Wall clock time and date at job start Fri Mar 5 2021 22:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42907 * 1 3 3 Si 1.86304 * 109.46825 * 2 1 4 4 C 1.50698 * 109.47094 * 239.99559 * 2 1 3 5 5 C 1.33383 * 125.20725 * 316.81752 * 4 2 1 6 6 S 1.76198 * 122.53644 * 0.02753 * 5 4 2 7 7 O 1.42102 * 106.40454 * 313.34974 * 6 5 4 8 8 O 1.42102 * 106.40176 * 180.42848 * 6 5 4 9 9 N 1.65603 * 107.21839 * 66.88738 * 6 5 4 10 10 C 1.46503 * 119.99845 * 63.80862 * 9 6 5 11 11 C 1.53005 * 109.46873 * 163.56782 * 10 9 6 12 12 H 1.08997 * 112.85214 * 43.80292 * 11 10 9 13 13 C 1.53780 * 113.60968 * 174.99520 * 11 10 9 14 14 C 1.53784 * 87.08154 * 139.98039 * 13 11 10 15 15 H 1.09003 * 113.61284 * 89.19697 * 14 13 11 16 16 C 1.50700 * 113.61885 * 220.02136 * 14 13 11 17 17 C 1.38235 * 119.99670 * 240.00200 * 16 14 13 18 18 C 1.38241 * 119.99697 * 179.72273 * 17 16 14 19 19 C 1.38234 * 119.99986 * 0.25416 * 18 17 16 20 20 C 1.38243 * 120.00140 * 359.97438 * 19 18 17 21 21 C 1.38233 * 120.00190 * 60.25241 * 16 14 13 22 22 C 1.53776 * 113.61365 * 272.48941 * 11 10 9 23 23 C 1.38422 * 114.92246 * 179.75379 * 5 4 2 24 24 C 1.33385 * 114.92307 * 0.25056 * 23 5 4 25 25 S 1.75887 * 109.59248 * 359.97438 * 24 23 5 26 26 H 0.96703 * 114.00121 * 300.00018 * 1 2 3 27 27 H 1.08999 * 109.47173 * 119.99509 * 2 1 3 28 28 H 1.48500 * 109.99471 * 299.99536 * 3 2 1 29 29 H 1.48493 * 110.00408 * 61.31724 * 3 2 1 30 30 H 0.96998 * 120.00221 * 243.80175 * 9 6 5 31 31 H 1.08990 * 109.47480 * 43.56413 * 10 9 6 32 32 H 1.09000 * 109.46981 * 283.56188 * 10 9 6 33 33 H 1.09007 * 113.61756 * 25.43515 * 13 11 10 34 34 H 1.09001 * 113.69039 * 254.53740 * 13 11 10 35 35 H 1.07998 * 120.00116 * 359.97438 * 17 16 14 36 36 H 1.07999 * 119.99818 * 180.27155 * 18 17 16 37 37 H 1.07998 * 119.99930 * 180.02562 * 19 18 17 38 38 H 1.08000 * 120.00024 * 180.02562 * 20 19 18 39 39 H 1.08007 * 119.99844 * 0.02738 * 21 16 14 40 40 H 1.09008 * 113.61041 * 105.47132 * 22 11 10 41 41 H 1.09007 * 113.61830 * 334.57333 * 22 11 10 42 42 H 1.08004 * 122.53887 * 180.22922 * 23 5 4 43 43 H 1.07994 * 125.20696 * 180.02562 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 1.4385 -1.8514 -1.7147 6 16 0.0945 -2.7009 -0.9554 7 8 0.3824 -2.7458 0.4354 8 8 -0.1392 -3.8634 -1.7386 9 7 -1.2476 -1.7456 -1.1245 10 6 -1.7723 -1.4493 -2.4598 11 6 -3.2017 -0.9169 -2.3395 12 1 -3.3155 -0.1872 -1.5378 13 6 -3.8033 -0.4594 -3.6788 14 6 -5.1225 -1.0990 -3.2147 15 1 -5.7635 -0.4194 -2.6531 16 6 -5.8587 -1.8268 -4.3099 17 6 -7.1358 -1.4336 -4.6637 18 6 -7.8089 -2.0975 -5.6722 19 6 -7.2069 -3.1580 -6.3233 20 6 -5.9315 -3.5542 -5.9662 21 6 -5.2589 -2.8908 -4.9571 22 6 -4.2714 -2.0215 -2.3262 23 6 2.0589 -2.3142 -2.8623 24 6 3.0591 -1.5519 -3.3070 25 16 3.2593 -0.1635 -2.2459 26 1 -0.3933 0.4417 0.7651 27 1 1.7924 -0.5137 0.8900 28 1 1.5615 2.4678 -1.2086 29 1 1.5879 2.4587 1.2241 30 1 -1.6863 -1.3823 -0.3394 31 1 -1.7727 -2.3589 -3.0602 32 1 -1.1440 -0.6982 -2.9386 33 1 -3.3616 -0.9500 -4.5462 34 1 -3.8577 0.6238 -3.7872 35 1 -7.6062 -0.6051 -4.1550 36 1 -8.8050 -1.7875 -5.9517 37 1 -7.7326 -3.6764 -7.1115 38 1 -5.4610 -4.3825 -6.4752 39 1 -4.2628 -3.2009 -4.6776 40 1 -4.7032 -2.1993 -1.3412 41 1 -3.9577 -2.9392 -2.8238 42 1 1.7563 -3.2239 -3.3597 43 1 3.6543 -1.7556 -4.1847 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_40_12130088_14772022.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 22:42:41 Heat of formation + Delta-G solvation = -8.726912 kcal Electronic energy + Delta-G solvation = -28685.258111 eV Core-core repulsion = 24723.867373 eV Total energy + Delta-G solvation = -3961.390738 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 366.079 amu Computer time = 2.19 seconds Orbital eigenvalues (eV) -41.13870 -39.56570 -39.06586 -38.20783 -37.52269 -36.62815 -35.64372 -32.07143 -31.98076 -31.70934 -28.18425 -27.48049 -26.65654 -24.61432 -24.23251 -23.50326 -21.91471 -21.64833 -20.42079 -19.64751 -19.05136 -18.62359 -18.22041 -18.00269 -17.56340 -16.94187 -16.61776 -16.28288 -16.01006 -15.87168 -15.56438 -15.13486 -14.98675 -14.84680 -14.60318 -14.35242 -14.20450 -14.13367 -13.94952 -13.72315 -13.44201 -13.24192 -13.03045 -12.99260 -12.95544 -12.79953 -12.64515 -12.54597 -12.32037 -12.22329 -11.99460 -11.66786 -11.52176 -11.37512 -11.16971 -10.98797 -10.25485 -10.07583 -9.76307 -9.72950 -9.50230 -5.27758 -0.55153 -0.36539 0.31700 0.48976 0.55678 0.62020 0.97128 1.17929 1.41084 1.70993 2.22806 2.77510 2.89118 3.04578 3.42494 3.50594 3.54755 3.58197 3.68415 3.94996 4.04608 4.08643 4.11628 4.17531 4.20268 4.25135 4.28868 4.35822 4.42428 4.56730 4.62737 4.68029 4.71032 4.77384 4.79444 4.87922 4.92675 4.97857 5.06394 5.15655 5.16636 5.18357 5.25940 5.45231 5.63572 5.69313 5.80096 6.06367 6.15906 6.20098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.531 6.531 2 C -0.068 4.068 3 Si 0.669 3.331 4 C -0.053 4.053 5 C -0.667 4.667 6 S 2.720 3.280 7 O -0.957 6.957 8 O -0.963 6.963 9 N -1.089 6.089 10 C 0.131 3.869 11 C -0.113 4.113 12 H 0.099 0.901 13 C -0.122 4.122 14 C -0.074 4.074 15 H 0.098 0.902 16 C -0.071 4.071 17 C -0.118 4.118 18 C -0.119 4.119 19 C -0.125 4.125 20 C -0.118 4.118 21 C -0.117 4.117 22 C -0.130 4.130 23 C -0.076 4.076 24 C -0.213 4.213 25 S 0.157 5.843 26 H 0.392 0.608 27 H 0.112 0.888 28 H -0.237 1.237 29 H -0.235 1.235 30 H 0.419 0.581 31 H 0.077 0.923 32 H 0.062 0.938 33 H 0.087 0.913 34 H 0.072 0.928 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.121 0.879 38 H 0.122 0.878 39 H 0.123 0.877 40 H 0.072 0.928 41 H 0.090 0.910 42 H 0.158 0.842 43 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.400 4.795 -0.486 5.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.341 6.341 2 C -0.179 4.179 3 Si 0.566 3.434 4 C -0.174 4.174 5 C -0.766 4.766 6 S 2.806 3.194 7 O -0.947 6.947 8 O -0.953 6.953 9 N -0.851 5.851 10 C 0.005 3.995 11 C -0.133 4.133 12 H 0.117 0.883 13 C -0.160 4.160 14 C -0.093 4.093 15 H 0.116 0.884 16 C -0.071 4.071 17 C -0.136 4.136 18 C -0.137 4.137 19 C -0.143 4.143 20 C -0.136 4.136 21 C -0.135 4.135 22 C -0.167 4.167 23 C -0.105 4.105 24 C -0.348 4.348 25 S 0.421 5.579 26 H 0.243 0.757 27 H 0.129 0.871 28 H -0.161 1.161 29 H -0.158 1.158 30 H 0.256 0.744 31 H 0.096 0.904 32 H 0.081 0.919 33 H 0.105 0.895 34 H 0.091 0.909 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.139 0.861 38 H 0.140 0.860 39 H 0.141 0.859 40 H 0.090 0.910 41 H 0.108 0.892 42 H 0.176 0.824 43 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 2.442 5.696 -0.817 6.251 hybrid contribution -1.756 -0.610 0.280 1.879 sum 0.686 5.085 -0.537 5.160 Atomic orbital electron populations 1.86499 1.16567 1.80347 1.50699 1.24501 0.85468 1.11405 0.96516 0.95004 0.91263 0.74018 0.83091 1.23750 0.99026 0.96139 0.98450 1.29944 1.24980 1.10283 1.11420 1.01188 0.72485 0.72651 0.73090 1.93560 1.84328 1.86322 1.30514 1.93580 1.84701 1.44763 1.72289 1.55221 1.44761 1.71216 1.13943 1.21250 0.94607 1.00514 0.83121 1.22704 0.92835 0.98783 0.99013 0.88283 1.23043 0.94989 1.01035 0.96952 1.21499 0.95011 0.97718 0.95050 0.88419 1.19719 0.94384 0.96019 0.96985 1.21074 0.94530 1.00083 0.97903 1.21179 0.99963 0.96172 0.96371 1.21193 0.95559 0.97461 1.00120 1.21188 0.95097 0.99859 0.97416 1.21047 1.00166 0.95885 0.96439 1.23221 0.95851 0.97354 1.00261 1.19767 0.95373 1.01183 0.94144 1.25899 1.04487 0.99346 1.05091 1.84195 1.30696 1.24840 1.18178 0.75710 0.87070 1.16060 1.15840 0.74444 0.90446 0.91930 0.89454 0.90914 0.86210 0.86100 0.86130 0.86006 0.85926 0.90973 0.89175 0.82441 0.80661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 1.17 8.00 -46.35 -0.37 0.80 16 2 C -0.07 0.08 2.12 36.00 0.08 0.16 16 3 Si 0.67 -1.50 31.11 -169.99 -5.29 -6.79 16 4 C -0.05 -0.03 5.78 -36.01 -0.21 -0.24 16 5 C -0.67 -1.22 5.75 -41.21 -0.24 -1.45 16 6 S 2.72 7.39 4.92 -107.50 -0.53 6.86 16 7 O -0.96 -4.62 16.63 -62.88 -1.05 -5.67 16 8 O -0.96 -5.29 16.84 -57.17 -0.96 -6.26 16 9 N -1.09 0.39 4.13 -10.61 -0.04 0.35 16 10 C 0.13 -0.12 6.06 -4.04 -0.02 -0.14 16 11 C -0.11 0.21 3.80 -89.81 -0.34 -0.14 16 12 H 0.10 -0.26 8.12 -51.93 -0.42 -0.68 16 13 C -0.12 0.17 7.11 -25.92 -0.18 -0.02 16 14 C -0.07 0.05 3.98 -90.96 -0.36 -0.31 16 15 H 0.10 -0.13 8.09 -51.93 -0.42 -0.55 16 16 C -0.07 -0.07 5.29 -104.63 -0.55 -0.62 16 17 C -0.12 -0.14 9.71 -39.58 -0.38 -0.52 16 18 C -0.12 -0.14 10.05 -39.58 -0.40 -0.54 16 19 C -0.13 -0.16 10.05 -39.58 -0.40 -0.56 16 20 C -0.12 -0.15 10.05 -39.58 -0.40 -0.55 16 21 C -0.12 -0.14 8.62 -39.59 -0.34 -0.48 16 22 C -0.13 0.11 7.00 -25.92 -0.18 -0.07 16 23 C -0.08 -0.09 9.69 -41.21 -0.40 -0.49 16 24 C -0.21 0.07 11.23 29.04 0.33 0.39 16 25 S 0.16 -0.12 20.77 -107.50 -2.23 -2.35 16 26 H 0.39 -2.38 8.74 45.56 0.40 -1.98 16 27 H 0.11 -0.20 7.89 -51.93 -0.41 -0.61 16 28 H -0.24 -0.10 7.11 56.52 0.40 0.30 16 29 H -0.24 0.22 7.11 56.52 0.40 0.62 16 30 H 0.42 -0.89 7.53 -34.47 -0.26 -1.15 16 31 H 0.08 -0.03 7.45 -51.93 -0.39 -0.42 16 32 H 0.06 -0.07 8.14 -51.93 -0.42 -0.49 16 33 H 0.09 -0.10 7.69 -51.93 -0.40 -0.50 16 34 H 0.07 -0.12 8.14 -51.93 -0.42 -0.54 16 35 H 0.12 -0.05 8.05 -52.49 -0.42 -0.47 16 36 H 0.12 -0.06 8.06 -52.49 -0.42 -0.48 16 37 H 0.12 -0.04 8.06 -52.49 -0.42 -0.46 16 38 H 0.12 -0.03 8.06 -52.49 -0.42 -0.45 16 39 H 0.12 0.00 6.64 -52.48 -0.35 -0.35 16 40 H 0.07 -0.07 8.14 -51.92 -0.42 -0.49 16 41 H 0.09 -0.02 6.05 -51.93 -0.31 -0.34 16 42 H 0.16 0.08 7.74 -52.48 -0.41 -0.33 16 43 H 0.18 -0.48 8.06 -52.49 -0.42 -0.90 16 LS Contribution 373.54 15.07 5.63 5.63 Total: 0.00 -8.87 373.54 -14.40 -23.27 By element: Atomic # 1 Polarization: -4.72 SS G_CDS: -5.55 Total: -10.27 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: -4.01 Total: -5.57 kcal Atomic # 7 Polarization: 0.39 SS G_CDS: -0.04 Total: 0.35 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: -2.38 Total: -11.13 kcal Atomic # 14 Polarization: -1.50 SS G_CDS: -5.29 Total: -6.79 kcal Atomic # 16 Polarization: 7.27 SS G_CDS: -2.76 Total: 4.50 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -8.87 -14.40 -23.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_12130088_14772022.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.546 kcal (2) G-P(sol) polarization free energy of solvation -8.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.19 seconds