Wall clock time and date at job start Fri Mar 5 2021 22:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86294 * 109.47304 * 2 1 4 4 C 1.50694 * 109.46949 * 239.99640 * 2 1 3 5 5 C 1.33390 * 125.20760 * 300.28942 * 4 2 1 6 6 C 1.38425 * 114.92171 * 180.20946 * 5 4 2 7 7 S 1.76197 * 122.53753 * 179.76056 * 6 5 4 8 8 O 1.42104 * 106.40440 * 156.19667 * 7 6 5 9 9 O 1.42097 * 106.40660 * 23.27521 * 7 6 5 10 10 N 1.65607 * 107.21991 * 269.73437 * 7 6 5 11 11 C 1.46499 * 119.99678 * 64.99667 * 10 7 6 12 12 C 1.53003 * 109.46599 * 165.00431 * 11 10 7 13 13 H 1.09005 * 112.85007 * 316.19372 * 12 11 10 14 14 C 1.53949 * 113.74437 * 87.40767 * 12 11 10 15 15 C 1.53776 * 87.02173 * 139.94322 * 14 12 11 16 16 H 1.08997 * 113.62037 * 89.22750 * 15 14 12 17 17 C 1.50706 * 113.61300 * 220.05100 * 15 14 12 18 18 C 1.38238 * 119.99744 * 219.13576 * 17 15 14 19 19 C 1.38234 * 119.99693 * 179.97438 * 18 17 15 20 20 C 1.38234 * 120.00240 * 359.97438 * 19 18 17 21 21 C 1.38233 * 120.00037 * 0.26327 * 20 19 18 22 22 C 1.38234 * 120.00173 * 39.10958 * 17 15 14 23 23 C 1.53778 * 113.61076 * 185.00369 * 12 11 10 24 24 C 1.33381 * 114.92109 * 359.49088 * 6 5 4 25 25 S 1.75882 * 109.59498 * 0.27039 * 24 6 5 26 26 H 0.96696 * 113.99644 * 60.00395 * 1 2 3 27 27 H 1.09003 * 109.46984 * 119.99980 * 2 1 3 28 28 H 1.48497 * 110.00125 * 59.99877 * 3 2 1 29 29 H 1.48499 * 110.00269 * 181.32217 * 3 2 1 30 30 H 1.07999 * 122.53851 * 359.96694 * 5 4 2 31 31 H 0.97005 * 119.99903 * 245.00358 * 10 7 6 32 32 H 1.09001 * 109.46749 * 45.00701 * 11 10 7 33 33 H 1.08999 * 109.47467 * 285.00266 * 11 10 7 34 34 H 1.08998 * 113.61415 * 25.41881 * 14 12 11 35 35 H 1.09006 * 113.66568 * 254.46941 * 14 12 11 36 36 H 1.07997 * 119.99846 * 359.97438 * 18 17 15 37 37 H 1.07999 * 119.99751 * 179.97438 * 19 18 17 38 38 H 1.08002 * 119.99744 * 179.97438 * 20 19 18 39 39 H 1.07998 * 120.00391 * 179.72199 * 21 20 19 40 40 H 1.07999 * 120.00025 * 0.02562 * 22 17 15 41 41 H 1.09005 * 113.61922 * 105.38975 * 23 12 11 42 42 H 1.09000 * 113.69662 * 334.49119 * 23 12 11 43 43 H 1.08002 * 125.20274 * 180.29353 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 1.6694 -1.9797 -1.5464 6 6 2.2446 -2.4175 -2.7268 7 16 2.0350 -4.0592 -3.3313 8 8 2.2490 -4.0005 -4.7349 9 8 0.8366 -4.5518 -2.7478 10 7 3.2682 -4.9723 -2.7082 11 6 3.3544 -5.1982 -1.2633 12 6 4.3258 -6.3468 -0.9839 13 1 4.1867 -7.1923 -1.6578 14 6 5.7931 -5.8998 -0.8530 15 6 5.9133 -6.9075 0.3023 16 1 6.2083 -7.9065 -0.0185 17 6 6.7299 -6.4005 1.4631 18 6 7.5883 -7.2548 2.1296 19 6 8.3377 -6.7897 3.1940 20 6 8.2292 -5.4702 3.5915 21 6 7.3672 -4.6171 2.9280 22 6 6.6210 -5.0811 1.8609 23 6 4.3966 -6.7466 0.4993 24 6 2.9649 -1.5009 -3.3749 25 16 2.9463 0.0093 -2.4735 26 1 -0.3932 0.4416 -0.7651 27 1 1.7924 -0.5138 0.8900 28 1 1.5616 2.4678 1.2084 29 1 3.5346 1.7702 -0.0322 30 1 1.0582 -2.6184 -0.9261 31 1 3.9334 -5.3574 -3.2999 32 1 2.3681 -5.4541 -0.8761 33 1 3.7128 -4.2923 -0.7746 34 1 5.9071 -4.8617 -0.5407 35 1 6.4063 -6.1523 -1.7182 36 1 7.6733 -8.2856 1.8188 37 1 9.0080 -7.4572 3.7150 38 1 8.8144 -5.1069 4.4233 39 1 7.2790 -3.5874 3.2414 40 1 5.9504 -4.4137 1.3401 41 1 3.8840 -7.6818 0.7245 42 1 4.1282 -5.9415 1.1833 43 1 3.4804 -1.6613 -4.3103 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_12130088_15065232.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 22:42:44 Heat of formation + Delta-G solvation = -18.334442 kcal Electronic energy + Delta-G solvation = -27906.331050 eV Core-core repulsion = 23944.523698 eV Total energy + Delta-G solvation = -3961.807352 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 366.079 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.10719 -39.48922 -39.07630 -38.38474 -37.52426 -37.02628 -35.81940 -32.10864 -31.80985 -31.75339 -28.24569 -27.21003 -26.57470 -24.95097 -24.57593 -23.54583 -21.85435 -21.40205 -20.39245 -19.92406 -19.20123 -18.56932 -18.02744 -17.81283 -17.58707 -17.13268 -16.50930 -16.31979 -16.10329 -15.84052 -15.61302 -15.38333 -14.93597 -14.82848 -14.76209 -14.28110 -14.24013 -14.11035 -14.01857 -13.90797 -13.54358 -13.34473 -13.32183 -13.22683 -13.07002 -12.93816 -12.60667 -12.55831 -12.32843 -12.18889 -12.01762 -11.64455 -11.46087 -11.31489 -11.06560 -10.71739 -10.49586 -10.15349 -9.83284 -9.82997 -9.54383 -5.17079 -0.77831 -0.46602 0.34512 0.43503 0.48902 0.59836 0.96770 1.19361 1.53175 1.84321 2.06891 2.68609 2.83980 3.20333 3.42410 3.57979 3.61760 3.64118 3.69968 3.91676 3.99498 4.05998 4.10947 4.15853 4.20931 4.25760 4.27644 4.38244 4.49116 4.53998 4.62771 4.64959 4.67188 4.79276 4.87033 4.90884 4.95468 4.98268 5.05214 5.12382 5.15203 5.16229 5.27608 5.51075 5.58974 5.63382 5.77747 6.05194 6.12218 6.63343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.032 4.032 3 Si 0.725 3.275 4 C -0.233 4.233 5 C -0.057 4.057 6 C -0.693 4.693 7 S 2.726 3.274 8 O -0.985 6.985 9 O -0.985 6.985 10 N -1.103 6.103 11 C 0.120 3.880 12 C -0.110 4.110 13 H 0.108 0.892 14 C -0.126 4.126 15 C -0.076 4.076 16 H 0.103 0.897 17 C -0.077 4.077 18 C -0.132 4.132 19 C -0.131 4.131 20 C -0.140 4.140 21 C -0.131 4.131 22 C -0.126 4.126 23 C -0.122 4.122 24 C -0.085 4.085 25 S 0.187 5.813 26 H 0.396 0.604 27 H 0.125 0.875 28 H -0.270 1.270 29 H -0.257 1.257 30 H 0.152 0.848 31 H 0.429 0.571 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.131 0.869 37 H 0.132 0.868 38 H 0.131 0.869 39 H 0.132 0.868 40 H 0.133 0.867 41 H 0.075 0.925 42 H 0.087 0.913 43 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.947 2.451 0.215 4.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.357 6.357 2 C -0.144 4.144 3 Si 0.627 3.373 4 C -0.351 4.351 5 C -0.086 4.086 6 C -0.794 4.794 7 S 2.815 3.185 8 O -0.975 6.975 9 O -0.975 6.975 10 N -0.866 5.866 11 C -0.005 4.005 12 C -0.130 4.130 13 H 0.126 0.874 14 C -0.163 4.163 15 C -0.094 4.094 16 H 0.121 0.879 17 C -0.077 4.077 18 C -0.150 4.150 19 C -0.149 4.149 20 C -0.158 4.158 21 C -0.149 4.149 22 C -0.144 4.144 23 C -0.160 4.160 24 C -0.224 4.224 25 S 0.451 5.549 26 H 0.247 0.753 27 H 0.143 0.857 28 H -0.195 1.195 29 H -0.183 1.183 30 H 0.170 0.830 31 H 0.266 0.734 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.107 0.893 35 H 0.096 0.904 36 H 0.149 0.851 37 H 0.150 0.850 38 H 0.149 0.851 39 H 0.150 0.850 40 H 0.151 0.849 41 H 0.094 0.906 42 H 0.105 0.895 43 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 4.340 3.989 0.553 5.921 hybrid contribution 0.091 -1.634 0.670 1.769 sum 4.430 2.355 1.224 5.164 Atomic orbital electron populations 1.86508 1.16740 1.82117 1.50354 1.24584 0.85267 1.09675 0.94902 0.94146 0.79629 0.75484 0.88060 1.25178 1.07827 0.98871 1.03231 1.19657 0.98542 0.95651 0.94714 1.29812 1.15203 1.25594 1.08783 1.00762 0.72805 0.72978 0.71985 1.93571 1.86026 1.87428 1.30476 1.93563 1.45553 1.79097 1.79268 1.55209 1.47793 1.67331 1.16253 1.21509 1.01108 0.99310 0.78601 1.22732 0.94428 0.98033 0.97782 0.87425 1.23229 0.95735 0.99352 0.97972 1.21534 0.94486 1.00159 0.93219 0.87922 1.19950 0.96898 0.93802 0.97037 1.21340 0.96900 1.00326 0.96436 1.21432 0.99759 0.96283 0.97441 1.21428 0.99467 0.94227 1.00690 1.21421 0.96717 1.00486 0.96247 1.21206 1.00105 0.95644 0.97433 1.23050 0.94636 1.02586 0.95749 1.26215 0.97562 0.96017 1.02617 1.84303 1.45844 1.12143 1.12610 0.75329 0.85749 1.19544 1.18290 0.83033 0.73356 0.90313 0.90270 0.89253 0.90439 0.85146 0.85020 0.85130 0.85004 0.84890 0.90598 0.89457 0.78010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.42 12.86 -148.98 -1.92 -1.49 16 2 C -0.03 0.08 2.96 71.23 0.21 0.29 16 3 Si 0.72 -2.74 30.97 68.60 2.12 -0.62 16 4 C -0.23 0.39 5.72 24.59 0.14 0.53 16 5 C -0.06 -0.03 9.56 21.22 0.20 0.17 16 6 C -0.69 0.01 5.86 21.21 0.12 0.14 16 7 S 2.73 6.33 5.80 -56.49 -0.33 6.00 16 8 O -0.98 -7.42 17.64 -128.00 -2.26 -9.68 16 9 O -0.98 -9.23 17.10 -128.00 -2.19 -11.42 16 10 N -1.10 4.47 6.00 -187.49 -1.12 3.35 16 11 C 0.12 -0.61 6.07 86.38 0.52 -0.08 16 12 C -0.11 0.69 3.78 -10.21 -0.04 0.65 16 13 H 0.11 -0.75 8.14 -2.38 -0.02 -0.77 16 14 C -0.13 0.75 7.03 31.18 0.22 0.96 16 15 C -0.08 0.29 3.98 -11.01 -0.04 0.24 16 16 H 0.10 -0.47 8.09 -2.39 -0.02 -0.49 16 17 C -0.08 0.00 5.29 -19.86 -0.11 -0.11 16 18 C -0.13 -0.15 9.71 22.27 0.22 0.07 16 19 C -0.13 -0.20 10.05 22.27 0.22 0.02 16 20 C -0.14 -0.21 10.05 22.27 0.22 0.02 16 21 C -0.13 -0.11 10.05 22.27 0.22 0.11 16 22 C -0.13 0.01 8.54 22.27 0.19 0.20 16 23 C -0.12 0.58 7.10 31.12 0.22 0.80 16 24 C -0.09 0.24 10.70 66.72 0.71 0.95 16 25 S 0.19 -0.77 20.58 -56.49 -1.16 -1.93 16 26 H 0.40 -3.28 8.70 -74.06 -0.64 -3.93 16 27 H 0.13 -0.33 7.96 -2.39 -0.02 -0.35 16 28 H -0.27 -0.74 7.11 99.48 0.71 -0.03 16 29 H -0.26 0.11 7.11 99.48 0.71 0.82 16 30 H 0.15 0.17 7.96 -2.91 -0.02 0.14 16 31 H 0.43 -3.25 8.65 -96.74 -0.84 -4.09 16 32 H 0.08 -0.27 7.75 -2.39 -0.02 -0.29 16 33 H 0.08 -0.58 7.86 -2.39 -0.02 -0.60 16 34 H 0.09 -0.54 6.16 -2.39 -0.01 -0.56 16 35 H 0.08 -0.50 8.14 -2.38 -0.02 -0.52 16 36 H 0.13 -0.24 8.05 -2.91 -0.02 -0.26 16 37 H 0.13 -0.21 8.06 -2.91 -0.02 -0.24 16 38 H 0.13 -0.21 8.06 -2.91 -0.02 -0.23 16 39 H 0.13 -0.32 8.06 -2.91 -0.02 -0.34 16 40 H 0.13 -0.48 6.73 -2.91 -0.02 -0.49 16 41 H 0.08 -0.34 8.14 -2.38 -0.02 -0.36 16 42 H 0.09 -0.40 7.60 -2.39 -0.02 -0.41 16 43 H 0.20 -1.38 8.00 -2.91 -0.02 -1.40 16 Total: 0.00 -21.22 383.70 -4.00 -25.22 By element: Atomic # 1 Polarization: -14.00 SS G_CDS: -0.39 Total: -14.40 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: 3.25 Total: 4.96 kcal Atomic # 7 Polarization: 4.47 SS G_CDS: -1.12 Total: 3.35 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: -6.36 Total: -22.58 kcal Atomic # 14 Polarization: -2.74 SS G_CDS: 2.12 Total: -0.62 kcal Atomic # 16 Polarization: 5.56 SS G_CDS: -1.49 Total: 4.07 kcal Total: -21.22 -4.00 -25.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_12130088_15065232.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.889 kcal (2) G-P(sol) polarization free energy of solvation -21.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds