Wall clock time and date at job start Fri Mar 5 2021 22:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86294 * 109.47304 * 2 1 4 4 C 1.50694 * 109.46949 * 239.99640 * 2 1 3 5 5 C 1.33390 * 125.20760 * 300.28942 * 4 2 1 6 6 C 1.38425 * 114.92171 * 180.20946 * 5 4 2 7 7 S 1.76197 * 122.53753 * 179.76056 * 6 5 4 8 8 O 1.42104 * 106.40440 * 156.19667 * 7 6 5 9 9 O 1.42097 * 106.40660 * 23.27521 * 7 6 5 10 10 N 1.65607 * 107.21991 * 269.73437 * 7 6 5 11 11 C 1.46499 * 119.99678 * 64.99667 * 10 7 6 12 12 C 1.53003 * 109.46599 * 165.00431 * 11 10 7 13 13 H 1.09005 * 112.85007 * 316.19372 * 12 11 10 14 14 C 1.53949 * 113.74437 * 87.40767 * 12 11 10 15 15 C 1.53776 * 87.02173 * 139.94322 * 14 12 11 16 16 H 1.08997 * 113.62037 * 89.22750 * 15 14 12 17 17 C 1.50706 * 113.61300 * 220.05100 * 15 14 12 18 18 C 1.38238 * 119.99744 * 219.13576 * 17 15 14 19 19 C 1.38234 * 119.99693 * 179.97438 * 18 17 15 20 20 C 1.38234 * 120.00240 * 359.97438 * 19 18 17 21 21 C 1.38233 * 120.00037 * 0.26327 * 20 19 18 22 22 C 1.38234 * 120.00173 * 39.10958 * 17 15 14 23 23 C 1.53778 * 113.61076 * 185.00369 * 12 11 10 24 24 C 1.33381 * 114.92109 * 359.49088 * 6 5 4 25 25 S 1.75882 * 109.59498 * 0.27039 * 24 6 5 26 26 H 0.96696 * 113.99644 * 60.00395 * 1 2 3 27 27 H 1.09003 * 109.46984 * 119.99980 * 2 1 3 28 28 H 1.48497 * 110.00125 * 59.99877 * 3 2 1 29 29 H 1.48499 * 110.00269 * 181.32217 * 3 2 1 30 30 H 1.07999 * 122.53851 * 359.96694 * 5 4 2 31 31 H 0.97005 * 119.99903 * 245.00358 * 10 7 6 32 32 H 1.09001 * 109.46749 * 45.00701 * 11 10 7 33 33 H 1.08999 * 109.47467 * 285.00266 * 11 10 7 34 34 H 1.08998 * 113.61415 * 25.41881 * 14 12 11 35 35 H 1.09006 * 113.66568 * 254.46941 * 14 12 11 36 36 H 1.07997 * 119.99846 * 359.97438 * 18 17 15 37 37 H 1.07999 * 119.99751 * 179.97438 * 19 18 17 38 38 H 1.08002 * 119.99744 * 179.97438 * 20 19 18 39 39 H 1.07998 * 120.00391 * 179.72199 * 21 20 19 40 40 H 1.07999 * 120.00025 * 0.02562 * 22 17 15 41 41 H 1.09005 * 113.61922 * 105.38975 * 23 12 11 42 42 H 1.09000 * 113.69662 * 334.49119 * 23 12 11 43 43 H 1.08002 * 125.20274 * 180.29353 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 1.6694 -1.9797 -1.5464 6 6 2.2446 -2.4175 -2.7268 7 16 2.0350 -4.0592 -3.3313 8 8 2.2490 -4.0005 -4.7349 9 8 0.8366 -4.5518 -2.7478 10 7 3.2682 -4.9723 -2.7082 11 6 3.3544 -5.1982 -1.2633 12 6 4.3258 -6.3468 -0.9839 13 1 4.1867 -7.1923 -1.6578 14 6 5.7931 -5.8998 -0.8530 15 6 5.9133 -6.9075 0.3023 16 1 6.2083 -7.9065 -0.0185 17 6 6.7299 -6.4005 1.4631 18 6 7.5883 -7.2548 2.1296 19 6 8.3377 -6.7897 3.1940 20 6 8.2292 -5.4702 3.5915 21 6 7.3672 -4.6171 2.9280 22 6 6.6210 -5.0811 1.8609 23 6 4.3966 -6.7466 0.4993 24 6 2.9649 -1.5009 -3.3749 25 16 2.9463 0.0093 -2.4735 26 1 -0.3932 0.4416 -0.7651 27 1 1.7924 -0.5138 0.8900 28 1 1.5616 2.4678 1.2084 29 1 3.5346 1.7702 -0.0322 30 1 1.0582 -2.6184 -0.9261 31 1 3.9334 -5.3574 -3.2999 32 1 2.3681 -5.4541 -0.8761 33 1 3.7128 -4.2923 -0.7746 34 1 5.9071 -4.8617 -0.5407 35 1 6.4063 -6.1523 -1.7182 36 1 7.6733 -8.2856 1.8188 37 1 9.0080 -7.4572 3.7150 38 1 8.8144 -5.1069 4.4233 39 1 7.2790 -3.5874 3.2414 40 1 5.9504 -4.4137 1.3401 41 1 3.8840 -7.6818 0.7245 42 1 4.1282 -5.9415 1.1833 43 1 3.4804 -1.6613 -4.3103 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_40_12130088_15065232.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 22:42:46 Heat of formation + Delta-G solvation = -19.287212 kcal Electronic energy + Delta-G solvation = -27906.372365 eV Core-core repulsion = 23944.523698 eV Total energy + Delta-G solvation = -3961.848667 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 366.079 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.23518 -39.54833 -39.17170 -38.21439 -37.58995 -36.84322 -35.92522 -32.17655 -31.87346 -31.79865 -28.37021 -27.28045 -26.76993 -24.99824 -24.67209 -23.59484 -21.96172 -21.43132 -20.48531 -19.99102 -19.26909 -18.55813 -18.06422 -17.87206 -17.60659 -17.21291 -16.60188 -16.40215 -16.18283 -15.83726 -15.69654 -15.42188 -14.99018 -14.92823 -14.85155 -14.32691 -14.30007 -14.16504 -14.08711 -13.95328 -13.57271 -13.47856 -13.18578 -13.12467 -13.03576 -12.92581 -12.70278 -12.54100 -12.41756 -12.24299 -12.10571 -11.67177 -11.61782 -11.48955 -11.20017 -10.80354 -10.62058 -10.22525 -9.92026 -9.84863 -9.58675 -5.28877 -0.75760 -0.51567 0.26315 0.40561 0.47128 0.52817 0.93965 1.10011 1.44685 1.76721 2.03783 2.72543 2.80618 3.17068 3.31955 3.41890 3.43531 3.49386 3.60750 3.78371 3.86460 3.92007 3.98479 4.06536 4.10548 4.16028 4.19709 4.28465 4.30846 4.40069 4.53715 4.57522 4.59635 4.63787 4.69014 4.76326 4.82342 4.84925 4.95587 5.02090 5.04853 5.07776 5.13860 5.34461 5.54991 5.61027 5.70783 5.84347 6.07329 6.36924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.532 6.532 2 C -0.026 4.026 3 Si 0.654 3.346 4 C -0.229 4.229 5 C -0.044 4.044 6 C -0.688 4.688 7 S 2.709 3.291 8 O -0.956 6.956 9 O -0.948 6.948 10 N -1.114 6.114 11 C 0.125 3.875 12 C -0.118 4.118 13 H 0.103 0.897 14 C -0.130 4.130 15 C -0.074 4.074 16 H 0.099 0.901 17 C -0.071 4.071 18 C -0.117 4.117 19 C -0.118 4.118 20 C -0.125 4.125 21 C -0.118 4.118 22 C -0.118 4.118 23 C -0.122 4.122 24 C -0.082 4.082 25 S 0.157 5.843 26 H 0.382 0.618 27 H 0.126 0.874 28 H -0.230 1.230 29 H -0.237 1.237 30 H 0.157 0.843 31 H 0.420 0.580 32 H 0.085 0.915 33 H 0.066 0.934 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.121 0.879 37 H 0.122 0.878 38 H 0.121 0.879 39 H 0.120 0.880 40 H 0.120 0.880 41 H 0.076 0.924 42 H 0.087 0.913 43 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.402 1.910 0.678 3.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.338 6.338 2 C -0.140 4.140 3 Si 0.553 3.447 4 C -0.347 4.347 5 C -0.073 4.073 6 C -0.787 4.787 7 S 2.796 3.204 8 O -0.946 6.946 9 O -0.938 6.938 10 N -0.875 5.875 11 C -0.001 4.001 12 C -0.138 4.138 13 H 0.121 0.879 14 C -0.167 4.167 15 C -0.092 4.092 16 H 0.117 0.883 17 C -0.071 4.071 18 C -0.135 4.135 19 C -0.136 4.136 20 C -0.143 4.143 21 C -0.136 4.136 22 C -0.136 4.136 23 C -0.160 4.160 24 C -0.221 4.221 25 S 0.420 5.580 26 H 0.230 0.770 27 H 0.143 0.857 28 H -0.153 1.153 29 H -0.161 1.161 30 H 0.175 0.825 31 H 0.255 0.745 32 H 0.103 0.897 33 H 0.085 0.915 34 H 0.106 0.894 35 H 0.091 0.909 36 H 0.139 0.861 37 H 0.140 0.860 38 H 0.139 0.861 39 H 0.139 0.861 40 H 0.138 0.862 41 H 0.095 0.905 42 H 0.106 0.894 43 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 3.803 3.479 1.049 5.260 hybrid contribution 0.234 -1.507 0.462 1.594 sum 4.037 1.971 1.511 4.740 Atomic orbital electron populations 1.86544 1.16345 1.81678 1.49198 1.24439 0.85433 1.09119 0.94977 0.94992 0.82057 0.77655 0.90010 1.25079 1.07771 0.98973 1.02852 1.19625 0.98051 0.95206 0.94441 1.30062 1.14118 1.26095 1.08413 1.01604 0.73154 0.72788 0.72890 1.93617 1.85591 1.86854 1.28537 1.93611 1.43238 1.78090 1.78828 1.55498 1.48302 1.67802 1.15851 1.21382 1.01132 0.98459 0.79099 1.22796 0.94742 0.98163 0.98109 0.87892 1.23241 0.95709 0.99498 0.98250 1.21492 0.94535 0.99759 0.93445 0.88256 1.19716 0.96952 0.93736 0.96675 1.21094 0.96592 0.99600 0.96191 1.21195 0.99358 0.95908 0.97110 1.21193 0.98994 0.93985 1.00103 1.21165 0.96652 0.99793 0.96028 1.20984 0.99924 0.95303 0.97366 1.23048 0.95004 1.02573 0.95388 1.25907 0.98110 0.95942 1.02123 1.84400 1.46851 1.13062 1.13651 0.77014 0.85726 1.15343 1.16140 0.82518 0.74469 0.89715 0.91528 0.89429 0.90873 0.86091 0.86017 0.86111 0.86148 0.86201 0.90548 0.89402 0.79705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 0.20 12.86 -35.23 -0.45 -0.26 16 2 C -0.03 0.03 2.96 36.00 0.11 0.14 16 3 Si 0.65 -1.15 30.97 -169.99 -5.26 -6.42 16 4 C -0.23 0.14 5.72 -36.01 -0.21 -0.06 16 5 C -0.04 -0.01 9.56 -41.21 -0.39 -0.40 16 6 C -0.69 -0.02 5.86 -41.21 -0.24 -0.26 16 7 S 2.71 2.42 5.80 -107.50 -0.62 1.80 16 8 O -0.96 -3.38 17.64 -57.17 -1.01 -4.39 16 9 O -0.95 -3.89 17.10 -57.17 -0.98 -4.86 16 10 N -1.11 2.20 6.00 -10.61 -0.06 2.14 16 11 C 0.13 -0.30 6.07 -4.04 -0.02 -0.33 16 12 C -0.12 0.34 3.78 -89.72 -0.34 0.00 16 13 H 0.10 -0.32 8.14 -51.93 -0.42 -0.74 16 14 C -0.13 0.34 7.03 -25.83 -0.18 0.15 16 15 C -0.07 0.13 3.98 -90.96 -0.36 -0.23 16 16 H 0.10 -0.21 8.09 -51.93 -0.42 -0.63 16 17 C -0.07 0.00 5.29 -104.62 -0.55 -0.55 16 18 C -0.12 -0.04 9.71 -39.58 -0.38 -0.43 16 19 C -0.12 -0.06 10.05 -39.58 -0.40 -0.46 16 20 C -0.12 -0.06 10.05 -39.58 -0.40 -0.46 16 21 C -0.12 -0.04 10.05 -39.58 -0.40 -0.44 16 22 C -0.12 0.00 8.54 -39.58 -0.34 -0.34 16 23 C -0.12 0.28 7.10 -25.92 -0.18 0.09 16 24 C -0.08 0.08 10.70 29.04 0.31 0.39 16 25 S 0.16 -0.24 20.58 -107.50 -2.21 -2.45 16 26 H 0.38 -1.53 8.70 45.56 0.40 -1.13 16 27 H 0.13 -0.17 7.96 -51.93 -0.41 -0.58 16 28 H -0.23 -0.22 7.11 56.52 0.40 0.18 16 29 H -0.24 -0.02 7.11 56.52 0.40 0.39 16 30 H 0.16 0.01 7.96 -52.49 -0.42 -0.40 16 31 H 0.42 -1.50 8.65 -34.48 -0.30 -1.80 16 32 H 0.08 -0.16 7.75 -51.93 -0.40 -0.56 16 33 H 0.07 -0.23 7.86 -51.93 -0.41 -0.63 16 34 H 0.09 -0.22 6.16 -51.93 -0.32 -0.54 16 35 H 0.07 -0.20 8.14 -51.93 -0.42 -0.62 16 36 H 0.12 -0.13 8.05 -52.49 -0.42 -0.55 16 37 H 0.12 -0.13 8.06 -52.49 -0.42 -0.55 16 38 H 0.12 -0.12 8.06 -52.49 -0.42 -0.54 16 39 H 0.12 -0.14 8.06 -52.49 -0.42 -0.57 16 40 H 0.12 -0.19 6.73 -52.49 -0.35 -0.54 16 41 H 0.08 -0.17 8.14 -51.93 -0.42 -0.59 16 42 H 0.09 -0.19 7.60 -51.93 -0.39 -0.59 16 43 H 0.19 -0.52 8.00 -52.49 -0.42 -0.94 16 LS Contribution 383.70 15.07 5.78 5.78 Total: 0.00 -9.39 383.70 -14.41 -23.80 By element: Atomic # 1 Polarization: -6.36 SS G_CDS: -5.61 Total: -11.96 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: -3.98 Total: -3.18 kcal Atomic # 7 Polarization: 2.20 SS G_CDS: -0.06 Total: 2.14 kcal Atomic # 8 Polarization: -7.07 SS G_CDS: -2.44 Total: -9.51 kcal Atomic # 14 Polarization: -1.15 SS G_CDS: -5.26 Total: -6.42 kcal Atomic # 16 Polarization: 2.19 SS G_CDS: -2.84 Total: -0.65 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -9.39 -14.41 -23.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_12130088_15065232.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.512 kcal (2) G-P(sol) polarization free energy of solvation -9.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds