Wall clock time and date at job start Fri Mar 5 2021 22:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86295 * 109.47395 * 2 1 4 4 C 1.50700 * 109.47262 * 120.00366 * 2 1 3 5 5 C 1.38209 * 120.00184 * 76.25571 * 4 2 1 6 6 S 1.76204 * 120.00013 * 359.97438 * 5 4 2 7 7 O 1.42099 * 106.40021 * 177.44753 * 6 5 4 8 8 O 1.42101 * 106.40058 * 310.36778 * 6 5 4 9 9 N 1.65596 * 107.21659 * 63.90725 * 6 5 4 10 10 C 1.46498 * 120.00534 * 63.40877 * 9 6 5 11 11 C 1.52995 * 109.47477 * 164.93519 * 10 9 6 12 12 H 1.08998 * 112.85165 * 316.19905 * 11 10 9 13 13 C 1.53784 * 113.61427 * 87.50384 * 11 10 9 14 14 C 1.53787 * 87.08250 * 139.97969 * 13 11 10 15 15 H 1.09000 * 113.60811 * 89.11706 * 14 13 11 16 16 C 1.50696 * 113.68871 * 220.00617 * 14 13 11 17 17 C 1.38231 * 120.00140 * 37.27023 * 16 14 13 18 18 C 1.38240 * 120.00222 * 179.78652 * 17 16 14 19 19 C 1.38238 * 119.99668 * 0.45848 * 18 17 16 20 20 C 1.38243 * 119.99875 * 359.76807 * 19 18 17 21 21 C 1.38232 * 120.00137 * 0.02562 * 20 19 18 22 22 C 1.53782 * 87.08047 * 334.56837 * 14 13 11 23 23 C 1.38261 * 120.00160 * 180.02562 * 5 4 2 24 24 C 1.38215 * 119.99707 * 359.97438 * 23 5 4 25 25 C 1.38260 * 119.99898 * 359.97438 * 24 23 5 26 26 C 1.38209 * 120.00137 * 359.80930 * 25 24 23 27 27 H 0.96705 * 113.99472 * 54.98339 * 1 2 3 28 28 H 1.08998 * 109.46939 * 239.99706 * 2 1 3 29 29 H 1.48500 * 109.99956 * 59.99940 * 3 2 1 30 30 H 1.48500 * 110.00158 * 181.32225 * 3 2 1 31 31 H 0.97005 * 119.99672 * 243.40201 * 9 6 5 32 32 H 1.09004 * 109.46969 * 284.93845 * 10 9 6 33 33 H 1.09000 * 109.46727 * 44.93512 * 10 9 6 34 34 H 1.08993 * 113.61499 * 254.52899 * 13 11 10 35 35 H 1.08997 * 113.61033 * 25.43409 * 13 11 10 36 36 H 1.08004 * 120.00131 * 359.97438 * 17 16 14 37 37 H 1.07993 * 120.00192 * 180.24874 * 18 17 16 38 38 H 1.07997 * 119.99760 * 179.79749 * 19 18 17 39 39 H 1.07999 * 119.99527 * 180.02562 * 20 19 18 40 40 H 1.08000 * 120.00290 * 179.97438 * 21 20 19 41 41 H 1.09001 * 113.61642 * 270.88543 * 22 14 13 42 42 H 1.09000 * 113.69064 * 139.99215 * 22 14 13 43 43 H 1.07997 * 119.99710 * 179.97438 * 23 5 4 44 44 H 1.07994 * 119.99985 * 179.97438 * 24 23 5 45 45 H 1.08005 * 119.99729 * 179.97438 * 25 24 23 46 46 H 1.08000 * 120.00345 * 180.23004 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7105 1.2304 5 6 1.8937 -2.0905 1.2954 6 16 1.2575 -3.0193 -0.0602 7 8 1.4092 -4.3892 0.2857 8 8 0.0055 -2.4359 -0.3939 9 7 2.2582 -2.7495 -1.3517 10 6 3.6590 -3.1746 -1.2946 11 6 4.2543 -3.1602 -2.7039 12 1 3.5867 -3.5914 -3.4498 13 6 4.8388 -1.7975 -3.1118 14 6 5.9903 -2.5766 -3.7693 15 1 5.7975 -2.8471 -4.8074 16 6 7.3421 -1.9407 -3.5715 17 6 7.6483 -1.3270 -2.3714 18 6 8.8900 -0.7475 -2.1884 19 6 9.8220 -0.7734 -3.2090 20 6 9.5140 -1.3830 -4.4109 21 6 8.2739 -1.9662 -4.5924 22 6 5.6897 -3.7079 -2.7719 23 6 2.3541 -2.7423 2.4244 24 6 2.8526 -2.0138 3.4879 25 6 2.8913 -0.6333 3.4225 26 6 2.4351 0.0180 2.2920 27 1 -0.3933 0.5070 -0.7236 28 1 1.7923 -0.5139 -0.8899 29 1 1.5616 2.4678 1.2085 30 1 3.5347 1.7702 -0.0322 31 1 1.9168 -2.3100 -2.1463 32 1 4.2200 -2.4921 -0.6561 33 1 3.7160 -4.1837 -0.8864 34 1 4.2189 -1.2518 -3.8230 35 1 5.1525 -1.1862 -2.2657 36 1 6.9186 -1.3029 -1.5755 37 1 9.1307 -0.2716 -1.2493 38 1 10.7908 -0.3178 -3.0672 39 1 10.2423 -1.4036 -5.2081 40 1 8.0331 -2.4421 -5.5315 41 1 6.2360 -3.6187 -1.8329 42 1 5.7565 -4.7049 -3.2074 43 1 2.3242 -3.8207 2.4753 44 1 3.2118 -2.5228 4.3700 45 1 3.2804 -0.0640 4.2537 46 1 2.4688 1.0962 2.2394 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_40_12130088_2726874.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Mar 5 2021 22:42:54 Heat of formation + Delta-G solvation = -15.088308 kcal Electronic energy + Delta-G solvation = -30427.173224 eV Core-core repulsion = 26376.354388 eV Total energy + Delta-G solvation = -4050.818835 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 360.123 amu Computer time = 2.18 seconds Orbital eigenvalues (eV) -41.24326 -40.70222 -39.17709 -38.27826 -37.38334 -36.68470 -35.93286 -33.02002 -32.48538 -32.16927 -31.79779 -28.37791 -26.96315 -26.77375 -24.69183 -24.49059 -23.59171 -22.73593 -21.96442 -20.69133 -20.15641 -19.04065 -18.48375 -18.39185 -17.91813 -17.48558 -17.07710 -16.83149 -16.44394 -16.16178 -15.97523 -15.67547 -15.60944 -15.22126 -15.03417 -14.87048 -14.79477 -14.31546 -14.15113 -14.08807 -13.95297 -13.55458 -13.54025 -13.43881 -13.17423 -13.11902 -12.90883 -12.79517 -12.68918 -12.40834 -12.16363 -12.09997 -12.07276 -11.73472 -11.61490 -11.47694 -11.18975 -10.69592 -10.53834 -10.29969 -10.15170 -9.84665 -9.58473 -5.13516 -0.61351 -0.29549 0.02967 0.40779 0.47363 1.06580 1.48301 1.77662 1.94229 2.30909 2.78101 2.80866 3.15826 3.33748 3.43902 3.45140 3.50387 3.62556 3.77334 3.85288 3.87150 3.90842 3.94923 4.00525 4.06690 4.10209 4.15048 4.19913 4.26354 4.30956 4.41846 4.47348 4.53878 4.59551 4.62121 4.66546 4.69246 4.75771 4.81965 4.91203 4.96414 5.02714 5.05462 5.08037 5.14093 5.16288 5.34700 5.55305 5.61299 5.61717 5.71050 5.87358 6.07556 6.65270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.512 6.512 2 C -0.107 4.107 3 Si 0.692 3.308 4 C 0.030 3.970 5 C -0.656 4.656 6 S 2.688 3.312 7 O -0.959 6.959 8 O -0.924 6.924 9 N -1.117 6.117 10 C 0.125 3.875 11 C -0.118 4.118 12 H 0.104 0.896 13 C -0.131 4.131 14 C -0.074 4.074 15 H 0.100 0.900 16 C -0.070 4.070 17 C -0.118 4.118 18 C -0.118 4.118 19 C -0.125 4.125 20 C -0.118 4.118 21 C -0.117 4.117 22 C -0.122 4.122 23 C -0.021 4.021 24 C -0.134 4.134 25 C -0.058 4.058 26 C -0.146 4.146 27 H 0.382 0.618 28 H 0.073 0.927 29 H -0.246 1.246 30 H -0.250 1.250 31 H 0.419 0.581 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.122 0.878 40 H 0.121 0.879 41 H 0.087 0.913 42 H 0.076 0.924 43 H 0.148 0.852 44 H 0.138 0.862 45 H 0.136 0.864 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.965 3.355 -2.601 5.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.318 6.318 2 C -0.218 4.218 3 Si 0.592 3.408 4 C 0.029 3.971 5 C -0.741 4.741 6 S 2.776 3.224 7 O -0.949 6.949 8 O -0.913 6.913 9 N -0.878 5.878 10 C -0.001 4.001 11 C -0.138 4.138 12 H 0.122 0.878 13 C -0.168 4.168 14 C -0.092 4.092 15 H 0.118 0.882 16 C -0.070 4.070 17 C -0.136 4.136 18 C -0.136 4.136 19 C -0.143 4.143 20 C -0.136 4.136 21 C -0.135 4.135 22 C -0.160 4.160 23 C -0.040 4.040 24 C -0.152 4.152 25 C -0.076 4.076 26 C -0.164 4.164 27 H 0.230 0.770 28 H 0.091 0.909 29 H -0.170 1.170 30 H -0.175 1.175 31 H 0.255 0.745 32 H 0.083 0.917 33 H 0.102 0.898 34 H 0.093 0.907 35 H 0.105 0.895 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.139 0.861 39 H 0.140 0.860 40 H 0.139 0.861 41 H 0.105 0.895 42 H 0.094 0.906 43 H 0.166 0.834 44 H 0.156 0.844 45 H 0.153 0.847 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.872 2.968 -1.454 5.091 hybrid contribution 0.573 0.252 0.365 0.725 sum 4.446 3.219 -1.088 5.596 Atomic orbital electron populations 1.86704 1.14272 1.76606 1.54187 1.24985 0.88509 1.11830 0.96476 0.94965 0.80970 0.77507 0.87366 1.18898 0.92763 0.91579 0.93906 1.30872 1.18083 1.06055 1.19121 1.02250 0.73319 0.73734 0.73083 1.93587 1.86204 1.31398 1.83746 1.93708 1.37291 1.78006 1.82335 1.55634 1.22840 1.76997 1.32376 1.21369 0.80084 1.00569 0.98108 1.22767 0.96609 0.98084 0.96315 0.87789 1.23229 0.96728 0.95954 1.00924 1.21487 0.91212 0.96546 0.99947 0.88195 1.19703 0.95336 0.98056 0.93938 1.20994 0.96829 0.98665 0.97142 1.21166 0.93805 0.99576 0.99079 1.21195 0.99579 0.99793 0.93699 1.21195 0.96826 0.97977 0.97560 1.21089 0.93665 0.99910 0.98790 1.23050 0.94815 0.98437 0.99743 1.21104 0.91008 1.00881 0.91041 1.21402 1.00410 0.94164 0.99264 1.21458 0.94273 0.94960 0.96904 1.21160 1.01353 0.99737 0.94125 0.77018 0.90877 1.17050 1.17477 0.74520 0.91723 0.89835 0.90714 0.89461 0.86232 0.86160 0.86115 0.86020 0.86082 0.89465 0.90550 0.83436 0.84396 0.84657 0.85276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.51 -0.73 10.64 -57.62 -0.61 -1.34 16 2 C -0.11 -0.01 1.87 36.01 0.07 0.06 16 3 Si 0.69 -1.14 30.16 -169.99 -5.13 -6.27 16 4 C 0.03 0.06 5.28 -104.62 -0.55 -0.49 16 5 C -0.66 -1.58 5.85 -39.58 -0.23 -1.81 16 6 S 2.69 6.69 4.98 -107.50 -0.54 6.15 16 7 O -0.96 -4.92 16.50 -57.17 -0.94 -5.86 16 8 O -0.92 -4.57 15.04 -66.37 -1.00 -5.57 16 9 N -1.12 1.46 4.70 -10.62 -0.05 1.41 16 10 C 0.12 -0.25 6.04 -4.05 -0.02 -0.27 16 11 C -0.12 0.35 3.78 -89.81 -0.34 0.01 16 12 H 0.10 -0.34 8.14 -51.93 -0.42 -0.77 16 13 C -0.13 0.38 7.01 -25.91 -0.18 0.20 16 14 C -0.07 0.14 3.98 -90.96 -0.36 -0.22 16 15 H 0.10 -0.24 8.09 -51.93 -0.42 -0.66 16 16 C -0.07 0.01 5.29 -104.63 -0.55 -0.54 16 17 C -0.12 0.01 8.63 -39.58 -0.34 -0.33 16 18 C -0.12 -0.03 10.05 -39.58 -0.40 -0.43 16 19 C -0.12 -0.05 10.05 -39.58 -0.40 -0.44 16 20 C -0.12 -0.04 10.05 -39.58 -0.40 -0.44 16 21 C -0.12 -0.02 9.71 -39.58 -0.38 -0.40 16 22 C -0.12 0.28 7.11 -25.91 -0.18 0.10 16 23 C -0.02 -0.03 9.55 -39.58 -0.38 -0.41 16 24 C -0.13 -0.04 10.05 -39.58 -0.40 -0.44 16 25 C -0.06 -0.02 10.05 -39.58 -0.40 -0.42 16 26 C -0.15 -0.24 8.66 -39.58 -0.34 -0.58 16 27 H 0.38 -1.32 8.62 45.56 0.39 -0.93 16 28 H 0.07 -0.16 5.80 -51.93 -0.30 -0.46 16 29 H -0.25 -0.25 6.72 56.52 0.38 0.13 16 30 H -0.25 -0.06 7.11 56.52 0.40 0.35 16 31 H 0.42 -1.44 8.37 -34.47 -0.29 -1.72 16 32 H 0.06 -0.18 7.84 -51.93 -0.41 -0.59 16 33 H 0.08 -0.12 7.79 -51.93 -0.40 -0.52 16 34 H 0.07 -0.25 8.14 -51.93 -0.42 -0.68 16 35 H 0.09 -0.24 6.06 -51.93 -0.31 -0.55 16 36 H 0.12 -0.17 6.65 -52.48 -0.35 -0.52 16 37 H 0.12 -0.14 8.06 -52.49 -0.42 -0.57 16 38 H 0.12 -0.14 8.06 -52.49 -0.42 -0.56 16 39 H 0.12 -0.15 8.06 -52.49 -0.42 -0.57 16 40 H 0.12 -0.16 8.05 -52.49 -0.42 -0.58 16 41 H 0.09 -0.18 7.69 -51.93 -0.40 -0.58 16 42 H 0.08 -0.18 8.14 -51.93 -0.42 -0.60 16 43 H 0.15 0.08 7.34 -52.49 -0.39 -0.30 16 44 H 0.14 -0.30 8.06 -52.49 -0.42 -0.73 16 45 H 0.14 -0.29 8.06 -52.48 -0.42 -0.72 16 46 H 0.13 0.10 4.91 -52.49 -0.26 -0.16 16 LS Contribution 380.73 15.07 5.74 5.74 Total: 0.00 -10.41 380.73 -14.48 -24.90 By element: Atomic # 1 Polarization: -6.13 SS G_CDS: -6.16 Total: -12.29 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: -5.80 Total: -6.87 kcal Atomic # 7 Polarization: 1.46 SS G_CDS: -0.05 Total: 1.41 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: -2.55 Total: -12.77 kcal Atomic # 14 Polarization: -1.14 SS G_CDS: -5.13 Total: -6.27 kcal Atomic # 16 Polarization: 6.69 SS G_CDS: -0.54 Total: 6.15 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -10.41 -14.48 -24.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_40_12130088_2726874.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.810 kcal (2) G-P(sol) polarization free energy of solvation -10.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds