555 1.18151 1.51618 1.91270 1.92600 2.64768 2.81086 3.28301 3.36971 3.41910 3.42207 3.45202 3.64421 3.84644 3.89397 3.91166 3.95950 4.03582 4.07198 4.10510 4.19048 4.25919 4.36298 4.45842 4.52145 4.59389 4.59754 4.63901 4.67051 4.75861 4.79723 4.84105 4.94620 4.99257 5.03624 5.08062 5.13908 5.33582 5.55530 5.61688 5.71046 5.80483 6.07915 6.31684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.519 6.519 2 C -0.110 4.110 3 Si 0.708 3.292 4 C 0.009 3.991 5 C -0.766 4.766 6 S 2.720 3.280 7 O -0.939 6.939 8 O -0.944 6.944 9 N -1.115 6.115 10 C 0.120 3.880 11 C -0.118 4.118 12 H 0.105 0.895 13 C -0.131 4.131 14 C -0.073 4.073 15 H 0.100 0.900 16 C -0.071 4.071 17 C -0.118 4.118 18 C -0.118 4.118 19 C -0.125 4.125 20 C -0.118 4.118 21 C -0.116 4.116 22 C -0.122 4.122 23 S 0.202 5.798 24 C -0.163 4.163 25 C -0.165 4.165 26 H 0.378 0.622 27 H 0.150 0.850 28 H -0.249 1.249 29 H -0.256 1.256 30 H 0.424 0.576 31 H 0.064 0.936 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.121 0.879 38 H 0.122 0.878 39 H 0.121 0.879 40 H 0.088 0.912 41 H 0.077 0.923 42 H 0.178 0.822 43 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.511 -0.935 4.067 6.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.325 6.325 2 C -0.221 4.221 3 Si 0.608 3.392 4 C -0.008 4.008 5 C -0.966 4.966 6 S 2.805 3.195 7 O -0.929 6.929 8 O -0.934 6.934 9 N -0.877 5.877 10 C -0.006 4.006 11 C -0.137 4.137 12 H 0.123 0.877 13 C -0.168 4.168 14 C -0.091 4.091 15 H 0.118 0.882 16 C -0.071 4.071 17 C -0.136 4.136 18 C -0.136 4.136 19 C -0.143 4.143 20 C -0.136 4.136 21 C -0.134 4.134 22 C -0.160 4.160 23 S 0.468 5.532 24 C -0.300 4.300 25 C -0.195 4.195 26 H 0.226 0.774 27 H 0.168 0.832 28 H -0.173 1.173 29 H -0.180 1.180 30 H 0.259 0.741 31 H 0.082 0.918 32 H 0.106 0.894 33 H 0.093 0.907 34 H 0.107 0.893 35 H 0.139 0.861 36 H 0.139 0.861 37 H 0.139 0.861 38 H 0.140 0.860 39 H 0.139 0.861 40 H 0.107 0.893 41 H 0.096 0.904 42 H 0.196 0.804 43 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 4.859 -1.548 3.887 6.412 hybrid contribution -0.439 1.212 0.393 1.347 sum 4.421 -0.336 4.279 6.162 Atomic orbital electron populations 1.86719 1.16557 1.80016 1.49239 1.25564 0.84765 1.13370 0.98434 0.94693 0.90996 0.72829 0.80700 1.19037 0.93874 0.91334 0.96572 1.35712 1.26515 1.14424 1.19972 1.01390 0.73499 0.71810 0.72843 1.93629 1.31958 1.83382 1.83913 1.93572 1.83909 1.77998 1.37907 1.55549 1.65697 1.39245 1.27238 1.21498 1.02333 0.91717 0.85033 1.22762 0.96734 0.93766 1.00475 0.87666 1.23263 0.95406 0.96837 1.01317 1.21509 0.94708 0.98137 0.94794 0.88193 1.19704 0.97852 0.93492 0.96048 1.20999 0.99109 0.98789 0.94715 1.21165 0.97950 0.97132 0.97372 1.21194 1.00214 0.93213 0.99654 1.21192 0.98378 0.99219 0.94776 1.21091 0.98103 0.96524 0.97726 1.23057 0.96553 0.98464 0.97973 1.84011 1.56210 1.06179 1.06795 1.26213 1.03450 0.97011 1.03349 1.20356 1.03584 1.02091 0.93437 0.77433 0.83246 1.17289 1.18049 0.74089 0.91817 0.89435 0.90694 0.89257 0.86108 0.86094 0.86121 0.86043 0.86106 0.89332 0.90444 0.80433 0.82655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.52 -1.62 12.88 -35.23 -0.45 -2.07 16 2 C -0.11 -0.19 2.20 36.01 0.08 -0.11 16 3 Si 0.71 -0.45 30.45 -169.99 -5.18 -5.63 16 4 C 0.01 0.01 5.14 -106.25 -0.55 -0.54 16 5 C -0.77 -1.11 6.48 29.04 0.19 -0.92 16 6 S 2.72 7.49 5.57 -107.50 -0.60 6.89 16 7 O -0.94 -5.72 17.49 -57.17 -1.00 -6.72 16 8 O -0.94 -4.55 15.53 -57.17 -0.89 -5.43 16 9 N -1.12 1.06 6.00 -10.61 -0.06 1.00 16 10 C 0.12 -0.22 5.57 -4.04 -0.02 -0.25 16 11 C -0.12 0.33 3.78 -89.81 -0.34 -0.01 16 12 H 0.11 -0.33 8.14 -51.93 -0.42 -0.75 16 13 C -0.13 0.37 7.02 -25.83 -0.18 0.19 16 14 C -0.07 0.15 3.98 -90.87 -0.36 -0.21 16 15 H 0.10 -0.24 8.10 -51.93 -0.42 -0.66 16 16 C -0.07 0.03 5.29 -104.62 -0.55 -0.52 16 17 C -0.12 0.07 8.63 -39.58 -0.34 -0.27 16 18 C -0.12 0.03 10.05 -39.58 -0.40 -0.37 16 19 C -0.12 -0.01 10.05 -39.59 -0.40 -0.41 16 20 C -0.12 -0.02 10.05 -39.58 -0.40 -0.41 16 21 C -0.12 0.00 9.71 -39.58 -0.38 -0.39 16 22 C -0.12 0.31 7.11 -25.92 -0.18 0.12 16 23 S 0.20 -0.24 20.66 -107.50 -2.22 -2.46 16 24 C -0.16 0.31 11.23 29.04 0.33 0.64 16 25 C -0.16 0.15 8.74 -41.21 -0.36 -0.21 16 26 H 0.38 -0.23 8.70 45.56 0.40 0.17 16 27 H 0.15 0.39 5.80 -51.93 -0.30 0.09 16 28 H -0.25 -0.61 7.11 56.52 0.40 -0.21 16 29 H -0.26 -0.02 6.81 56.52 0.39 0.36 16 30 H 0.42 -1.23 8.65 -34.47 -0.30 -1.53 16 31 H 0.06 -0.20 5.56 -51.93 -0.29 -0.49 16 32 H 0.09 -0.11 7.75 -51.93 -0.40 -0.51 16 33 H 0.07 -0.23 8.14 -51.93 -0.42 -0.65 16 34 H 0.09 -0.27 6.08 -51.93 -0.32 -0.59 16 35 H 0.12 -0.28 6.65 -52.48 -0.35 -0.63 16 36 H 0.12 -0.23 8.06 -52.49 -0.42 -0.65 16 37 H 0.12 -0.17 8.06 -52.49 -0.42 -0.59 16 38 H 0.12 -0.16 8.06 -52.49 -0.42 -0.59 16 39 H 0.12 -0.16 8.06 -52.48 -0.42 -0.59 16 40 H 0.09 -0.23 7.69 -51.93 -0.40 -0.63 16 41 H 0.08 -0.19 8.14 -51.93 -0.42 -0.62 16 42 H 0.18 -0.83 8.06 -52.49 -0.42 -1.26 16 43 H 0.16 -0.42 5.53 -52.49 -0.29 -0.71 16 LS Contribution 372.74 15.07 5.62 5.62 Total: 0.00 -9.59 372.74 -13.92 -23.51 By element: Atomic # 1 Polarization: -5.76 SS G_CDS: -5.27 Total: -11.03 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: -3.87 Total: -3.67 kcal Atomic # 7 Polarization: 1.06 SS G_CDS: -0.06 Total: 1.00 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: -2.34 Total: -14.23 kcal Atomic # 14 Polarization: -0.45 SS G_CDS: -5.18 Total: -5.63 kcal Atomic # 16 Polarization: 7.25 SS G_CDS: -2.82 Total: 4.43 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -9.59 -13.92 -23.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_12130088_13652106.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.540 kcal (2) G-P(sol) polarization free energy of solvation -9.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds