Wall clock time and date at job start Fri Mar 5 2021 22:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33391 * 125.20468 * 2 1 4 4 C 1.50701 * 122.53743 * 359.96573 * 3 2 1 5 5 O 1.42898 * 109.47211 * 31.53792 * 4 3 2 6 6 Si 1.86296 * 109.47473 * 271.53421 * 4 3 2 7 7 C 1.38418 * 114.92370 * 180.20823 * 3 2 1 8 8 S 1.76206 * 122.54264 * 179.75923 * 7 3 2 9 9 O 1.42101 * 106.40304 * 154.20957 * 8 7 3 10 10 O 1.42097 * 106.39841 * 21.29214 * 8 7 3 11 11 N 1.65593 * 107.21658 * 267.75285 * 8 7 3 12 12 C 1.46503 * 120.00085 * 64.99710 * 11 8 7 13 13 C 1.53005 * 109.47079 * 164.99900 * 12 11 8 14 14 H 1.09003 * 112.84658 * 316.19719 * 13 12 11 15 15 C 1.53779 * 113.61470 * 87.50458 * 13 12 11 16 16 C 1.53780 * 87.08059 * 139.97924 * 15 13 12 17 17 H 1.09001 * 113.61096 * 89.11861 * 16 15 13 18 18 C 1.50698 * 113.61445 * 220.01538 * 16 15 13 19 19 C 1.38240 * 119.99867 * 37.23010 * 18 16 15 20 20 C 1.38230 * 119.99547 * 179.78896 * 19 18 16 21 21 C 1.38238 * 120.00331 * 0.43537 * 20 19 18 22 22 C 1.38227 * 119.99774 * 359.81728 * 21 20 19 23 23 C 1.38228 * 120.00331 * 359.97438 * 22 21 20 24 24 C 1.53775 * 87.08275 * 334.56946 * 16 15 13 25 25 C 1.33394 * 114.91946 * 359.48622 * 7 3 2 26 26 C 1.50696 * 125.20144 * 180.24885 * 25 7 3 27 27 S 1.75878 * 109.59238 * 0.27657 * 25 7 3 28 28 H 1.08996 * 109.47008 * 174.88860 * 1 2 3 29 29 H 1.08997 * 109.46988 * 294.89162 * 1 2 3 30 30 H 1.08993 * 109.47070 * 54.88974 * 1 2 3 31 31 H 1.09000 * 109.47375 * 151.53343 * 4 3 2 32 32 H 0.96705 * 113.99540 * 285.27763 * 5 4 3 33 33 H 1.48507 * 109.99984 * 58.68126 * 6 4 3 34 34 H 1.48496 * 110.00302 * 179.97438 * 6 4 3 35 35 H 0.97008 * 120.00066 * 244.99699 * 11 8 7 36 36 H 1.08999 * 109.46825 * 45.00075 * 12 11 8 37 37 H 1.09000 * 109.47396 * 284.99657 * 12 11 8 38 38 H 1.09000 * 113.61194 * 254.52812 * 15 13 12 39 39 H 1.08998 * 113.61502 * 25.34837 * 15 13 12 40 40 H 1.07995 * 119.99958 * 359.97438 * 19 18 16 41 41 H 1.08011 * 119.99543 * 180.27543 * 20 19 18 42 42 H 1.08002 * 119.99675 * 179.83710 * 21 20 19 43 43 H 1.08003 * 119.99967 * 179.97438 * 22 21 20 44 44 H 1.08001 * 120.00338 * 179.97438 * 23 22 21 45 45 H 1.09001 * 113.61149 * 270.88387 * 24 16 15 46 46 H 1.08996 * 113.61882 * 139.98026 * 24 16 15 47 47 H 1.08996 * 109.47002 * 90.00690 * 26 25 7 48 48 H 1.09001 * 109.47195 * 210.00542 * 26 25 7 49 49 H 1.09008 * 109.47450 * 330.00132 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 1.7052 2.4847 -0.0008 5 8 0.4617 2.4908 0.7033 6 14 1.4273 3.0411 -1.7568 7 6 3.6380 0.8429 -0.0046 8 16 4.8357 2.1353 -0.0117 9 8 6.0109 1.5965 0.5782 10 8 4.1786 3.2939 0.4834 11 7 5.2085 2.4494 -1.5942 12 6 4.1863 2.9890 -2.4944 13 6 4.8555 3.5328 -3.7583 14 1 5.7525 4.1144 -3.5454 15 6 5.0516 2.4738 -4.8559 16 6 4.6507 3.5610 -5.8668 17 1 5.4925 4.1496 -6.2317 18 6 3.7633 3.0568 -6.9755 19 6 2.7969 2.1050 -6.7086 20 6 1.9800 1.6458 -7.7247 21 6 2.1353 2.1316 -9.0095 22 6 3.1051 3.0794 -9.2774 23 6 3.9192 3.5419 -8.2605 24 6 3.8803 4.2339 -4.7187 25 6 3.9751 -0.4477 0.0026 26 6 5.3861 -0.9770 0.0050 27 16 2.5210 -1.4371 0.0079 28 1 -0.3633 -1.0235 -0.0916 29 1 -0.3633 0.4325 0.9322 30 1 -0.3633 0.5910 -0.8406 31 1 2.4034 3.1633 0.4892 32 1 -0.2708 2.0953 0.2113 33 1 0.5017 2.1059 -2.4455 34 1 0.8639 4.4149 -1.7713 35 1 6.1037 2.2761 -1.9253 36 1 3.6488 3.7938 -1.9928 37 1 3.4866 2.1983 -2.7653 38 1 6.0837 2.1394 -4.9605 39 1 4.3429 1.6477 -4.7972 40 1 2.6782 1.7226 -5.7056 41 1 1.2220 0.9054 -7.5152 42 1 1.4987 1.7707 -9.8039 43 1 3.2268 3.4587 -10.2813 44 1 4.6772 4.2822 -8.4700 45 1 2.8504 3.8897 -4.6233 46 1 3.9668 5.3204 -4.7125 47 1 5.7266 -1.0989 1.0332 48 1 5.4135 -1.9407 -0.5035 49 1 6.0387 -0.2742 -0.5130 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_40_12130088_15065288.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 22:42:49 Heat of formation + Delta-G solvation = -9.094729 kcal Electronic energy + Delta-G solvation = -33705.043622 eV Core-core repulsion = 29432.561697 eV Total energy + Delta-G solvation = -4272.481926 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 394.111 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.05094 -40.46495 -39.05338 -38.61575 -37.49754 -37.08404 -35.87791 -33.99007 -32.04728 -31.68613 -31.13911 -28.33034 -28.02653 -26.46916 -25.93241 -24.59153 -23.48314 -23.22287 -21.85443 -20.97924 -20.39152 -19.93503 -18.88116 -18.54136 -18.22794 -17.95876 -17.37605 -17.09409 -16.46096 -16.16451 -15.97666 -15.84630 -15.59725 -15.52029 -15.46606 -14.86374 -14.71158 -14.62035 -14.38372 -14.29196 -14.18224 -14.12668 -13.96512 -13.60755 -13.55822 -13.39904 -13.36197 -13.19820 -13.08863 -13.03148 -12.75453 -12.65586 -12.56896 -12.45488 -12.24242 -11.95938 -11.72230 -11.43315 -11.35836 -11.21531 -11.07281 -10.93553 -10.53035 -10.01134 -9.76038 -9.46656 -9.34231 -5.08528 -0.80990 -0.44002 0.38401 0.50772 0.55967 0.65038 0.73066 1.18238 1.37806 1.80768 2.00382 2.59574 2.91226 3.14163 3.22722 3.48166 3.62032 3.67596 3.69096 3.76166 3.98811 4.04789 4.12654 4.14438 4.15307 4.20903 4.25165 4.31006 4.33393 4.42009 4.46553 4.52574 4.57416 4.62620 4.66701 4.68912 4.72703 4.77733 4.83480 4.97092 4.97585 5.04637 5.08235 5.13161 5.19886 5.23362 5.23615 5.26832 5.35670 5.60150 5.66589 5.70561 5.86523 6.10430 6.19523 6.31604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.203 4.203 3 C -0.074 4.074 4 C -0.114 4.114 5 O -0.540 6.540 6 Si 0.672 3.328 7 C -0.698 4.698 8 S 2.712 3.288 9 O -0.969 6.969 10 O -0.973 6.973 11 N -1.092 6.092 12 C 0.111 3.889 13 C -0.104 4.104 14 H 0.123 0.877 15 C -0.128 4.128 16 C -0.075 4.075 17 H 0.108 0.892 18 C -0.074 4.074 19 C -0.128 4.128 20 C -0.132 4.132 21 C -0.142 4.142 22 C -0.133 4.133 23 C -0.131 4.131 24 C -0.132 4.132 25 C -0.046 4.046 26 C -0.118 4.118 27 S 0.175 5.825 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.158 0.842 32 H 0.375 0.625 33 H -0.244 1.244 34 H -0.263 1.263 35 H 0.436 0.564 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.137 0.863 41 H 0.130 0.870 42 H 0.128 0.872 43 H 0.129 0.871 44 H 0.132 0.868 45 H 0.087 0.913 46 H 0.083 0.917 47 H 0.098 0.902 48 H 0.104 0.896 49 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.892 -3.014 -6.462 7.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.321 4.321 3 C -0.085 4.085 4 C -0.225 4.225 5 O -0.350 6.350 6 Si 0.571 3.429 7 C -0.797 4.797 8 S 2.801 3.199 9 O -0.959 6.959 10 O -0.963 6.963 11 N -0.857 5.857 12 C -0.014 4.014 13 C -0.123 4.123 14 H 0.141 0.859 15 C -0.166 4.166 16 C -0.093 4.093 17 H 0.126 0.874 18 C -0.074 4.074 19 C -0.146 4.146 20 C -0.150 4.150 21 C -0.160 4.160 22 C -0.151 4.151 23 C -0.149 4.149 24 C -0.170 4.170 25 C -0.167 4.167 26 C -0.176 4.176 27 S 0.441 5.559 28 H 0.106 0.894 29 H 0.111 0.889 30 H 0.100 0.900 31 H 0.174 0.826 32 H 0.227 0.773 33 H -0.169 1.169 34 H -0.188 1.188 35 H 0.275 0.725 36 H 0.102 0.898 37 H 0.107 0.893 38 H 0.103 0.897 39 H 0.111 0.889 40 H 0.155 0.845 41 H 0.148 0.852 42 H 0.146 0.854 43 H 0.147 0.853 44 H 0.150 0.850 45 H 0.106 0.894 46 H 0.102 0.898 47 H 0.117 0.883 48 H 0.123 0.877 49 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 1.509 -3.626 -5.786 6.993 hybrid contribution -1.237 0.447 0.200 1.330 sum 0.272 -3.179 -5.586 6.433 Atomic orbital electron populations 1.20672 0.86864 1.04611 1.03663 1.24499 1.01049 0.95301 1.11216 1.18586 0.90964 0.96784 1.02138 1.25919 0.88724 0.96330 1.11487 1.86686 1.18593 1.84237 1.45457 0.94764 0.91173 0.80025 0.76955 1.29327 1.11223 1.13823 1.25368 1.01165 0.72472 0.73111 0.73116 1.93585 1.46703 1.80139 1.75482 1.93366 1.75749 1.48265 1.78914 1.55129 1.21870 1.80136 1.28555 1.21619 0.89346 0.98775 0.91642 1.22748 1.00316 0.98529 0.90732 0.85870 1.23270 1.03375 0.96393 0.93516 1.21542 0.97599 0.98610 0.91581 0.87389 1.19963 0.96595 0.96249 0.94616 1.21271 0.95786 0.97607 0.99938 1.21418 0.99837 1.00401 0.93359 1.21403 0.99048 0.98050 0.97504 1.21415 0.96062 0.97589 0.99985 1.21341 1.00076 1.00599 0.92852 1.23184 0.98784 1.01157 0.93868 1.24821 1.01612 0.94782 0.95477 1.21059 0.87117 1.03781 1.05671 1.84250 0.94685 1.07697 1.69242 0.89439 0.88932 0.89982 0.82553 0.77318 1.16865 1.18841 0.72469 0.89756 0.89336 0.89698 0.88913 0.84516 0.85184 0.85450 0.85268 0.85019 0.89418 0.89805 0.88342 0.87714 0.87983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.14 8.27 71.24 0.59 0.73 16 2 C -0.20 -0.55 6.36 24.59 0.16 -0.39 16 3 C -0.07 -0.35 4.09 -20.92 -0.09 -0.43 16 4 C -0.11 -0.73 2.38 71.24 0.17 -0.56 16 5 O -0.54 -4.16 11.76 -148.98 -1.75 -5.91 16 6 Si 0.67 1.04 24.72 68.60 1.70 2.73 16 7 C -0.70 -2.03 5.86 21.22 0.12 -1.90 16 8 S 2.71 6.49 5.39 -56.49 -0.30 6.18 16 9 O -0.97 -5.81 15.21 -128.00 -1.95 -7.75 16 10 O -0.97 -7.86 13.74 -128.00 -1.76 -9.61 16 11 N -1.09 6.83 6.00 -187.48 -1.12 5.71 16 12 C 0.11 -0.77 3.69 86.38 0.32 -0.46 16 13 C -0.10 1.02 3.78 -10.27 -0.04 0.98 16 14 H 0.12 -1.49 8.14 -2.39 -0.02 -1.51 16 15 C -0.13 1.23 7.00 31.12 0.22 1.44 16 16 C -0.08 0.52 3.98 -11.02 -0.04 0.48 16 17 H 0.11 -0.88 8.10 -2.39 -0.02 -0.90 16 18 C -0.07 0.16 5.29 -19.86 -0.11 0.06 16 19 C -0.13 0.23 8.63 22.27 0.19 0.43 16 20 C -0.13 0.03 10.05 22.27 0.22 0.25 16 21 C -0.14 -0.09 10.05 22.27 0.22 0.13 16 22 C -0.13 -0.05 10.05 22.26 0.22 0.17 16 23 C -0.13 0.09 9.71 22.27 0.22 0.30 16 24 C -0.13 1.02 7.11 31.12 0.22 1.24 16 25 C -0.05 -0.03 6.49 24.59 0.16 0.13 16 26 C -0.12 0.40 9.11 71.23 0.65 1.04 16 27 S 0.17 -0.01 23.31 -56.49 -1.32 -1.33 16 28 H 0.09 -0.36 8.14 -2.39 -0.02 -0.38 16 29 H 0.09 -0.10 6.74 -2.39 -0.02 -0.12 16 30 H 0.08 -0.27 6.59 -2.39 -0.02 -0.29 16 31 H 0.16 1.47 4.38 -5.73 -0.03 1.45 16 32 H 0.38 0.43 4.95 -74.05 -0.37 0.06 16 33 H -0.24 -0.42 7.01 99.48 0.70 0.28 16 34 H -0.26 -1.75 7.11 99.48 0.71 -1.04 16 35 H 0.44 -4.98 8.65 -96.74 -0.84 -5.82 16 36 H 0.08 -0.49 4.90 -2.39 -0.01 -0.50 16 37 H 0.09 -0.84 5.46 -2.39 -0.01 -0.85 16 38 H 0.08 -0.91 8.14 -2.39 -0.02 -0.93 16 39 H 0.09 -0.91 6.06 -2.39 -0.01 -0.92 16 40 H 0.14 -0.80 6.64 -2.91 -0.02 -0.82 16 41 H 0.13 -0.42 8.06 -2.91 -0.02 -0.44 16 42 H 0.13 -0.26 8.06 -2.91 -0.02 -0.28 16 43 H 0.13 -0.31 8.06 -2.91 -0.02 -0.33 16 44 H 0.13 -0.50 8.06 -2.91 -0.02 -0.52 16 45 H 0.09 -0.65 7.69 -2.39 -0.02 -0.67 16 46 H 0.08 -0.68 8.14 -2.39 -0.02 -0.70 16 47 H 0.10 -0.24 8.14 -2.39 -0.02 -0.26 16 48 H 0.10 -0.83 8.14 -2.39 -0.02 -0.85 16 49 H 0.10 -0.49 6.35 -2.38 -0.02 -0.50 16 Total: 0.00 -19.92 393.71 -3.27 -23.19 By element: Atomic # 1 Polarization: -16.67 SS G_CDS: -0.18 Total: -16.85 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: 3.41 Total: 3.64 kcal Atomic # 7 Polarization: 6.83 SS G_CDS: -1.12 Total: 5.71 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: -5.46 Total: -23.28 kcal Atomic # 14 Polarization: 1.04 SS G_CDS: 1.70 Total: 2.73 kcal Atomic # 16 Polarization: 6.47 SS G_CDS: -1.62 Total: 4.85 kcal Total: -19.92 -3.27 -23.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_12130088_15065288.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.098 kcal (2) G-P(sol) polarization free energy of solvation -19.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds