Wall clock time and date at job start Fri Mar 5 2021 22:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86293 * 109.47041 * 2 1 4 4 C 1.50707 * 109.46442 * 119.99698 * 2 1 3 5 5 C 1.33390 * 122.53976 * 75.00418 * 4 2 1 6 6 S 1.76203 * 125.20094 * 359.97438 * 5 4 2 7 7 O 1.42104 * 106.39743 * 263.53683 * 6 5 4 8 8 O 1.42093 * 106.40385 * 36.46027 * 6 5 4 9 9 N 1.65608 * 107.21442 * 150.00266 * 6 5 4 10 10 C 1.46501 * 120.00061 * 64.99970 * 9 6 5 11 11 C 1.52996 * 109.46949 * 164.99900 * 10 9 6 12 12 H 1.08997 * 112.84803 * 314.66257 * 11 10 9 13 13 C 1.53777 * 113.61436 * 85.86320 * 11 10 9 14 14 C 1.53953 * 87.02008 * 139.94865 * 13 11 10 15 15 H 1.09003 * 113.53500 * 89.18970 * 14 13 11 16 16 C 1.50693 * 113.66892 * 220.06340 * 14 13 11 17 17 C 1.38244 * 119.99944 * 37.29099 * 16 14 13 18 18 C 1.38233 * 119.99930 * 179.74540 * 17 16 14 19 19 C 1.38235 * 120.00052 * 0.52060 * 18 17 16 20 20 C 1.38231 * 120.00204 * 359.75381 * 19 18 17 21 21 C 1.38237 * 120.00508 * 217.55991 * 16 14 13 22 22 C 1.53780 * 87.11257 * 334.63767 * 14 13 11 23 23 S 1.75884 * 109.59242 * 179.97438 * 5 4 2 24 24 C 1.75887 * 90.97232 * 359.97438 * 23 5 4 25 25 C 1.33398 * 109.58980 * 359.73115 * 24 23 5 26 26 H 0.96700 * 114.00311 * 300.00531 * 1 2 3 27 27 H 1.08999 * 109.47293 * 239.99660 * 2 1 3 28 28 H 1.48506 * 109.99973 * 299.99283 * 3 2 1 29 29 H 1.48493 * 110.00375 * 61.31384 * 3 2 1 30 30 H 0.96996 * 119.99338 * 244.99662 * 9 6 5 31 31 H 1.09003 * 109.46646 * 284.99974 * 10 9 6 32 32 H 1.09003 * 109.47240 * 44.99314 * 10 9 6 33 33 H 1.09002 * 113.61180 * 254.52969 * 13 11 10 34 34 H 1.09001 * 113.61890 * 25.43215 * 13 11 10 35 35 H 1.08004 * 119.99519 * 359.97438 * 17 16 14 36 36 H 1.07999 * 119.99687 * 180.29740 * 18 17 16 37 37 H 1.07999 * 120.00031 * 179.77096 * 19 18 17 38 38 H 1.07992 * 120.00568 * 179.97438 * 20 19 18 39 39 H 1.08004 * 119.99418 * 0.02562 * 21 16 14 40 40 H 1.09000 * 113.61399 * 270.80909 * 22 14 13 41 41 H 1.09000 * 113.69403 * 139.91980 * 22 14 13 42 42 H 1.07991 * 125.20732 * 180.02562 * 24 23 5 43 43 H 1.07999 * 122.53823 * 180.24541 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9312 -0.7104 1.2306 5 6 1.8960 -2.0378 1.3574 6 16 1.2751 -3.1576 0.1469 7 8 -0.0664 -3.4450 0.5169 8 8 1.6343 -2.6203 -1.1185 9 7 2.1188 -4.5733 0.3104 10 6 1.9919 -5.3641 1.5370 11 6 2.5515 -6.7680 1.2988 12 1 2.2165 -7.2030 0.3572 13 6 4.0697 -6.8717 1.5198 14 6 3.7988 -8.2330 2.1859 15 1 3.8062 -9.0690 1.4865 16 6 4.6399 -8.4853 3.4105 17 6 4.9300 -7.4469 4.2757 18 6 5.6972 -7.6794 5.4019 19 6 6.1832 -8.9481 5.6572 20 6 5.8978 -9.9853 4.7892 21 6 5.1260 -9.7539 3.6659 22 6 2.3886 -7.7088 2.5044 23 16 2.5640 -2.4992 2.9176 24 6 2.8631 -0.8137 3.3217 25 6 2.4708 -0.0353 2.3119 26 1 -0.3934 0.4418 0.7650 27 1 1.7924 -0.5139 -0.8899 28 1 1.5616 2.4678 -1.2086 29 1 1.5878 2.4586 1.2241 30 1 2.6969 -4.8787 -0.4061 31 1 2.5501 -4.8818 2.3396 32 1 0.9408 -5.4345 1.8169 33 1 4.6417 -6.9434 0.5946 34 1 4.4636 -6.1211 2.2050 35 1 4.5542 -6.4547 4.0737 36 1 5.9198 -6.8692 6.0803 37 1 6.7857 -9.1290 6.5351 38 1 6.2778 -10.9763 4.9884 39 1 4.9032 -10.5642 2.9874 40 1 2.3219 -7.1874 3.4592 41 1 1.6043 -8.4544 2.3736 42 1 3.3019 -0.4629 4.2439 43 1 2.5631 1.0404 2.3378 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_12130088_13652106.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 22:42:36 Heat of formation + Delta-G solvation = -14.199315 kcal Electronic energy + Delta-G solvation = -28239.640192 eV Core-core repulsion = 24278.012152 eV Total energy + Delta-G solvation = -3961.628039 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 366.079 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.09751 -40.12200 -39.07698 -38.40785 -37.31946 -37.08210 -35.96058 -32.09070 -31.71105 -31.45946 -28.32668 -28.05252 -26.56641 -24.62667 -24.34360 -23.50555 -22.06876 -21.54470 -20.18638 -20.00572 -19.67452 -18.72188 -18.19327 -17.85639 -17.37812 -16.71141 -16.55238 -16.47471 -16.07897 -15.98654 -15.82315 -15.57679 -15.30812 -14.91076 -14.77554 -14.22731 -14.18820 -14.02452 -14.01223 -13.69790 -13.61451 -13.41136 -13.31237 -13.29722 -13.14810 -12.82228 -12.60605 -12.51590 -12.34154 -12.27326 -11.98240 -11.56149 -11.42777 -11.32190 -11.07745 -10.78828 -10.65549 -10.40680 -9.77911 -9.64925 -9.50175 -4.98818 -0.85923 -0.65460 0.22019 0.48022 0.54030 0.64274 1.17672 1.24822 1.53900 1.86471 1.91697 2.49299 2.88554 3.23150 3.40164 3.47209 3.54449 3.61034 3.69192 3.99356 4.04505 4.06653 4.10128 4.14630 4.19013 4.24463 4.31330 4.41522 4.46328 4.49109 4.64737 4.69386 4.70709 4.73576 4.87834 4.90287 4.96103 4.97282 5.08668 5.15248 5.17045 5.19569 5.28044 5.52247 5.63402 5.68325 5.81161 5.93747 6.17075 6.34229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.546 6.546 2 C -0.138 4.138 3 Si 0.802 3.198 4 C 0.004 3.996 5 C -0.795 4.795 6 S 2.727 3.273 7 O -0.983 6.983 8 O -0.975 6.975 9 N -1.103 6.103 10 C 0.114 3.886 11 C -0.111 4.111 12 H 0.109 0.891 13 C -0.127 4.127 14 C -0.074 4.074 15 H 0.102 0.898 16 C -0.078 4.078 17 C -0.126 4.126 18 C -0.129 4.129 19 C -0.140 4.140 20 C -0.132 4.132 21 C -0.133 4.133 22 C -0.122 4.122 23 S 0.228 5.772 24 C -0.150 4.150 25 C -0.177 4.177 26 H 0.390 0.610 27 H 0.132 0.868 28 H -0.298 1.298 29 H -0.254 1.254 30 H 0.433 0.567 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.138 0.862 36 H 0.135 0.865 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.129 0.871 40 H 0.091 0.909 41 H 0.076 0.924 42 H 0.212 0.788 43 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.770 -0.234 5.728 8.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.355 6.355 2 C -0.247 4.247 3 Si 0.702 3.298 4 C -0.014 4.014 5 C -0.998 4.998 6 S 2.815 3.185 7 O -0.973 6.973 8 O -0.965 6.965 9 N -0.868 5.868 10 C -0.012 4.012 11 C -0.131 4.131 12 H 0.127 0.873 13 C -0.165 4.165 14 C -0.092 4.092 15 H 0.120 0.880 16 C -0.078 4.078 17 C -0.143 4.143 18 C -0.147 4.147 19 C -0.158 4.158 20 C -0.150 4.150 21 C -0.150 4.150 22 C -0.160 4.160 23 S 0.494 5.506 24 C -0.287 4.287 25 C -0.206 4.206 26 H 0.240 0.760 27 H 0.149 0.851 28 H -0.225 1.225 29 H -0.179 1.179 30 H 0.271 0.729 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.113 0.887 35 H 0.155 0.845 36 H 0.153 0.847 37 H 0.148 0.852 38 H 0.148 0.852 39 H 0.147 0.853 40 H 0.109 0.891 41 H 0.095 0.905 42 H 0.229 0.771 43 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 6.112 -0.902 5.542 8.300 hybrid contribution -0.818 0.939 -0.091 1.249 sum 5.294 0.037 5.452 7.599 Atomic orbital electron populations 1.86669 1.17762 1.80781 1.50299 1.25984 0.84231 1.16001 0.98435 0.93646 0.89383 0.68946 0.77796 1.19160 0.93975 0.91360 0.96890 1.35433 1.28479 1.14476 1.21376 1.00679 0.73033 0.72320 0.72499 1.93572 1.34909 1.84265 1.84507 1.93523 1.84194 1.78844 1.39971 1.55240 1.65376 1.38117 1.28085 1.21681 1.02358 0.92260 0.84877 1.22716 0.96834 0.92943 1.00601 0.87326 1.23274 0.95224 0.96428 1.01532 1.21530 0.94659 0.98662 0.94365 0.87964 1.19925 0.97829 0.93420 0.96581 1.21251 0.98960 0.99567 0.94547 1.21440 0.97917 0.97479 0.97845 1.21434 1.00689 0.93540 1.00173 1.21415 0.98699 0.99845 0.95055 1.21321 0.98457 0.97210 0.98061 1.23072 0.96308 0.98456 0.98155 1.83851 1.55137 1.06894 1.04671 1.26687 1.01773 0.96218 1.04033 1.20498 1.03927 1.03192 0.92936 0.75989 0.85065 1.22536 1.17886 0.72919 0.90312 0.90196 0.90301 0.88692 0.84459 0.84669 0.85173 0.85222 0.85347 0.89057 0.90477 0.77113 0.80669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -4.47 12.88 -148.98 -1.92 -6.39 16 2 C -0.14 -0.66 2.20 71.24 0.16 -0.51 16 3 Si 0.80 -1.11 30.45 68.60 2.09 0.97 16 4 C 0.00 0.01 5.14 -20.92 -0.11 -0.10 16 5 C -0.79 -2.69 6.48 66.72 0.43 -2.25 16 6 S 2.73 19.92 5.57 -56.49 -0.31 19.61 16 7 O -0.98 -14.33 17.49 -128.00 -2.24 -16.57 16 8 O -0.98 -11.88 15.53 -128.00 -1.99 -13.87 16 9 N -1.10 1.27 6.00 -187.49 -1.12 0.15 16 10 C 0.11 -0.42 5.57 86.38 0.48 0.06 16 11 C -0.11 0.67 3.78 -10.27 -0.04 0.63 16 12 H 0.11 -0.71 8.14 -2.39 -0.02 -0.73 16 13 C -0.13 0.83 7.02 31.18 0.22 1.05 16 14 C -0.07 0.34 3.98 -10.96 -0.04 0.29 16 15 H 0.10 -0.52 8.10 -2.39 -0.02 -0.54 16 16 C -0.08 0.08 5.29 -19.87 -0.11 -0.02 16 17 C -0.13 0.23 8.63 22.27 0.19 0.42 16 18 C -0.13 0.12 10.05 22.27 0.22 0.34 16 19 C -0.14 -0.04 10.05 22.27 0.22 0.19 16 20 C -0.13 -0.09 10.05 22.27 0.22 0.13 16 21 C -0.13 -0.04 9.71 22.27 0.22 0.17 16 22 C -0.12 0.66 7.11 31.12 0.22 0.88 16 23 S 0.23 -0.84 20.66 -56.49 -1.17 -2.00 16 24 C -0.15 0.96 11.23 66.72 0.75 1.71 16 25 C -0.18 0.62 8.74 21.22 0.19 0.81 16 26 H 0.39 0.08 8.70 -74.06 -0.64 -0.56 16 27 H 0.13 1.03 5.80 -2.39 -0.01 1.01 16 28 H -0.30 -1.93 7.11 99.48 0.71 -1.22 16 29 H -0.25 0.44 6.81 99.48 0.68 1.12 16 30 H 0.43 -2.24 8.65 -96.75 -0.84 -3.08 16 31 H 0.08 -0.55 5.56 -2.39 -0.01 -0.56 16 32 H 0.08 -0.14 7.75 -2.39 -0.02 -0.16 16 33 H 0.08 -0.54 8.14 -2.39 -0.02 -0.56 16 34 H 0.09 -0.72 6.08 -2.39 -0.01 -0.73 16 35 H 0.14 -0.83 6.65 -2.91 -0.02 -0.84 16 36 H 0.14 -0.63 8.06 -2.91 -0.02 -0.65 16 37 H 0.13 -0.35 8.06 -2.91 -0.02 -0.38 16 38 H 0.13 -0.28 8.06 -2.91 -0.02 -0.30 16 39 H 0.13 -0.29 8.06 -2.91 -0.02 -0.32 16 40 H 0.09 -0.53 7.69 -2.39 -0.02 -0.55 16 41 H 0.08 -0.39 8.14 -2.39 -0.02 -0.41 16 42 H 0.21 -2.84 8.06 -2.92 -0.02 -2.86 16 43 H 0.18 -1.40 5.53 -2.91 -0.02 -1.42 16 Total: 0.00 -24.23 372.74 -3.84 -28.07 By element: Atomic # 1 Polarization: -13.36 SS G_CDS: -0.41 Total: -13.76 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: 3.23 Total: 3.80 kcal Atomic # 7 Polarization: 1.27 SS G_CDS: -1.12 Total: 0.15 kcal Atomic # 8 Polarization: -30.69 SS G_CDS: -6.15 Total: -36.83 kcal Atomic # 14 Polarization: -1.11 SS G_CDS: 2.09 Total: 0.97 kcal Atomic # 16 Polarization: 19.09 SS G_CDS: -1.48 Total: 17.60 kcal Total: -24.23 -3.84 -28.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_12130088_13652106.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.869 kcal (2) G-P(sol) polarization free energy of solvation -24.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds