Wall clock time and date at job start Fri Mar 5 2021 22:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33391 * 125.20468 * 2 1 4 4 C 1.50701 * 122.53743 * 359.96573 * 3 2 1 5 5 O 1.42898 * 109.47211 * 31.53792 * 4 3 2 6 6 Si 1.86296 * 109.47473 * 271.53421 * 4 3 2 7 7 C 1.38418 * 114.92370 * 180.20823 * 3 2 1 8 8 S 1.76206 * 122.54264 * 179.75923 * 7 3 2 9 9 O 1.42101 * 106.40304 * 154.20957 * 8 7 3 10 10 O 1.42097 * 106.39841 * 21.29214 * 8 7 3 11 11 N 1.65593 * 107.21658 * 267.75285 * 8 7 3 12 12 C 1.46503 * 120.00085 * 64.99710 * 11 8 7 13 13 C 1.53005 * 109.47079 * 164.99900 * 12 11 8 14 14 H 1.09003 * 112.84658 * 316.19719 * 13 12 11 15 15 C 1.53779 * 113.61470 * 87.50458 * 13 12 11 16 16 C 1.53780 * 87.08059 * 139.97924 * 15 13 12 17 17 H 1.09001 * 113.61096 * 89.11861 * 16 15 13 18 18 C 1.50698 * 113.61445 * 220.01538 * 16 15 13 19 19 C 1.38240 * 119.99867 * 37.23010 * 18 16 15 20 20 C 1.38230 * 119.99547 * 179.78896 * 19 18 16 21 21 C 1.38238 * 120.00331 * 0.43537 * 20 19 18 22 22 C 1.38227 * 119.99774 * 359.81728 * 21 20 19 23 23 C 1.38228 * 120.00331 * 359.97438 * 22 21 20 24 24 C 1.53775 * 87.08275 * 334.56946 * 16 15 13 25 25 C 1.33394 * 114.91946 * 359.48622 * 7 3 2 26 26 C 1.50696 * 125.20144 * 180.24885 * 25 7 3 27 27 S 1.75878 * 109.59238 * 0.27657 * 25 7 3 28 28 H 1.08996 * 109.47008 * 174.88860 * 1 2 3 29 29 H 1.08997 * 109.46988 * 294.89162 * 1 2 3 30 30 H 1.08993 * 109.47070 * 54.88974 * 1 2 3 31 31 H 1.09000 * 109.47375 * 151.53343 * 4 3 2 32 32 H 0.96705 * 113.99540 * 285.27763 * 5 4 3 33 33 H 1.48507 * 109.99984 * 58.68126 * 6 4 3 34 34 H 1.48496 * 110.00302 * 179.97438 * 6 4 3 35 35 H 0.97008 * 120.00066 * 244.99699 * 11 8 7 36 36 H 1.08999 * 109.46825 * 45.00075 * 12 11 8 37 37 H 1.09000 * 109.47396 * 284.99657 * 12 11 8 38 38 H 1.09000 * 113.61194 * 254.52812 * 15 13 12 39 39 H 1.08998 * 113.61502 * 25.34837 * 15 13 12 40 40 H 1.07995 * 119.99958 * 359.97438 * 19 18 16 41 41 H 1.08011 * 119.99543 * 180.27543 * 20 19 18 42 42 H 1.08002 * 119.99675 * 179.83710 * 21 20 19 43 43 H 1.08003 * 119.99967 * 179.97438 * 22 21 20 44 44 H 1.08001 * 120.00338 * 179.97438 * 23 22 21 45 45 H 1.09001 * 113.61149 * 270.88387 * 24 16 15 46 46 H 1.08996 * 113.61882 * 139.98026 * 24 16 15 47 47 H 1.08996 * 109.47002 * 90.00690 * 26 25 7 48 48 H 1.09001 * 109.47195 * 210.00542 * 26 25 7 49 49 H 1.09008 * 109.47450 * 330.00132 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 1.7052 2.4847 -0.0008 5 8 0.4617 2.4908 0.7033 6 14 1.4273 3.0411 -1.7568 7 6 3.6380 0.8429 -0.0046 8 16 4.8357 2.1353 -0.0117 9 8 6.0109 1.5965 0.5782 10 8 4.1786 3.2939 0.4834 11 7 5.2085 2.4494 -1.5942 12 6 4.1863 2.9890 -2.4944 13 6 4.8555 3.5328 -3.7583 14 1 5.7525 4.1144 -3.5454 15 6 5.0516 2.4738 -4.8559 16 6 4.6507 3.5610 -5.8668 17 1 5.4925 4.1496 -6.2317 18 6 3.7633 3.0568 -6.9755 19 6 2.7969 2.1050 -6.7086 20 6 1.9800 1.6458 -7.7247 21 6 2.1353 2.1316 -9.0095 22 6 3.1051 3.0794 -9.2774 23 6 3.9192 3.5419 -8.2605 24 6 3.8803 4.2339 -4.7187 25 6 3.9751 -0.4477 0.0026 26 6 5.3861 -0.9770 0.0050 27 16 2.5210 -1.4371 0.0079 28 1 -0.3633 -1.0235 -0.0916 29 1 -0.3633 0.4325 0.9322 30 1 -0.3633 0.5910 -0.8406 31 1 2.4034 3.1633 0.4892 32 1 -0.2708 2.0953 0.2113 33 1 0.5017 2.1059 -2.4455 34 1 0.8639 4.4149 -1.7713 35 1 6.1037 2.2761 -1.9253 36 1 3.6488 3.7938 -1.9928 37 1 3.4866 2.1983 -2.7653 38 1 6.0837 2.1394 -4.9605 39 1 4.3429 1.6477 -4.7972 40 1 2.6782 1.7226 -5.7056 41 1 1.2220 0.9054 -7.5152 42 1 1.4987 1.7707 -9.8039 43 1 3.2268 3.4587 -10.2813 44 1 4.6772 4.2822 -8.4700 45 1 2.8504 3.8897 -4.6233 46 1 3.9668 5.3204 -4.7125 47 1 5.7266 -1.0989 1.0332 48 1 5.4135 -1.9407 -0.5035 49 1 6.0387 -0.2742 -0.5130 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_40_12130088_15065288.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 22:42:50 Heat of formation + Delta-G solvation = -11.448652 kcal Electronic energy + Delta-G solvation = -33705.145696 eV Core-core repulsion = 29432.561697 eV Total energy + Delta-G solvation = -4272.584000 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 394.111 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.27815 -40.40016 -39.22049 -38.50420 -37.36953 -36.94572 -36.04898 -33.99398 -32.18770 -31.79488 -31.17270 -28.51403 -27.99664 -26.79180 -25.92649 -24.77158 -23.59898 -23.19508 -22.03951 -20.95427 -20.46725 -20.08149 -18.89151 -18.53015 -18.13788 -18.04674 -17.43343 -17.12179 -16.64078 -16.24549 -16.04434 -15.87302 -15.60727 -15.48741 -15.47612 -15.03186 -14.85238 -14.66059 -14.44055 -14.31676 -14.28906 -14.13590 -14.04369 -13.66711 -13.53588 -13.51469 -13.38976 -13.27206 -13.20723 -13.03649 -12.74960 -12.72571 -12.62047 -12.42833 -12.33293 -12.12467 -11.70883 -11.62813 -11.50292 -11.37142 -11.21526 -10.88005 -10.71782 -10.00228 -9.84034 -9.58125 -9.30055 -5.02338 -0.78589 -0.41326 0.38666 0.41285 0.48065 0.69672 0.77847 1.28872 1.45609 1.89051 1.98211 2.63142 2.81193 3.16910 3.29058 3.36005 3.37811 3.46927 3.49787 3.72607 3.83740 3.87635 3.93235 3.96882 4.04304 4.07715 4.09695 4.16330 4.19554 4.24234 4.26860 4.34012 4.43212 4.48585 4.54732 4.58890 4.61048 4.65361 4.72046 4.75634 4.77967 4.79529 4.90712 4.93487 5.02075 5.08233 5.09764 5.13710 5.30561 5.32658 5.55897 5.62109 5.70899 5.78605 6.08191 6.36714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.189 4.189 3 C -0.061 4.061 4 C -0.094 4.094 5 O -0.520 6.520 6 Si 0.608 3.392 7 C -0.687 4.687 8 S 2.703 3.297 9 O -0.947 6.947 10 O -0.945 6.945 11 N -1.109 6.109 12 C 0.123 3.877 13 C -0.115 4.115 14 H 0.111 0.889 15 C -0.131 4.131 16 C -0.073 4.073 17 H 0.102 0.898 18 C -0.071 4.071 19 C -0.119 4.119 20 C -0.118 4.118 21 C -0.125 4.125 22 C -0.118 4.118 23 C -0.116 4.116 24 C -0.127 4.127 25 C -0.045 4.045 26 C -0.111 4.111 27 S 0.157 5.843 28 H 0.074 0.926 29 H 0.094 0.906 30 H 0.073 0.927 31 H 0.173 0.827 32 H 0.364 0.636 33 H -0.242 1.242 34 H -0.230 1.230 35 H 0.424 0.576 36 H 0.089 0.911 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.090 0.910 40 H 0.121 0.879 41 H 0.120 0.880 42 H 0.120 0.880 43 H 0.121 0.879 44 H 0.121 0.879 45 H 0.088 0.912 46 H 0.080 0.920 47 H 0.101 0.899 48 H 0.083 0.917 49 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.318 -2.193 -5.805 6.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.307 4.307 3 C -0.071 4.071 4 C -0.206 4.206 5 O -0.328 6.328 6 Si 0.506 3.494 7 C -0.786 4.786 8 S 2.791 3.209 9 O -0.937 6.937 10 O -0.934 6.934 11 N -0.870 5.870 12 C -0.002 4.002 13 C -0.134 4.134 14 H 0.129 0.871 15 C -0.168 4.168 16 C -0.091 4.091 17 H 0.120 0.880 18 C -0.071 4.071 19 C -0.137 4.137 20 C -0.136 4.136 21 C -0.143 4.143 22 C -0.136 4.136 23 C -0.134 4.134 24 C -0.165 4.165 25 C -0.166 4.166 26 C -0.170 4.170 27 S 0.423 5.577 28 H 0.093 0.907 29 H 0.112 0.888 30 H 0.092 0.908 31 H 0.190 0.810 32 H 0.214 0.786 33 H -0.166 1.166 34 H -0.153 1.153 35 H 0.260 0.740 36 H 0.106 0.894 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.108 0.892 40 H 0.139 0.861 41 H 0.138 0.862 42 H 0.138 0.862 43 H 0.139 0.861 44 H 0.139 0.861 45 H 0.107 0.893 46 H 0.099 0.901 47 H 0.120 0.880 48 H 0.101 0.899 49 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.916 -2.789 -5.141 5.920 hybrid contribution -1.046 0.187 -0.023 1.062 sum -0.130 -2.602 -5.163 5.783 Atomic orbital electron populations 1.20591 0.87863 1.03625 1.03371 1.24183 1.00005 0.94923 1.11588 1.18571 0.90480 0.96948 1.01140 1.25694 0.89105 0.95834 1.09930 1.86732 1.17895 1.83878 1.44344 0.95565 0.92214 0.82783 0.78815 1.29343 1.11472 1.13405 1.24423 1.01683 0.73140 0.73644 0.72401 1.93620 1.45939 1.79884 1.74286 1.93392 1.75268 1.47027 1.77744 1.55486 1.21082 1.80550 1.29924 1.21388 0.89143 0.98269 0.91380 1.22788 1.00244 0.98653 0.91748 0.87132 1.23251 1.02785 0.96576 0.94230 1.21482 0.97661 0.97974 0.92013 0.88014 1.19700 0.96532 0.96611 0.94230 1.21014 0.95885 0.97548 0.99275 1.21170 0.99303 0.99985 0.93187 1.21192 0.98554 0.97588 0.96931 1.21190 0.95792 0.97316 0.99284 1.21087 0.99693 1.00131 0.92497 1.23123 0.98639 1.00856 0.93878 1.24549 1.00692 0.94965 0.96380 1.20903 0.88114 1.02484 1.05455 1.84360 0.95189 1.08480 1.69629 0.90684 0.88770 0.90829 0.81048 0.78575 1.16610 1.15285 0.74042 0.89358 0.90653 0.90546 0.89172 0.86070 0.86155 0.86161 0.86062 0.86060 0.89337 0.90090 0.88047 0.89857 0.88677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.06 8.27 36.01 0.30 0.36 16 2 C -0.19 -0.26 6.36 -36.00 -0.23 -0.49 16 3 C -0.06 -0.13 4.09 -106.25 -0.43 -0.56 16 4 C -0.09 -0.25 2.38 36.01 0.09 -0.17 16 5 O -0.52 -1.70 11.76 -35.23 -0.41 -2.11 16 6 Si 0.61 0.38 24.72 -169.99 -4.20 -3.82 16 7 C -0.69 -0.92 5.86 -41.21 -0.24 -1.16 16 8 S 2.70 2.62 5.39 -107.50 -0.58 2.04 16 9 O -0.95 -2.66 15.21 -57.17 -0.87 -3.53 16 10 O -0.94 -3.20 13.74 -57.17 -0.79 -3.98 16 11 N -1.11 3.15 6.00 -10.61 -0.06 3.09 16 12 C 0.12 -0.39 3.69 -4.04 -0.01 -0.40 16 13 C -0.11 0.49 3.78 -89.81 -0.34 0.15 16 14 H 0.11 -0.57 8.14 -51.93 -0.42 -0.99 16 15 C -0.13 0.52 7.00 -25.92 -0.18 0.34 16 16 C -0.07 0.22 3.98 -90.96 -0.36 -0.15 16 17 H 0.10 -0.36 8.10 -51.93 -0.42 -0.78 16 18 C -0.07 0.06 5.29 -104.62 -0.55 -0.49 16 19 C -0.12 0.09 8.63 -39.58 -0.34 -0.26 16 20 C -0.12 0.02 10.05 -39.58 -0.40 -0.38 16 21 C -0.12 0.00 10.05 -39.59 -0.40 -0.40 16 22 C -0.12 0.01 10.05 -39.59 -0.40 -0.39 16 23 C -0.12 0.04 9.71 -39.59 -0.38 -0.34 16 24 C -0.13 0.44 7.11 -25.92 -0.18 0.25 16 25 C -0.04 -0.02 6.49 -36.00 -0.23 -0.25 16 26 C -0.11 0.15 9.11 36.00 0.33 0.47 16 27 S 0.16 0.04 23.31 -107.50 -2.51 -2.47 16 28 H 0.07 -0.13 8.14 -51.93 -0.42 -0.55 16 29 H 0.09 -0.07 6.74 -51.93 -0.35 -0.42 16 30 H 0.07 -0.11 6.59 -51.93 -0.34 -0.45 16 31 H 0.17 0.65 4.38 -52.14 -0.23 0.42 16 32 H 0.36 0.06 4.95 45.56 0.23 0.29 16 33 H -0.24 -0.29 7.01 56.52 0.40 0.10 16 34 H -0.23 -0.62 7.11 56.52 0.40 -0.22 16 35 H 0.42 -2.18 8.65 -34.47 -0.30 -2.48 16 36 H 0.09 -0.25 4.90 -51.93 -0.25 -0.51 16 37 H 0.08 -0.32 5.46 -51.93 -0.28 -0.60 16 38 H 0.08 -0.33 8.14 -51.93 -0.42 -0.76 16 39 H 0.09 -0.36 6.06 -51.93 -0.31 -0.68 16 40 H 0.12 -0.29 6.64 -52.49 -0.35 -0.64 16 41 H 0.12 -0.19 8.06 -52.48 -0.42 -0.61 16 42 H 0.12 -0.16 8.06 -52.49 -0.42 -0.59 16 43 H 0.12 -0.18 8.06 -52.48 -0.42 -0.61 16 44 H 0.12 -0.23 8.06 -52.49 -0.42 -0.65 16 45 H 0.09 -0.30 7.69 -51.93 -0.40 -0.70 16 46 H 0.08 -0.30 8.14 -51.93 -0.42 -0.72 16 47 H 0.10 -0.11 8.14 -51.93 -0.42 -0.53 16 48 H 0.08 -0.27 8.14 -51.93 -0.42 -0.69 16 49 H 0.09 -0.19 6.35 -51.92 -0.33 -0.52 16 LS Contribution 393.71 15.07 5.93 5.93 Total: 0.00 -8.36 393.71 -14.24 -22.61 By element: Atomic # 1 Polarization: -7.11 SS G_CDS: -6.77 Total: -13.88 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: -3.98 Total: -3.87 kcal Atomic # 7 Polarization: 3.15 SS G_CDS: -0.06 Total: 3.09 kcal Atomic # 8 Polarization: -7.56 SS G_CDS: -2.07 Total: -9.63 kcal Atomic # 14 Polarization: 0.38 SS G_CDS: -4.20 Total: -3.82 kcal Atomic # 16 Polarization: 2.66 SS G_CDS: -3.09 Total: -0.42 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -8.36 -14.24 -22.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_12130088_15065288.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.158 kcal (2) G-P(sol) polarization free energy of solvation -8.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds