Wall clock time and date at job start Fri Mar 5 2021 22:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42907 * 1 3 3 Si 1.86304 * 109.46825 * 2 1 4 4 C 1.50698 * 109.47094 * 239.99559 * 2 1 3 5 5 C 1.33383 * 125.20725 * 316.81752 * 4 2 1 6 6 S 1.76198 * 122.53644 * 0.02753 * 5 4 2 7 7 O 1.42102 * 106.40454 * 313.34974 * 6 5 4 8 8 O 1.42102 * 106.40176 * 180.42848 * 6 5 4 9 9 N 1.65603 * 107.21839 * 66.88738 * 6 5 4 10 10 C 1.46503 * 119.99845 * 63.80862 * 9 6 5 11 11 C 1.53005 * 109.46873 * 163.56782 * 10 9 6 12 12 H 1.08997 * 112.85214 * 43.80292 * 11 10 9 13 13 C 1.53780 * 113.60968 * 174.99520 * 11 10 9 14 14 C 1.53784 * 87.08154 * 139.98039 * 13 11 10 15 15 H 1.09003 * 113.61284 * 89.19697 * 14 13 11 16 16 C 1.50700 * 113.61885 * 220.02136 * 14 13 11 17 17 C 1.38235 * 119.99670 * 240.00200 * 16 14 13 18 18 C 1.38241 * 119.99697 * 179.72273 * 17 16 14 19 19 C 1.38234 * 119.99986 * 0.25416 * 18 17 16 20 20 C 1.38243 * 120.00140 * 359.97438 * 19 18 17 21 21 C 1.38233 * 120.00190 * 60.25241 * 16 14 13 22 22 C 1.53776 * 113.61365 * 272.48941 * 11 10 9 23 23 C 1.38422 * 114.92246 * 179.75379 * 5 4 2 24 24 C 1.33385 * 114.92307 * 0.25056 * 23 5 4 25 25 S 1.75887 * 109.59248 * 359.97438 * 24 23 5 26 26 H 0.96703 * 114.00121 * 300.00018 * 1 2 3 27 27 H 1.08999 * 109.47173 * 119.99509 * 2 1 3 28 28 H 1.48500 * 109.99471 * 299.99536 * 3 2 1 29 29 H 1.48493 * 110.00408 * 61.31724 * 3 2 1 30 30 H 0.96998 * 120.00221 * 243.80175 * 9 6 5 31 31 H 1.08990 * 109.47480 * 43.56413 * 10 9 6 32 32 H 1.09000 * 109.46981 * 283.56188 * 10 9 6 33 33 H 1.09007 * 113.61756 * 25.43515 * 13 11 10 34 34 H 1.09001 * 113.69039 * 254.53740 * 13 11 10 35 35 H 1.07998 * 120.00116 * 359.97438 * 17 16 14 36 36 H 1.07999 * 119.99818 * 180.27155 * 18 17 16 37 37 H 1.07998 * 119.99930 * 180.02562 * 19 18 17 38 38 H 1.08000 * 120.00024 * 180.02562 * 20 19 18 39 39 H 1.08007 * 119.99844 * 0.02738 * 21 16 14 40 40 H 1.09008 * 113.61041 * 105.47132 * 22 11 10 41 41 H 1.09007 * 113.61830 * 334.57333 * 22 11 10 42 42 H 1.08004 * 122.53887 * 180.22922 * 23 5 4 43 43 H 1.07994 * 125.20696 * 180.02562 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 1.4385 -1.8514 -1.7147 6 16 0.0945 -2.7009 -0.9554 7 8 0.3824 -2.7458 0.4354 8 8 -0.1392 -3.8634 -1.7386 9 7 -1.2476 -1.7456 -1.1245 10 6 -1.7723 -1.4493 -2.4598 11 6 -3.2017 -0.9169 -2.3395 12 1 -3.3155 -0.1872 -1.5378 13 6 -3.8033 -0.4594 -3.6788 14 6 -5.1225 -1.0990 -3.2147 15 1 -5.7635 -0.4194 -2.6531 16 6 -5.8587 -1.8268 -4.3099 17 6 -7.1358 -1.4336 -4.6637 18 6 -7.8089 -2.0975 -5.6722 19 6 -7.2069 -3.1580 -6.3233 20 6 -5.9315 -3.5542 -5.9662 21 6 -5.2589 -2.8908 -4.9571 22 6 -4.2714 -2.0215 -2.3262 23 6 2.0589 -2.3142 -2.8623 24 6 3.0591 -1.5519 -3.3070 25 16 3.2593 -0.1635 -2.2459 26 1 -0.3933 0.4417 0.7651 27 1 1.7924 -0.5137 0.8900 28 1 1.5615 2.4678 -1.2086 29 1 1.5879 2.4587 1.2241 30 1 -1.6863 -1.3823 -0.3394 31 1 -1.7727 -2.3589 -3.0602 32 1 -1.1440 -0.6982 -2.9386 33 1 -3.3616 -0.9500 -4.5462 34 1 -3.8577 0.6238 -3.7872 35 1 -7.6062 -0.6051 -4.1550 36 1 -8.8050 -1.7875 -5.9517 37 1 -7.7326 -3.6764 -7.1115 38 1 -5.4610 -4.3825 -6.4752 39 1 -4.2628 -3.2009 -4.6776 40 1 -4.7032 -2.1993 -1.3412 41 1 -3.9577 -2.9392 -2.8238 42 1 1.7563 -3.2239 -3.3597 43 1 3.6543 -1.7556 -4.1847 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_12130088_14772022.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 22:42:40 Heat of formation + Delta-G solvation = -5.846918 kcal Electronic energy + Delta-G solvation = -28685.133225 eV Core-core repulsion = 24723.867373 eV Total energy + Delta-G solvation = -3961.265852 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 366.079 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.10660 -39.51865 -39.06232 -38.39002 -37.50104 -36.92295 -35.65645 -32.08977 -31.93201 -31.74615 -28.17231 -27.44994 -26.57574 -24.60669 -24.20403 -23.53705 -21.91497 -21.68866 -20.41213 -19.72769 -18.96223 -18.61507 -18.25769 -18.01231 -17.62916 -16.97375 -16.60265 -16.18990 -16.04319 -15.90320 -15.61600 -15.17184 -14.96465 -14.83169 -14.61221 -14.32798 -14.21817 -14.09745 -13.94134 -13.66920 -13.43658 -13.31302 -13.25916 -13.15806 -12.94599 -12.91601 -12.70740 -12.53325 -12.32008 -12.21319 -11.98792 -11.70332 -11.46569 -11.30929 -11.13712 -10.86709 -10.24412 -10.05497 -9.82632 -9.68751 -9.54215 -5.09504 -0.62975 -0.43303 0.35161 0.43808 0.49286 0.65992 1.07265 1.16696 1.55540 1.84347 2.14153 2.71674 2.84309 3.11791 3.44213 3.53754 3.59502 3.64967 3.69765 3.99320 4.07136 4.11416 4.15405 4.17823 4.28262 4.29268 4.32734 4.41663 4.48792 4.58689 4.63517 4.67160 4.73234 4.81786 4.86724 4.94016 4.95514 5.01163 5.12469 5.14885 5.15453 5.17367 5.30504 5.51648 5.59330 5.63701 5.78644 6.12728 6.28948 6.45891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.540 6.540 2 C -0.079 4.079 3 Si 0.738 3.262 4 C -0.065 4.065 5 C -0.682 4.682 6 S 2.728 3.272 7 O -0.983 6.983 8 O -0.999 6.999 9 N -1.078 6.078 10 C 0.130 3.870 11 C -0.102 4.102 12 H 0.114 0.886 13 C -0.119 4.119 14 C -0.073 4.073 15 H 0.107 0.893 16 C -0.078 4.078 17 C -0.131 4.131 18 C -0.130 4.130 19 C -0.139 4.139 20 C -0.131 4.131 21 C -0.130 4.130 22 C -0.134 4.134 23 C -0.099 4.099 24 C -0.213 4.213 25 S 0.191 5.809 26 H 0.409 0.591 27 H 0.117 0.883 28 H -0.272 1.272 29 H -0.250 1.250 30 H 0.428 0.572 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.133 0.867 36 H 0.135 0.865 37 H 0.133 0.867 38 H 0.132 0.868 39 H 0.128 0.872 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.155 0.845 43 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.771 6.213 -0.301 6.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.353 6.353 2 C -0.189 4.189 3 Si 0.637 3.363 4 C -0.186 4.186 5 C -0.783 4.783 6 S 2.817 3.183 7 O -0.973 6.973 8 O -0.989 6.989 9 N -0.843 5.843 10 C 0.003 3.997 11 C -0.122 4.122 12 H 0.132 0.868 13 C -0.157 4.157 14 C -0.091 4.091 15 H 0.125 0.875 16 C -0.078 4.078 17 C -0.148 4.148 18 C -0.148 4.148 19 C -0.157 4.157 20 C -0.149 4.149 21 C -0.148 4.148 22 C -0.171 4.171 23 C -0.127 4.127 24 C -0.348 4.348 25 S 0.454 5.546 26 H 0.262 0.738 27 H 0.134 0.866 28 H -0.197 1.197 29 H -0.174 1.174 30 H 0.267 0.733 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.151 0.849 36 H 0.152 0.848 37 H 0.151 0.849 38 H 0.150 0.850 39 H 0.146 0.854 40 H 0.092 0.908 41 H 0.099 0.901 42 H 0.173 0.827 43 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 2.790 7.089 -0.597 7.642 hybrid contribution -1.876 -1.006 0.190 2.137 sum 0.915 6.083 -0.407 6.165 Atomic orbital electron populations 1.86450 1.16132 1.80805 1.51905 1.24742 0.86062 1.12210 0.95931 0.94161 0.90287 0.71615 0.80217 1.24118 0.99409 0.95960 0.99082 1.29743 1.25288 1.11061 1.12213 1.00556 0.72978 0.72569 0.72205 1.93514 1.84959 1.86900 1.31961 1.93532 1.85426 1.47140 1.72809 1.54944 1.43875 1.70797 1.14642 1.21320 0.95323 1.00385 0.82624 1.22660 0.91678 0.98523 0.99315 0.86777 1.23020 0.94490 1.01332 0.96896 1.21537 0.95187 0.97742 0.94659 0.87515 1.19955 0.94580 0.96011 0.97301 1.21336 0.94755 1.00611 0.98140 1.21447 1.00704 0.96204 0.96436 1.21438 0.95770 0.97817 1.00659 1.21430 0.95432 1.00352 0.97701 1.21227 1.00597 0.96248 0.96697 1.23228 0.96322 0.97303 1.00231 1.19863 0.96423 1.01826 0.94581 1.26245 1.03893 0.99038 1.05632 1.84063 1.29408 1.23965 1.17146 0.73786 0.86582 1.19742 1.17429 0.73330 0.91290 0.91385 0.89953 0.90212 0.84892 0.84756 0.84927 0.85026 0.85424 0.90786 0.90141 0.82705 0.78436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 2.56 8.00 -138.35 -1.11 1.45 16 2 C -0.08 0.22 2.12 71.24 0.15 0.37 16 3 Si 0.74 -3.84 31.11 68.60 2.13 -1.70 16 4 C -0.06 -0.08 5.78 24.59 0.14 0.06 16 5 C -0.68 -3.00 5.75 21.21 0.12 -2.87 16 6 S 2.73 18.38 4.92 -56.49 -0.28 18.10 16 7 O -0.98 -10.65 16.63 -122.55 -2.04 -12.69 16 8 O -1.00 -13.03 16.84 -128.00 -2.16 -15.19 16 9 N -1.08 0.21 4.13 -187.49 -0.77 -0.56 16 10 C 0.13 -0.18 6.06 86.38 0.52 0.35 16 11 C -0.10 0.40 3.80 -10.27 -0.04 0.36 16 12 H 0.11 -0.76 8.12 -2.39 -0.02 -0.78 16 13 C -0.12 0.36 7.11 31.12 0.22 0.58 16 14 C -0.07 0.11 3.98 -11.01 -0.04 0.07 16 15 H 0.11 -0.36 8.09 -2.39 -0.02 -0.38 16 16 C -0.08 -0.19 5.29 -19.87 -0.11 -0.30 16 17 C -0.13 -0.32 9.71 22.27 0.22 -0.11 16 18 C -0.13 -0.35 10.05 22.27 0.22 -0.13 16 19 C -0.14 -0.43 10.05 22.27 0.22 -0.21 16 20 C -0.13 -0.46 10.05 22.27 0.22 -0.23 16 21 C -0.13 -0.44 8.62 22.27 0.19 -0.24 16 22 C -0.13 0.19 7.00 31.12 0.22 0.41 16 23 C -0.10 -0.31 9.69 21.21 0.21 -0.11 16 24 C -0.21 0.22 11.23 66.72 0.75 0.97 16 25 S 0.19 -0.43 20.77 -56.49 -1.17 -1.61 16 26 H 0.41 -5.27 8.74 -74.05 -0.65 -5.91 16 27 H 0.12 -0.44 7.89 -2.39 -0.02 -0.46 16 28 H -0.27 -0.17 7.11 99.48 0.71 0.54 16 29 H -0.25 0.69 7.11 99.48 0.71 1.40 16 30 H 0.43 -1.81 7.53 -96.74 -0.73 -2.54 16 31 H 0.07 0.04 7.45 -2.39 -0.02 0.02 16 32 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 33 H 0.08 -0.15 7.69 -2.38 -0.02 -0.17 16 34 H 0.08 -0.33 8.14 -2.39 -0.02 -0.35 16 35 H 0.13 -0.14 8.05 -2.91 -0.02 -0.16 16 36 H 0.13 -0.13 8.06 -2.91 -0.02 -0.15 16 37 H 0.13 -0.04 8.06 -2.91 -0.02 -0.07 16 38 H 0.13 0.05 8.06 -2.91 -0.02 0.03 16 39 H 0.13 0.18 6.64 -2.91 -0.02 0.16 16 40 H 0.07 -0.13 8.14 -2.38 -0.02 -0.15 16 41 H 0.08 0.05 6.05 -2.38 -0.01 0.04 16 42 H 0.16 0.42 7.74 -2.91 -0.02 0.40 16 43 H 0.20 -1.29 8.06 -2.91 -0.02 -1.31 16 Total: 0.00 -20.78 373.54 -2.46 -23.24 By element: Atomic # 1 Polarization: -9.72 SS G_CDS: -0.29 Total: -10.01 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: 3.22 Total: -1.03 kcal Atomic # 7 Polarization: 0.21 SS G_CDS: -0.77 Total: -0.56 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: -5.30 Total: -26.43 kcal Atomic # 14 Polarization: -3.84 SS G_CDS: 2.13 Total: -1.70 kcal Atomic # 16 Polarization: 17.94 SS G_CDS: -1.45 Total: 16.49 kcal Total: -20.78 -2.46 -23.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_12130088_14772022.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.392 kcal (2) G-P(sol) polarization free energy of solvation -20.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds